Result of FASTA (ccds) for pF1KB7204
FASTA searches a protein or DNA sequence data bank 36.3.4 Apr, 2011
Please cite:
W.R. Pearson & D.J. Lipman PNAS (1988) 85:2444-2448

Query: pF1KB7204, 189 aa
  1>>>pF1KB7204 189 - 189 aa - 189 aa
Library: human.CCDS.faa
  18511270 residues in 32554 sequences

Statistics:  Expectation_n fit: rho(ln(x))= 5.3202+/-0.000908; mu= 12.4376+/- 0.054
 mean_var=58.5301+/-11.811, 0's: 0 Z-trim(104.5): 18  B-trim: 4 in 1/49
 Lambda= 0.167643
 statistics sampled from 7895 (7912) to 7895 sequences
Algorithm: FASTA (3.7 Nov 2010) [optimized]
Parameters: BL50 matrix (15:-5), open/ext: -10/-2
 ktup: 2, E-join: 1 (0.623), E-opt: 0.2 (0.243), width:  16
 Scan time:  1.940

The best scores are:                                      opt bits E(32554)
CCDS34996.1 IFNA16 gene_id:3449|Hs108|chr9         ( 189) 1242 308.6 1.4e-84
CCDS6498.1 IFNA4 gene_id:3441|Hs108|chr9           ( 189) 1106 275.7 1.1e-74
CCDS6500.1 IFNA17 gene_id:3451|Hs108|chr9          ( 189) 1082 269.9 6.4e-73
CCDS6499.1 IFNA10 gene_id:3446|Hs108|chr9          ( 189) 1081 269.7 7.6e-73
CCDS34995.1 IFNA7 gene_id:3444|Hs108|chr9          ( 189) 1061 264.9 2.2e-71
CCDS6497.1 IFNA21 gene_id:3452|Hs108|chr9          ( 189) 1053 262.9 8.3e-71
CCDS6501.1 IFNA14 gene_id:3448|Hs108|chr9          ( 189) 1040 259.8 7.3e-70
CCDS6502.1 IFNA5 gene_id:3442|Hs108|chr9           ( 189) 1039 259.5 8.7e-70
CCDS6506.1 IFNA2 gene_id:3440|Hs108|chr9           ( 188)  991 247.9 2.7e-66
CCDS6504.1 IFNA6 gene_id:3443|Hs108|chr9           ( 189)  975 244.1   4e-65
CCDS6507.1 IFNA8 gene_id:3445|Hs108|chr9           ( 189)  973 243.6 5.5e-65
CCDS6505.2 IFNA13 gene_id:3447|Hs108|chr9          ( 190)  944 236.6 7.2e-63
CCDS6508.1 IFNA1 gene_id:3439|Hs108|chr9           ( 189)  939 235.3 1.7e-62
CCDS6496.1 IFNW1 gene_id:3467|Hs108|chr9           ( 195)  681 173.0   1e-43
CCDS6495.1 IFNB1 gene_id:3456|Hs108|chr9           ( 187)  347 92.2 2.1e-19
CCDS34997.1 IFNE gene_id:338376|Hs108|chr9         ( 208)  340 90.5 7.4e-19


>>CCDS34996.1 IFNA16 gene_id:3449|Hs108|chr9              (189 aa)
 initn: 1242 init1: 1242 opt: 1242  Z-score: 1631.7  bits: 308.6 E(32554): 1.4e-84
Smith-Waterman score: 1242; 100.0% identity (100.0% similar) in 189 aa overlap (1-189:1-189)

               10        20        30        40        50        60
pF1KB7 MALSFSLLMAVLVLSYKSICSLGCDLPQTHSLGNRRALILLAQMGRISHFSCLKDRYDFG
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS34 MALSFSLLMAVLVLSYKSICSLGCDLPQTHSLGNRRALILLAQMGRISHFSCLKDRYDFG
               10        20        30        40        50        60

               70        80        90       100       110       120
pF1KB7 FPQEVFDGNQFQKAQAISAFHEMIQQTFNLFSTKDSSAAWDETLLDKFYIELFQQLNDLE
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS34 FPQEVFDGNQFQKAQAISAFHEMIQQTFNLFSTKDSSAAWDETLLDKFYIELFQQLNDLE
               70        80        90       100       110       120

              130       140       150       160       170       180
pF1KB7 ACVTQEVGVEEIALMNEDSILAVRKYFQRITLYLMGKKYSPCAWEVVRAEIMRSFSFSTN
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS34 ACVTQEVGVEEIALMNEDSILAVRKYFQRITLYLMGKKYSPCAWEVVRAEIMRSFSFSTN
              130       140       150       160       170       180

                
pF1KB7 LQKGLRRKD
       :::::::::
CCDS34 LQKGLRRKD
                

>>CCDS6498.1 IFNA4 gene_id:3441|Hs108|chr9                (189 aa)
 initn: 1106 init1: 1106 opt: 1106  Z-score: 1454.0  bits: 275.7 E(32554): 1.1e-74
Smith-Waterman score: 1106; 88.9% identity (95.2% similar) in 189 aa overlap (1-189:1-189)

               10        20        30        40        50        60
pF1KB7 MALSFSLLMAVLVLSYKSICSLGCDLPQTHSLGNRRALILLAQMGRISHFSCLKDRYDFG
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::.:::
CCDS64 MALSFSLLMAVLVLSYKSICSLGCDLPQTHSLGNRRALILLAQMGRISHFSCLKDRHDFG
               10        20        30        40        50        60

               70        80        90       100       110       120
pF1KB7 FPQEVFDGNQFQKAQAISAFHEMIQQTFNLFSTKDSSAAWDETLLDKFYIELFQQLNDLE
       ::.: :::.:::::::::..:::::::::::::.::::::...::.::  ::.:::::::
CCDS64 FPEEEFDGHQFQKAQAISVLHEMIQQTFNLFSTEDSSAAWEQSLLEKFSTELYQQLNDLE
               70        80        90       100       110       120

              130       140       150       160       170       180
pF1KB7 ACVTQEVGVEEIALMNEDSILAVRKYFQRITLYLMGKKYSPCAWEVVRAEIMRSFSFSTN
       ::: :::::::  :::::::::::::::::::::  ::::::::::::::::::.:::::
CCDS64 ACVIQEVGVEETPLMNEDSILAVRKYFQRITLYLTEKKYSPCAWEVVRAEIMRSLSFSTN
              130       140       150       160       170       180

                
pF1KB7 LQKGLRRKD
       ::: :::::
CCDS64 LQKRLRRKD
                

>>CCDS6500.1 IFNA17 gene_id:3451|Hs108|chr9               (189 aa)
 initn: 1082 init1: 1082 opt: 1082  Z-score: 1422.6  bits: 269.9 E(32554): 6.4e-73
Smith-Waterman score: 1082; 87.3% identity (94.7% similar) in 189 aa overlap (1-189:1-189)

               10        20        30        40        50        60
pF1KB7 MALSFSLLMAVLVLSYKSICSLGCDLPQTHSLGNRRALILLAQMGRISHFSCLKDRYDFG
       :::::::::::::::::::::::::::::::::::::::::::::::: :::::::.:::
CCDS65 MALSFSLLMAVLVLSYKSICSLGCDLPQTHSLGNRRALILLAQMGRISPFSCLKDRHDFG
               10        20        30        40        50        60

               70        80        90       100       110       120
pF1KB7 FPQEVFDGNQFQKAQAISAFHEMIQQTFNLFSTKDSSAAWDETLLDKFYIELFQQLNDLE
       .::: ::::::::.::::..:::::::::::::.::::::...::.::  ::.::::.::
CCDS65 LPQEEFDGNQFQKTQAISVLHEMIQQTFNLFSTEDSSAAWEQSLLEKFSTELYQQLNNLE
               70        80        90       100       110       120

              130       140       150       160       170       180
pF1KB7 ACVTQEVGVEEIALMNEDSILAVRKYFQRITLYLMGKKYSPCAWEVVRAEIMRSFSFSTN
       ::: ::::.::  :::::::::::::::::::::  ::::::::::::::::::.:::::
CCDS65 ACVIQEVGMEETPLMNEDSILAVRKYFQRITLYLTEKKYSPCAWEVVRAEIMRSLSFSTN
              130       140       150       160       170       180

                
pF1KB7 LQKGLRRKD
       ::: :::::
CCDS65 LQKILRRKD
                

>>CCDS6499.1 IFNA10 gene_id:3446|Hs108|chr9               (189 aa)
 initn: 1081 init1: 1081 opt: 1081  Z-score: 1421.3  bits: 269.7 E(32554): 7.6e-73
Smith-Waterman score: 1081; 87.3% identity (94.7% similar) in 189 aa overlap (1-189:1-189)

               10        20        30        40        50        60
pF1KB7 MALSFSLLMAVLVLSYKSICSLGCDLPQTHSLGNRRALILLAQMGRISHFSCLKDRYDFG
       :::::::::::::::::::::::::::::::::::::::::.:::::: :::::::.:: 
CCDS64 MALSFSLLMAVLVLSYKSICSLGCDLPQTHSLGNRRALILLGQMGRISPFSCLKDRHDFR
               10        20        30        40        50        60

               70        80        90       100       110       120
pF1KB7 FPQEVFDGNQFQKAQAISAFHEMIQQTFNLFSTKDSSAAWDETLLDKFYIELFQQLNDLE
       .::: :::::::::::::..:::::::::::::.::::::...::.::  ::.:::::::
CCDS64 IPQEEFDGNQFQKAQAISVLHEMIQQTFNLFSTEDSSAAWEQSLLEKFSTELYQQLNDLE
               70        80        90       100       110       120

              130       140       150       160       170       180
pF1KB7 ACVTQEVGVEEIALMNEDSILAVRKYFQRITLYLMGKKYSPCAWEVVRAEIMRSFSFSTN
       ::: :::::::  :::::::::::::::::::::. .:::::::::::::::::.:::::
CCDS64 ACVIQEVGVEETPLMNEDSILAVRKYFQRITLYLIERKYSPCAWEVVRAEIMRSLSFSTN
              130       140       150       160       170       180

                
pF1KB7 LQKGLRRKD
       ::: :::::
CCDS64 LQKRLRRKD
                

>>CCDS34995.1 IFNA7 gene_id:3444|Hs108|chr9               (189 aa)
 initn: 1061 init1: 1061 opt: 1061  Z-score: 1395.2  bits: 264.9 E(32554): 2.2e-71
Smith-Waterman score: 1061; 85.7% identity (93.7% similar) in 189 aa overlap (1-189:1-189)

               10        20        30        40        50        60
pF1KB7 MALSFSLLMAVLVLSYKSICSLGCDLPQTHSLGNRRALILLAQMGRISHFSCLKDRYDFG
       :: ::::::.:::::::::::::::::::::: ::::::::::::::: :::::::..: 
CCDS34 MARSFSLLMVVLVLSYKSICSLGCDLPQTHSLRNRRALILLAQMGRISPFSCLKDRHEFR
               10        20        30        40        50        60

               70        80        90       100       110       120
pF1KB7 FPQEVFDGNQFQKAQAISAFHEMIQQTFNLFSTKDSSAAWDETLLDKFYIELFQQLNDLE
       ::.: :::.::::.::::..:::::::::::::.::::::...::.::  ::.:::::::
CCDS34 FPEEEFDGHQFQKTQAISVLHEMIQQTFNLFSTEDSSAAWEQSLLEKFSTELYQQLNDLE
               70        80        90       100       110       120

              130       140       150       160       170       180
pF1KB7 ACVTQEVGVEEIALMNEDSILAVRKYFQRITLYLMGKKYSPCAWEVVRAEIMRSFSFSTN
       ::: :::::::  ::::: :::::::::::::::: ::::::::::::::::::::::::
CCDS34 ACVIQEVGVEETPLMNEDFILAVRKYFQRITLYLMEKKYSPCAWEVVRAEIMRSFSFSTN
              130       140       150       160       170       180

                
pF1KB7 LQKGLRRKD
       :.:::::::
CCDS34 LKKGLRRKD
                

>>CCDS6497.1 IFNA21 gene_id:3452|Hs108|chr9               (189 aa)
 initn: 1074 init1: 1053 opt: 1053  Z-score: 1384.7  bits: 262.9 E(32554): 8.3e-71
Smith-Waterman score: 1053; 85.7% identity (92.6% similar) in 189 aa overlap (1-189:1-189)

               10        20        30        40        50        60
pF1KB7 MALSFSLLMAVLVLSYKSICSLGCDLPQTHSLGNRRALILLAQMGRISHFSCLKDRYDFG
       :::::::::::::::::::::::::::::::::::::::::::::::: :::::::.:::
CCDS64 MALSFSLLMAVLVLSYKSICSLGCDLPQTHSLGNRRALILLAQMGRISPFSCLKDRHDFG
               10        20        30        40        50        60

               70        80        90       100       110       120
pF1KB7 FPQEVFDGNQFQKAQAISAFHEMIQQTFNLFSTKDSSAAWDETLLDKFYIELFQQLNDLE
       :::: :::::::::::::..::::::::::::::::::.:...::.::  :: :::::::
CCDS64 FPQEEFDGNQFQKAQAISVLHEMIQQTFNLFSTKDSSATWEQSLLEKFSTELNQQLNDLE
               70        80        90       100       110       120

              130       140       150       160       170       180
pF1KB7 ACVTQEVGVEEIALMNEDSILAVRKYFQRITLYLMGKKYSPCAWEVVRAEIMRSFSFSTN
       ::: :::::::  ::: ::::::.::::::::::  ::::::::::::::::::::.:  
CCDS64 ACVIQEVGVEETPLMNVDSILAVKKYFQRITLYLTEKKYSPCAWEVVRAEIMRSFSLSKI
              130       140       150       160       170       180

                
pF1KB7 LQKGLRRKD
       .:. ::::.
CCDS64 FQERLRRKE
                

>>CCDS6501.1 IFNA14 gene_id:3448|Hs108|chr9               (189 aa)
 initn: 1040 init1: 1040 opt: 1040  Z-score: 1367.7  bits: 259.8 E(32554): 7.3e-70
Smith-Waterman score: 1040; 83.6% identity (93.1% similar) in 189 aa overlap (1-189:1-189)

               10        20        30        40        50        60
pF1KB7 MALSFSLLMAVLVLSYKSICSLGCDLPQTHSLGNRRALILLAQMGRISHFSCLKDRYDFG
       ::: :.:.::..::: :: :::::.: :::::.:::.:.:.::: ::: :::::::.:: 
CCDS65 MALPFALMMALVVLSCKSSCSLGCNLSQTHSLNNRRTLMLMAQMRRISPFSCLKDRHDFE
               10        20        30        40        50        60

               70        80        90       100       110       120
pF1KB7 FPQEVFDGNQFQKAQAISAFHEMIQQTFNLFSTKDSSAAWDETLLDKFYIELFQQLNDLE
       :::: :::::::::::::..:::.::::::::::.::::::::::.:::::::::.::::
CCDS65 FPQEEFDGNQFQKAQAISVLHEMMQQTFNLFSTKNSSAAWDETLLEKFYIELFQQMNDLE
               70        80        90       100       110       120

              130       140       150       160       170       180
pF1KB7 ACVTQEVGVEEIALMNEDSILAVRKYFQRITLYLMGKKYSPCAWEVVRAEIMRSFSFSTN
       ::: :::::::  ::::::::::.::::::::::: ::::::::::::::::::.:::::
CCDS65 ACVIQEVGVEETPLMNEDSILAVKKYFQRITLYLMEKKYSPCAWEVVRAEIMRSLSFSTN
              130       140       150       160       170       180

                
pF1KB7 LQKGLRRKD
       ::: :::::
CCDS65 LQKRLRRKD
                

>>CCDS6502.1 IFNA5 gene_id:3442|Hs108|chr9                (189 aa)
 initn: 1039 init1: 1039 opt: 1039  Z-score: 1366.4  bits: 259.5 E(32554): 8.7e-70
Smith-Waterman score: 1039; 82.5% identity (93.1% similar) in 189 aa overlap (1-189:1-189)

               10        20        30        40        50        60
pF1KB7 MALSFSLLMAVLVLSYKSICSLGCDLPQTHSLGNRRALILLAQMGRISHFSCLKDRYDFG
       ::: : ::::..::. ::::::::::::::::.:::.:...::::::: :::::::.:::
CCDS65 MALPFVLLMALVVLNCKSICSLGCDLPQTHSLSNRRTLMIMAQMGRISPFSCLKDRHDFG
               10        20        30        40        50        60

               70        80        90       100       110       120
pF1KB7 FPQEVFDGNQFQKAQAISAFHEMIQQTFNLFSTKDSSAAWDETLLDKFYIELFQQLNDLE
       :::: :::::::::::::..::::::::::::::::::.:::::::::: ::.:::::::
CCDS65 FPQEEFDGNQFQKAQAISVLHEMIQQTFNLFSTKDSSATWDETLLDKFYTELYQQLNDLE
               70        80        90       100       110       120

              130       140       150       160       170       180
pF1KB7 ACVTQEVGVEEIALMNEDSILAVRKYFQRITLYLMGKKYSPCAWEVVRAEIMRSFSFSTN
       ::. ::::::.  ::: ::::.::::::::::::  ::::::::::::::::::::.:.:
CCDS65 ACMMQEVGVEDTPLMNVDSILTVRKYFQRITLYLTEKKYSPCAWEVVRAEIMRSFSLSAN
              130       140       150       160       170       180

                
pF1KB7 LQKGLRRKD
       ::. ::::.
CCDS65 LQERLRRKE
                

>>CCDS6506.1 IFNA2 gene_id:3440|Hs108|chr9                (188 aa)
 initn: 989 init1: 654 opt: 991  Z-score: 1303.7  bits: 247.9 E(32554): 2.7e-66
Smith-Waterman score: 991; 81.0% identity (91.0% similar) in 189 aa overlap (1-189:1-188)

               10        20        30        40        50        60
pF1KB7 MALSFSLLMAVLVLSYKSICSLGCDLPQTHSLGNRRALILLAQMGRISHFSCLKDRYDFG
       :::.:.::.:.:::: :: ::.:::::::::::.::.:.::::: ::: :::::::.:::
CCDS65 MALTFALLVALLVLSCKSSCSVGCDLPQTHSLGSRRTLMLLAQMRRISLFSCLKDRHDFG
               10        20        30        40        50        60

               70        80        90       100       110       120
pF1KB7 FPQEVFDGNQFQKAQAISAFHEMIQQTFNLFSTKDSSAAWDETLLDKFYIELFQQLNDLE
       :::: : :::::::..: ..:::::: :::::::::::::::::::::: ::.:::::::
CCDS65 FPQEEF-GNQFQKAETIPVLHEMIQQIFNLFSTKDSSAAWDETLLDKFYTELYQQLNDLE
                70        80        90       100       110         

              130       140       150       160       170       180
pF1KB7 ACVTQEVGVEEIALMNEDSILAVRKYFQRITLYLMGKKYSPCAWEVVRAEIMRSFSFSTN
       ::: : ::: :  ::.::::::::::::::::::  ::::::::::::::::::::.:::
CCDS65 ACVIQGVGVTETPLMKEDSILAVRKYFQRITLYLKEKKYSPCAWEVVRAEIMRSFSLSTN
     120       130       140       150       160       170         

                
pF1KB7 LQKGLRRKD
       ::..:: :.
CCDS65 LQESLRSKE
     180        

>>CCDS6504.1 IFNA6 gene_id:3443|Hs108|chr9                (189 aa)
 initn: 975 init1: 975 opt: 975  Z-score: 1282.7  bits: 244.1 E(32554): 4e-65
Smith-Waterman score: 975; 79.9% identity (88.9% similar) in 189 aa overlap (1-189:1-189)

               10        20        30        40        50        60
pF1KB7 MALSFSLLMAVLVLSYKSICSLGCDLPQTHSLGNRRALILLAQMGRISHFSCLKDRYDFG
       ::: :.::::..::: :: ::: ::::::::::.::...::::: ::: :::::::.:: 
CCDS65 MALPFALLMALVVLSCKSSCSLDCDLPQTHSLGHRRTMMLLAQMRRISLFSCLKDRHDFR
               10        20        30        40        50        60

               70        80        90       100       110       120
pF1KB7 FPQEVFDGNQFQKAQAISAFHEMIQQTFNLFSTKDSSAAWDETLLDKFYIELFQQLNDLE
       :::: :::::::::.:::..::.::::::::::::::.:::: ::::.: ::.:::::::
CCDS65 FPQEEFDGNQFQKAEAISVLHEVIQQTFNLFSTKDSSVAWDERLLDKLYTELYQQLNDLE
               70        80        90       100       110       120

              130       140       150       160       170       180
pF1KB7 ACVTQEVGVEEIALMNEDSILAVRKYFQRITLYLMGKKYSPCAWEVVRAEIMRSFSFSTN
       ::: ::: :    :::::::::::::::::::::  :::::::::::::::::::: : :
CCDS65 ACVMQEVWVGGTPLMNEDSILAVRKYFQRITLYLTEKKYSPCAWEVVRAEIMRSFSSSRN
              130       140       150       160       170       180

                
pF1KB7 LQKGLRRKD
       ::. ::::.
CCDS65 LQERLRRKE
                




189 residues in 1 query   sequences
18511270 residues in 32554 library sequences
 Tcomplib [36.3.4 Apr, 2011] (8 proc)
 start: Fri Nov  4 05:56:36 2016 done: Fri Nov  4 05:56:36 2016
 Total Scan time:  1.940 Total Display time: -0.010

Function used was FASTA [36.3.4 Apr, 2011]
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