Result of FASTA (omim) for pF1KB7187
FASTA searches a protein or DNA sequence data bank 36.3.4 Apr, 2011
Please cite:
W.R. Pearson & D.J. Lipman PNAS (1988) 85:2444-2448

Query: pF1KB7187, 539 aa
  1>>>pF1KB7187 539 - 539 aa - 539 aa
Library: /omim/omim.rfq.tfa
  60827320 residues in 85289 sequences

Statistics:  Expectation_n fit: rho(ln(x))= 8.8895+/-0.00033; mu= 4.4539+/- 0.021
 mean_var=248.8759+/-50.117, 0's: 0 Z-trim(123.9): 11  B-trim: 1941 in 1/59
 Lambda= 0.081299
 statistics sampled from 44519 (44540) to 44519 sequences
Algorithm: FASTA (3.7 Nov 2010) [optimized]
Parameters: BL50 matrix (15:-5), open/ext: -10/-2
 ktup: 2, E-join: 1 (0.809), E-opt: 0.2 (0.522), width:  16
 Scan time: 12.700

The best scores are:                                      opt bits E(85289)
NP_006565 (OMIM: 606775) chondroitin sulfate prote ( 539) 3723 449.5 1.2e-125
NP_001193872 (OMIM: 606775) chondroitin sulfate pr ( 566) 3368 407.9 4.3e-113
NP_001193873 (OMIM: 606775) chondroitin sulfate pr ( 477) 3190 386.9 7.2e-107
NP_001193871 (OMIM: 606775) chondroitin sulfate pr ( 401) 2802 341.4 3.2e-93
NP_001193874 (OMIM: 606775) chondroitin sulfate pr ( 428) 2447 299.8 1.1e-80


>>NP_006565 (OMIM: 606775) chondroitin sulfate proteogly  (539 aa)
 initn: 3723 init1: 3723 opt: 3723  Z-score: 2376.7  bits: 449.5 E(85289): 1.2e-125
Smith-Waterman score: 3723; 100.0% identity (100.0% similar) in 539 aa overlap (1-539:1-539)

               10        20        30        40        50        60
pF1KB7 MGRAGGGGPGRGPPPLLLFLGAALVLASGAVPAREAGSAVEAEELVKGSPAWEPPANDTR
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_006 MGRAGGGGPGRGPPPLLLFLGAALVLASGAVPAREAGSAVEAEELVKGSPAWEPPANDTR
               10        20        30        40        50        60

               70        80        90       100       110       120
pF1KB7 EEAGPPAAGEDEASWTAPGGELAGPEEVLQESAAVTGTAWLEADSPGLGGVTAEAGSGDA
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_006 EEAGPPAAGEDEASWTAPGGELAGPEEVLQESAAVTGTAWLEADSPGLGGVTAEAGSGDA
               70        80        90       100       110       120

              130       140       150       160       170       180
pF1KB7 QALPATLQAPHEVLGQSIMPPAIPEATEASGPPSPTPGDKLSPASELPKESPLEVWLNLG
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_006 QALPATLQAPHEVLGQSIMPPAIPEATEASGPPSPTPGDKLSPASELPKESPLEVWLNLG
              130       140       150       160       170       180

              190       200       210       220       230       240
pF1KB7 GSTPDPQGPELTYPFQGTLEPQPASDIIDIDYFEGLDGEGRGADLGSFPGSPGTSENHPD
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_006 GSTPDPQGPELTYPFQGTLEPQPASDIIDIDYFEGLDGEGRGADLGSFPGSPGTSENHPD
              190       200       210       220       230       240

              250       260       270       280       290       300
pF1KB7 TEGETPSWSLLDLYDDFTPFDESDFYPTTSFYDDLDEEEEEEEDDKDAVGGGDLEDENEL
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_006 TEGETPSWSLLDLYDDFTPFDESDFYPTTSFYDDLDEEEEEEEDDKDAVGGGDLEDENEL
              250       260       270       280       290       300

              310       320       330       340       350       360
pF1KB7 LVPTGKPGLGPGTGQPTSRWHAVPPQHTLGSVPGSSIALRPRPGEPGRDLASSENGTECR
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_006 LVPTGKPGLGPGTGQPTSRWHAVPPQHTLGSVPGSSIALRPRPGEPGRDLASSENGTECR
              310       320       330       340       350       360

              370       380       390       400       410       420
pF1KB7 SGFVRHNGSCRSVCDLFPSYCHNGGQCYLVENIGAFCRCNTQDYIWHKGMRCESIITDFQ
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_006 SGFVRHNGSCRSVCDLFPSYCHNGGQCYLVENIGAFCRCNTQDYIWHKGMRCESIITDFQ
              370       380       390       400       410       420

              430       440       450       460       470       480
pF1KB7 VMCVAVGSAALVLLLLFMMTVFFAKKLYLLKTENTKLRRTNKFRTPSELHNDNFSLSTIA
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_006 VMCVAVGSAALVLLLLFMMTVFFAKKLYLLKTENTKLRRTNKFRTPSELHNDNFSLSTIA
              430       440       450       460       470       480

              490       500       510       520       530         
pF1KB7 EGSHPNDDPSAPHKIQEVLKSCLKEEESFNIQNSMSPKLEGGKGDQADLDVNCLQNNLT
       :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_006 EGSHPNDDPSAPHKIQEVLKSCLKEEESFNIQNSMSPKLEGGKGDQADLDVNCLQNNLT
              490       500       510       520       530         

>>NP_001193872 (OMIM: 606775) chondroitin sulfate proteo  (566 aa)
 initn: 3709 init1: 3365 opt: 3368  Z-score: 2151.4  bits: 407.9 E(85289): 4.3e-113
Smith-Waterman score: 3659; 95.2% identity (95.2% similar) in 566 aa overlap (1-539:1-566)

               10        20        30        40        50        60
pF1KB7 MGRAGGGGPGRGPPPLLLFLGAALVLASGAVPAREAGSAVEAEELVKGSPAWEPPANDTR
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 MGRAGGGGPGRGPPPLLLFLGAALVLASGAVPAREAGSAVEAEELVKGSPAWEPPANDTR
               10        20        30        40        50        60

               70        80        90       100       110       120
pF1KB7 EEAGPPAAGEDEASWTAPGGELAGPEEVLQESAAVTGTAWLEADSPGLGGVTAEAGSGDA
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 EEAGPPAAGEDEASWTAPGGELAGPEEVLQESAAVTGTAWLEADSPGLGGVTAEAGSGDA
               70        80        90       100       110       120

              130       140       150       160       170       180
pF1KB7 QALPATLQAPHEVLGQSIMPPAIPEATEASGPPSPTPGDKLSPASELPKESPLEVWLNLG
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 QALPATLQAPHEVLGQSIMPPAIPEATEASGPPSPTPGDKLSPASELPKESPLEVWLNLG
              130       140       150       160       170       180

              190       200       210       220       230       240
pF1KB7 GSTPDPQGPELTYPFQGTLEPQPASDIIDIDYFEGLDGEGRGADLGSFPGSPGTSENHPD
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 GSTPDPQGPELTYPFQGTLEPQPASDIIDIDYFEGLDGEGRGADLGSFPGSPGTSENHPD
              190       200       210       220       230       240

              250       260       270       280       290       300
pF1KB7 TEGETPSWSLLDLYDDFTPFDESDFYPTTSFYDDLDEEEEEEEDDKDAVGGGDLEDENEL
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 TEGETPSWSLLDLYDDFTPFDESDFYPTTSFYDDLDEEEEEEEDDKDAVGGGDLEDENEL
              250       260       270       280       290       300

              310       320       330       340       350       360
pF1KB7 LVPTGKPGLGPGTGQPTSRWHAVPPQHTLGSVPGSSIALRPRPGEPGRDLASSENGTECR
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 LVPTGKPGLGPGTGQPTSRWHAVPPQHTLGSVPGSSIALRPRPGEPGRDLASSENGTECR
              310       320       330       340       350       360

              370       380       390       400       410       420
pF1KB7 SGFVRHNGSCRSVCDLFPSYCHNGGQCYLVENIGAFCRCNTQDYIWHKGMRCESIITDFQ
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 SGFVRHNGSCRSVCDLFPSYCHNGGQCYLVENIGAFCRCNTQDYIWHKGMRCESIITDFQ
              370       380       390       400       410       420

              430       440       450       460       470       480
pF1KB7 VMCVAVGSAALVLLLLFMMTVFFAKKLYLLKTENTKLRRTNKFRTPSELHNDNFSLSTIA
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 VMCVAVGSAALVLLLLFMMTVFFAKKLYLLKTENTKLRRTNKFRTPSELHNDNFSLSTIA
              430       440       450       460       470       480

                                         490       500       510   
pF1KB7 EGSHPN---------------------------DDPSAPHKIQEVLKSCLKEEESFNIQN
       ::::::                           :::::::::::::::::::::::::::
NP_001 EGSHPNVRKLCNTPRTSSPHARALAHYDNVICQDDPSAPHKIQEVLKSCLKEEESFNIQN
              490       500       510       520       530       540

           520       530         
pF1KB7 SMSPKLEGGKGDQADLDVNCLQNNLT
       ::::::::::::::::::::::::::
NP_001 SMSPKLEGGKGDQADLDVNCLQNNLT
              550       560      

>>NP_001193873 (OMIM: 606775) chondroitin sulfate proteo  (477 aa)
 initn: 3190 init1: 3190 opt: 3190  Z-score: 2039.6  bits: 386.9 E(85289): 7.2e-107
Smith-Waterman score: 3190; 100.0% identity (100.0% similar) in 460 aa overlap (1-460:1-460)

               10        20        30        40        50        60
pF1KB7 MGRAGGGGPGRGPPPLLLFLGAALVLASGAVPAREAGSAVEAEELVKGSPAWEPPANDTR
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 MGRAGGGGPGRGPPPLLLFLGAALVLASGAVPAREAGSAVEAEELVKGSPAWEPPANDTR
               10        20        30        40        50        60

               70        80        90       100       110       120
pF1KB7 EEAGPPAAGEDEASWTAPGGELAGPEEVLQESAAVTGTAWLEADSPGLGGVTAEAGSGDA
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 EEAGPPAAGEDEASWTAPGGELAGPEEVLQESAAVTGTAWLEADSPGLGGVTAEAGSGDA
               70        80        90       100       110       120

              130       140       150       160       170       180
pF1KB7 QALPATLQAPHEVLGQSIMPPAIPEATEASGPPSPTPGDKLSPASELPKESPLEVWLNLG
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 QALPATLQAPHEVLGQSIMPPAIPEATEASGPPSPTPGDKLSPASELPKESPLEVWLNLG
              130       140       150       160       170       180

              190       200       210       220       230       240
pF1KB7 GSTPDPQGPELTYPFQGTLEPQPASDIIDIDYFEGLDGEGRGADLGSFPGSPGTSENHPD
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 GSTPDPQGPELTYPFQGTLEPQPASDIIDIDYFEGLDGEGRGADLGSFPGSPGTSENHPD
              190       200       210       220       230       240

              250       260       270       280       290       300
pF1KB7 TEGETPSWSLLDLYDDFTPFDESDFYPTTSFYDDLDEEEEEEEDDKDAVGGGDLEDENEL
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 TEGETPSWSLLDLYDDFTPFDESDFYPTTSFYDDLDEEEEEEEDDKDAVGGGDLEDENEL
              250       260       270       280       290       300

              310       320       330       340       350       360
pF1KB7 LVPTGKPGLGPGTGQPTSRWHAVPPQHTLGSVPGSSIALRPRPGEPGRDLASSENGTECR
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 LVPTGKPGLGPGTGQPTSRWHAVPPQHTLGSVPGSSIALRPRPGEPGRDLASSENGTECR
              310       320       330       340       350       360

              370       380       390       400       410       420
pF1KB7 SGFVRHNGSCRSVCDLFPSYCHNGGQCYLVENIGAFCRCNTQDYIWHKGMRCESIITDFQ
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 SGFVRHNGSCRSVCDLFPSYCHNGGQCYLVENIGAFCRCNTQDYIWHKGMRCESIITDFQ
              370       380       390       400       410       420

              430       440       450       460       470       480
pF1KB7 VMCVAVGSAALVLLLLFMMTVFFAKKLYLLKTENTKLRRTNKFRTPSELHNDNFSLSTIA
       ::::::::::::::::::::::::::::::::::::::::                    
NP_001 VMCVAVGSAALVLLLLFMMTVFFAKKLYLLKTENTKLRRTKMILVLPTKSRRFSSPA   
              430       440       450       460       470          

              490       500       510       520       530         
pF1KB7 EGSHPNDDPSAPHKIQEVLKSCLKEEESFNIQNSMSPKLEGGKGDQADLDVNCLQNNLT

>>NP_001193871 (OMIM: 606775) chondroitin sulfate proteo  (401 aa)
 initn: 2802 init1: 2802 opt: 2802  Z-score: 1794.6  bits: 341.4 E(85289): 3.2e-93
Smith-Waterman score: 2802; 100.0% identity (100.0% similar) in 401 aa overlap (139-539:1-401)

      110       120       130       140       150       160        
pF1KB7 GGVTAEAGSGDAQALPATLQAPHEVLGQSIMPPAIPEATEASGPPSPTPGDKLSPASELP
                                     ::::::::::::::::::::::::::::::
NP_001                               MPPAIPEATEASGPPSPTPGDKLSPASELP
                                             10        20        30

      170       180       190       200       210       220        
pF1KB7 KESPLEVWLNLGGSTPDPQGPELTYPFQGTLEPQPASDIIDIDYFEGLDGEGRGADLGSF
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 KESPLEVWLNLGGSTPDPQGPELTYPFQGTLEPQPASDIIDIDYFEGLDGEGRGADLGSF
               40        50        60        70        80        90

      230       240       250       260       270       280        
pF1KB7 PGSPGTSENHPDTEGETPSWSLLDLYDDFTPFDESDFYPTTSFYDDLDEEEEEEEDDKDA
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 PGSPGTSENHPDTEGETPSWSLLDLYDDFTPFDESDFYPTTSFYDDLDEEEEEEEDDKDA
              100       110       120       130       140       150

      290       300       310       320       330       340        
pF1KB7 VGGGDLEDENELLVPTGKPGLGPGTGQPTSRWHAVPPQHTLGSVPGSSIALRPRPGEPGR
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 VGGGDLEDENELLVPTGKPGLGPGTGQPTSRWHAVPPQHTLGSVPGSSIALRPRPGEPGR
              160       170       180       190       200       210

      350       360       370       380       390       400        
pF1KB7 DLASSENGTECRSGFVRHNGSCRSVCDLFPSYCHNGGQCYLVENIGAFCRCNTQDYIWHK
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 DLASSENGTECRSGFVRHNGSCRSVCDLFPSYCHNGGQCYLVENIGAFCRCNTQDYIWHK
              220       230       240       250       260       270

      410       420       430       440       450       460        
pF1KB7 GMRCESIITDFQVMCVAVGSAALVLLLLFMMTVFFAKKLYLLKTENTKLRRTNKFRTPSE
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 GMRCESIITDFQVMCVAVGSAALVLLLLFMMTVFFAKKLYLLKTENTKLRRTNKFRTPSE
              280       290       300       310       320       330

      470       480       490       500       510       520        
pF1KB7 LHNDNFSLSTIAEGSHPNDDPSAPHKIQEVLKSCLKEEESFNIQNSMSPKLEGGKGDQAD
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 LHNDNFSLSTIAEGSHPNDDPSAPHKIQEVLKSCLKEEESFNIQNSMSPKLEGGKGDQAD
              340       350       360       370       380       390

      530         
pF1KB7 LDVNCLQNNLT
       :::::::::::
NP_001 LDVNCLQNNLT
              400 

>>NP_001193874 (OMIM: 606775) chondroitin sulfate proteo  (428 aa)
 initn: 2788 init1: 2444 opt: 2447  Z-score: 1569.2  bits: 299.8 E(85289): 1.1e-80
Smith-Waterman score: 2738; 93.7% identity (93.7% similar) in 428 aa overlap (139-539:1-428)

      110       120       130       140       150       160        
pF1KB7 GGVTAEAGSGDAQALPATLQAPHEVLGQSIMPPAIPEATEASGPPSPTPGDKLSPASELP
                                     ::::::::::::::::::::::::::::::
NP_001                               MPPAIPEATEASGPPSPTPGDKLSPASELP
                                             10        20        30

      170       180       190       200       210       220        
pF1KB7 KESPLEVWLNLGGSTPDPQGPELTYPFQGTLEPQPASDIIDIDYFEGLDGEGRGADLGSF
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 KESPLEVWLNLGGSTPDPQGPELTYPFQGTLEPQPASDIIDIDYFEGLDGEGRGADLGSF
               40        50        60        70        80        90

      230       240       250       260       270       280        
pF1KB7 PGSPGTSENHPDTEGETPSWSLLDLYDDFTPFDESDFYPTTSFYDDLDEEEEEEEDDKDA
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 PGSPGTSENHPDTEGETPSWSLLDLYDDFTPFDESDFYPTTSFYDDLDEEEEEEEDDKDA
              100       110       120       130       140       150

      290       300       310       320       330       340        
pF1KB7 VGGGDLEDENELLVPTGKPGLGPGTGQPTSRWHAVPPQHTLGSVPGSSIALRPRPGEPGR
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 VGGGDLEDENELLVPTGKPGLGPGTGQPTSRWHAVPPQHTLGSVPGSSIALRPRPGEPGR
              160       170       180       190       200       210

      350       360       370       380       390       400        
pF1KB7 DLASSENGTECRSGFVRHNGSCRSVCDLFPSYCHNGGQCYLVENIGAFCRCNTQDYIWHK
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 DLASSENGTECRSGFVRHNGSCRSVCDLFPSYCHNGGQCYLVENIGAFCRCNTQDYIWHK
              220       230       240       250       260       270

      410       420       430       440       450       460        
pF1KB7 GMRCESIITDFQVMCVAVGSAALVLLLLFMMTVFFAKKLYLLKTENTKLRRTNKFRTPSE
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 GMRCESIITDFQVMCVAVGSAALVLLLLFMMTVFFAKKLYLLKTENTKLRRTNKFRTPSE
              280       290       300       310       320       330

      470       480                                  490       500 
pF1KB7 LHNDNFSLSTIAEGSHPN---------------------------DDPSAPHKIQEVLKS
       ::::::::::::::::::                           :::::::::::::::
NP_001 LHNDNFSLSTIAEGSHPNVRKLCNTPRTSSPHARALAHYDNVICQDDPSAPHKIQEVLKS
              340       350       360       370       380       390

             510       520       530         
pF1KB7 CLKEEESFNIQNSMSPKLEGGKGDQADLDVNCLQNNLT
       ::::::::::::::::::::::::::::::::::::::
NP_001 CLKEEESFNIQNSMSPKLEGGKGDQADLDVNCLQNNLT
              400       410       420        




539 residues in 1 query   sequences
60827320 residues in 85289 library sequences
 Tcomplib [36.3.4 Apr, 2011] (8 proc)
 start: Fri Nov  4 05:43:02 2016 done: Fri Nov  4 05:43:04 2016
 Total Scan time: 12.700 Total Display time:  0.030

Function used was FASTA [36.3.4 Apr, 2011]
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