Result of FASTA (ccds) for
pF1KB7195
FASTA searches a protein or DNA sequence data bank 36.3.4 Apr, 2011
Please cite:
W.R. Pearson & D.J. Lipman PNAS (1988) 85:2444-2448
Query: pF1KB7195, 129 aa
1>>>pF1KB7195 129 - 129 aa - 129 aa
Library: human.CCDS.faa
18511270 residues in 32554 sequences
Statistics: Expectation_n fit: rho(ln(x))= 4.8431+/-0.000684; mu= 13.6553+/- 0.041
mean_var=71.2620+/-14.018, 0's: 0 Z-trim(110.8): 17 B-trim: 48 in 1/50
Lambda= 0.151931
statistics sampled from 11865 (11881) to 11865 sequences
Algorithm: FASTA (3.7 Nov 2010) [optimized]
Parameters: BL50 matrix (15:-5), open/ext: -10/-2
ktup: 2, E-join: 1 (0.744), E-opt: 0.2 (0.365), width: 16
Scan time: 1.580
The best scores are: opt bits E(32554)
CCDS7868.1 FSHB gene_id:2488|Hs108|chr11 ( 129) 954 217.3 2.1e-57
CCDS880.1 TSHB gene_id:7252|Hs108|chr1 ( 138) 378 91.0 2.3e-19
CCDS12748.1 LHB gene_id:3972|Hs108|chr19 ( 141) 310 76.1 7.1e-15
CCDS12751.2 CGB1 gene_id:114335|Hs108|chr19 ( 155) 294 72.7 8.7e-14
CCDS12750.2 CGB2 gene_id:114336|Hs108|chr19 ( 163) 294 72.7 9e-14
CCDS12753.1 CGB8 gene_id:94115|Hs108|chr19 ( 165) 294 72.7 9.1e-14
CCDS12752.1 CGB5 gene_id:93659|Hs108|chr19 ( 165) 294 72.7 9.1e-14
CCDS12749.1 CGB3 gene_id:1082|Hs108|chr19 ( 165) 294 72.7 9.1e-14
CCDS33071.1 CGB7 gene_id:94027|Hs108|chr19 ( 165) 294 72.7 9.1e-14
>>CCDS7868.1 FSHB gene_id:2488|Hs108|chr11 (129 aa)
initn: 954 init1: 954 opt: 954 Z-score: 1143.9 bits: 217.3 E(32554): 2.1e-57
Smith-Waterman score: 954; 100.0% identity (100.0% similar) in 129 aa overlap (1-129:1-129)
10 20 30 40 50 60
pF1KB7 MKTLQFFFLFCCWKAICCNSCELTNITIAIEKEECRFCISINTTWCAGYCYTRDLVYKDP
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS78 MKTLQFFFLFCCWKAICCNSCELTNITIAIEKEECRFCISINTTWCAGYCYTRDLVYKDP
10 20 30 40 50 60
70 80 90 100 110 120
pF1KB7 ARPKIQKTCTFKELVYETVRVPGCAHHADSLYTYPVATQCHCGKCDSDSTDCTVRGLGPS
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS78 ARPKIQKTCTFKELVYETVRVPGCAHHADSLYTYPVATQCHCGKCDSDSTDCTVRGLGPS
70 80 90 100 110 120
pF1KB7 YCSFGEMKE
:::::::::
CCDS78 YCSFGEMKE
>>CCDS880.1 TSHB gene_id:7252|Hs108|chr1 (138 aa)
initn: 402 init1: 224 opt: 378 Z-score: 461.2 bits: 91.0 E(32554): 2.3e-19
Smith-Waterman score: 378; 40.2% identity (72.1% similar) in 122 aa overlap (4-123:7-126)
10 20 30 40 50
pF1KB7 MKTLQFFFLFCCWKAICCNSCELTNITIAIEKEECRFCISINTTWCAGYCYTRDLVY
....: . : .:. . : :. :. ::..:: .:..:::: :::::.:::.
CCDS88 MTALFLMSMLFGLTCGQAM--SFCIPTEYTMHIERRECAYCLTINTTICAGYCMTRDING
10 20 30 40 50
60 70 80 90 100 110
pF1KB7 KD--PARPKIQKTCTFKELVYETVRVPGCAHHADSLYTYPVATQCHCGKCDSDSTDCTVR
: : : .::.....:.::..::: :. ..:::: .:.::::..: .:: .
CCDS88 KLFLPKYALSQDVCTYRDFIYRTVEIPGCPLHVAPYFSYPVALSCKCGKCNTDYSDCIHE
60 70 80 90 100 110
120
pF1KB7 GLGPSYCSFGEMKE
.. .::.
CCDS88 AIKTNYCTKPQKSYLVGFSV
120 130
>>CCDS12748.1 LHB gene_id:3972|Hs108|chr19 (141 aa)
initn: 299 init1: 299 opt: 310 Z-score: 380.5 bits: 76.1 E(32554): 7.1e-15
Smith-Waterman score: 310; 37.4% identity (63.6% similar) in 107 aa overlap (21-127:29-135)
10 20 30 40 50
pF1KB7 MKTLQFFFLFCCWKAICCNSCELTNITIAIEKEECRFCISINTTWCAGYCYT
:. : .:.::: : ::..::: ::::: :
CCDS12 MEMLQGLLLLLLLSMGGAWASREPLRPWCHPINAILAVEKEGCPVCITVNTTICAGYCPT
10 20 30 40 50 60
60 70 80 90 100 110
pF1KB7 RDLVYKDPARPKIQKTCTFKELVYETVRVPGCAHHADSLYTYPVATQCHCGKCDSDSTDC
: . : : .::.... .:..:.::: . .: . ..::: .:.:: : ...::
CCDS12 MMRVLQAVLPPLPQVVCTYRDVRFESIRLPGCPRGVDPVVSFPVALSCRCGPCRRSTSDC
70 80 90 100 110 120
120
pF1KB7 TVRGLGPSYCSFGEMKE
: :. ..
CCDS12 GGPKDHPLTCDHPQLSGLLFL
130 140
>>CCDS12751.2 CGB1 gene_id:114335|Hs108|chr19 (155 aa)
initn: 274 init1: 274 opt: 294 Z-score: 361.0 bits: 72.7 E(32554): 8.7e-14
Smith-Waterman score: 294; 38.5% identity (65.4% similar) in 104 aa overlap (21-122:27-128)
10 20 30 40 50
pF1KB7 MKTLQFFFLFCCWKAICCNSCELTNITIAIEKEECRFCISINTTWCAGYCYTRD
:. : :.:.::: : ::..::: ::::: :
CCDS12 MSKRLLLLLLLSMGGTWASKEPLRPRCRPINATLAVEKEGCPVCITVNTTICAGYCPTMT
10 20 30 40 50 60
60 70 80 90 100 110
pF1KB7 LVYKD--PARPKIQKTCTFKELVYETVRVPGCAHHADSLYTYPVATQCHCGKCDSDSTDC
: . :: :.. .:..... .:..:.::: . .. . .: :: .:.:. : ..:::
CCDS12 RVLQGVLPALPQV--VCNYRDVRFESIRLPGCPRGVNPVVSYAVALSCQCALCRRSTTDC
70 80 90 100 110
120
pF1KB7 TVRGLGPSYCSFGEMKE
: :
CCDS12 GGPKDHPLTCDDPRFQDSSSSKAPPPSLPSPSRLPGP
120 130 140 150
>>CCDS12750.2 CGB2 gene_id:114336|Hs108|chr19 (163 aa)
initn: 274 init1: 274 opt: 294 Z-score: 360.7 bits: 72.7 E(32554): 9e-14
Smith-Waterman score: 294; 38.5% identity (65.4% similar) in 104 aa overlap (21-122:27-128)
10 20 30 40 50
pF1KB7 MKTLQFFFLFCCWKAICCNSCELTNITIAIEKEECRFCISINTTWCAGYCYTRD
:. : :.:.::: : ::..::: ::::: :
CCDS12 MSKGLLLLLLLSMGGTWASKEPLRPRCRPINATLAVEKEGCPVCITVNTTICAGYCPTMT
10 20 30 40 50 60
60 70 80 90 100 110
pF1KB7 LVYKD--PARPKIQKTCTFKELVYETVRVPGCAHHADSLYTYPVATQCHCGKCDSDSTDC
: . :: :.. .:..... .:..:.::: . .. . .: :: .:.:. : ..:::
CCDS12 RVLQGVLPALPQV--VCNYRDVRFESIRLPGCPRGVNPVVSYAVALSCQCALCRRSTTDC
70 80 90 100 110
120
pF1KB7 TVRGLGPSYCSFGEMKE
: :
CCDS12 GGPKDHPLTCDDPRFQASSSSKAPPPSLPSPSRLPGPSDTPILPQ
120 130 140 150 160
>>CCDS12753.1 CGB8 gene_id:94115|Hs108|chr19 (165 aa)
initn: 274 init1: 274 opt: 294 Z-score: 360.7 bits: 72.7 E(32554): 9.1e-14
Smith-Waterman score: 294; 38.5% identity (65.4% similar) in 104 aa overlap (21-122:29-130)
10 20 30 40 50
pF1KB7 MKTLQFFFLFCCWKAICCNSCELTNITIAIEKEECRFCISINTTWCAGYCYT
:. : :.:.::: : ::..::: ::::: :
CCDS12 MEMFQGLLLLLLLSMGGTWASKEPLRPRCRPINATLAVEKEGCPVCITVNTTICAGYCPT
10 20 30 40 50 60
60 70 80 90 100 110
pF1KB7 RDLVYKD--PARPKIQKTCTFKELVYETVRVPGCAHHADSLYTYPVATQCHCGKCDSDST
: . :: :.. .:..... .:..:.::: . .. . .: :: .:.:. : ..:
CCDS12 MTRVLQGVLPALPQV--VCNYRDVRFESIRLPGCPRGVNPVVSYAVALSCQCALCRRSTT
70 80 90 100 110
120
pF1KB7 DCTVRGLGPSYCSFGEMKE
:: : :
CCDS12 DCGGPKDHPLTCDDPRFQDSSSSKAPPPSLPSPSRLPGPSDTPILPQ
120 130 140 150 160
>>CCDS12752.1 CGB5 gene_id:93659|Hs108|chr19 (165 aa)
initn: 274 init1: 274 opt: 294 Z-score: 360.7 bits: 72.7 E(32554): 9.1e-14
Smith-Waterman score: 294; 38.5% identity (65.4% similar) in 104 aa overlap (21-122:29-130)
10 20 30 40 50
pF1KB7 MKTLQFFFLFCCWKAICCNSCELTNITIAIEKEECRFCISINTTWCAGYCYT
:. : :.:.::: : ::..::: ::::: :
CCDS12 MEMFQGLLLLLLLSMGGTWASKEPLRPRCRPINATLAVEKEGCPVCITVNTTICAGYCPT
10 20 30 40 50 60
60 70 80 90 100 110
pF1KB7 RDLVYKD--PARPKIQKTCTFKELVYETVRVPGCAHHADSLYTYPVATQCHCGKCDSDST
: . :: :.. .:..... .:..:.::: . .. . .: :: .:.:. : ..:
CCDS12 MTRVLQGVLPALPQV--VCNYRDVRFESIRLPGCPRGVNPVVSYAVALSCQCALCRRSTT
70 80 90 100 110
120
pF1KB7 DCTVRGLGPSYCSFGEMKE
:: : :
CCDS12 DCGGPKDHPLTCDDPRFQDSSSSKAPPPSLPSPSRLPGPSDTPILPQ
120 130 140 150 160
>>CCDS12749.1 CGB3 gene_id:1082|Hs108|chr19 (165 aa)
initn: 274 init1: 274 opt: 294 Z-score: 360.7 bits: 72.7 E(32554): 9.1e-14
Smith-Waterman score: 294; 38.5% identity (65.4% similar) in 104 aa overlap (21-122:29-130)
10 20 30 40 50
pF1KB7 MKTLQFFFLFCCWKAICCNSCELTNITIAIEKEECRFCISINTTWCAGYCYT
:. : :.:.::: : ::..::: ::::: :
CCDS12 MEMFQGLLLLLLLSMGGTWASKEPLRPRCRPINATLAVEKEGCPVCITVNTTICAGYCPT
10 20 30 40 50 60
60 70 80 90 100 110
pF1KB7 RDLVYKD--PARPKIQKTCTFKELVYETVRVPGCAHHADSLYTYPVATQCHCGKCDSDST
: . :: :.. .:..... .:..:.::: . .. . .: :: .:.:. : ..:
CCDS12 MTRVLQGVLPALPQV--VCNYRDVRFESIRLPGCPRGVNPVVSYAVALSCQCALCRRSTT
70 80 90 100 110
120
pF1KB7 DCTVRGLGPSYCSFGEMKE
:: : :
CCDS12 DCGGPKDHPLTCDDPRFQDSSSSKAPPPSLPSPSRLPGPSDTPILPQ
120 130 140 150 160
>>CCDS33071.1 CGB7 gene_id:94027|Hs108|chr19 (165 aa)
initn: 274 init1: 274 opt: 294 Z-score: 360.7 bits: 72.7 E(32554): 9.1e-14
Smith-Waterman score: 294; 38.5% identity (65.4% similar) in 104 aa overlap (21-122:29-130)
10 20 30 40 50
pF1KB7 MKTLQFFFLFCCWKAICCNSCELTNITIAIEKEECRFCISINTTWCAGYCYT
:. : :.:.::: : ::..::: ::::: :
CCDS33 MEMFQGLLLLLLLSMGGTWASREMLRPRCRPINATLAVEKEGCPVCITVNTTICAGYCPT
10 20 30 40 50 60
60 70 80 90 100 110
pF1KB7 RDLVYKD--PARPKIQKTCTFKELVYETVRVPGCAHHADSLYTYPVATQCHCGKCDSDST
: . :: :.. .:..... .:..:.::: . .. . .: :: .:.:. : ..:
CCDS33 MTRVLQGVLPALPQV--VCNYRDVRFESIRLPGCPRGVNPVVSYAVALSCQCALCRRSTT
70 80 90 100 110
120
pF1KB7 DCTVRGLGPSYCSFGEMKE
:: : :
CCDS33 DCGGPKDHPLTCDDPRFQASSSSKAPPPSLPSPSRLPGPSDTPILPQ
120 130 140 150 160
129 residues in 1 query sequences
18511270 residues in 32554 library sequences
Tcomplib [36.3.4 Apr, 2011] (8 proc)
start: Fri Nov 4 05:49:55 2016 done: Fri Nov 4 05:49:55 2016
Total Scan time: 1.580 Total Display time: -0.030
Function used was FASTA [36.3.4 Apr, 2011]