GENSCAN 1.0	Date run:  4-Nov-116	Time: 04:36:32

Sequence gi568815581r:55620669_55821070 : 200402 bp : 40.02% C+G : Isochore 1 ( 0 - 43 C+G%)

Parameter matrix: HumanIso.smat

Predicted genes/exons:

Gn.Ex Type S .Begin ...End .Len Fr Ph I/Ac Do/T CodRg P.... Tscr..
----- ---- - ------ ------ ---- -- -- ---- ---- ----- ----- ------

 1.01 Init +    101    251  151  1  1   57   63    73 0.156   1.96
 1.02 Intr +  23495  23598  104  0  2  113   53    95 0.030   7.47
 1.03 Intr +  37675  37776  102  0  0   93  106    30 0.417   4.75
 1.04 Intr +  44556  44690  135  2  0   92   72    56 0.163   4.24
 1.05 Term +  47067  47147   81  2  0   98   36    58 0.159  -1.69
 1.06 PlyA +  49270  49275    6                               1.05

 2.05 PlyA -  50803  50798    6                               1.05
 2.04 Term -  51976  51563  414  1  0   44   48   171 0.171   2.98
 2.03 Intr -  65890  65775  116  2  2   51   62    76 0.001   0.55
 2.02 Intr -  81953  81756  198  0  0   76   73   111 0.489   6.80
 2.01 Init -  87370  87199  172  1  1   53    0   187 0.127   6.05
 2.00 Prom -  96244  96205   40                              -2.15

 3.02 PlyA -  96294  96289    6                               1.05
 3.01 Sngl - 100402  99998  405  1  0   74   53   394 0.676  30.53
 3.00 Prom - 105157 105118   40                              -3.95

 4.03 PlyA - 105891 105886    6                               1.05
 4.02 Term - 108617 108493  125  0  2   74   48    89 0.241   1.07
 4.01 Init - 111577 111259  319  1  1   64   72   198 0.286  13.36
 4.00 Prom - 114608 114569   40                              -6.55

 5.00 Prom + 117145 117184   40                              -3.05
 5.01 Init + 129522 129602   81  2  0   87   67    77 0.911   6.52
 5.02 Intr + 130313 130576  264  1  0   76   69   272 0.019  20.89
 5.03 Intr + 146667 146784  118  2  1   58  113    90 0.557   7.62
 5.04 Intr + 150438 150533   96  1  0   91   73    93 0.964   7.16
 5.05 Intr + 150576 150697  122  1  2  105  -20    73 0.020  -2.51
 5.06 Intr + 153056 153227  172  1  1   17   93   224 0.018  14.39
 5.07 Term + 155882 155991  110  0  2   72   44    91 0.591   0.79
 5.08 PlyA + 156685 156690    6                               1.05

 6.00 Prom + 158442 158481   40                              -7.85
 6.01 Sngl + 169388 170269  882  1  0   42   43   331 0.963  19.77
 6.02 PlyA + 170402 170407    6                               1.05

 7.00 Prom + 171166 171205   40                              -3.65
 7.01 Init + 176765 176842   78  1  0   53   99    47 0.858   3.41
 7.02 Term + 180225 180950  726  2  0   70   43   232 0.700   9.38
 7.03 PlyA + 180974 180979    6                               1.05

 8.00 Prom + 187724 187763   40                              -1.25
 8.01 Init + 198098 198143   46  1  1   91  103    37 0.043   6.40

Suboptimal exons with probability > 0.800

Exnum Type S .Begin ...End .Len Fr Ph B/Ac Do/T CodRg P.... Tscr..
----- ---- - ------ ------ ---- -- -- ---- ---- ----- ----- ------

S.001 Term + 130313 130612  300  1  0   76   39   344 0.851  22.54


Predicted peptide sequence(s):

Predicted coding sequence(s):


>gi568815581r:55620669_55821070|GENSCAN_predicted_peptide_1|190_aa
MWIRTKLPLGTNHQQTLLSSGFSVWSLPSLGHESRNLLLRVFLLKFGQCPRCCVDEEGLS
VQVSGEREKNSWSPGKEMGERKQPQWYLDSPFPQFLSYDLKELSSLKTCTPLSANKAPKD
LIRCLVLHSLKKHLLKTEYGPATIADARSAKTETELMLSRAQNPVAPPPRDTSTIIASTM
GAPNLGLVTS

>gi568815581r:55620669_55821070|GENSCAN_predicted_CDS_1|573_bp
atgtggatcaggactaaacttccactgggaacaaatcatcagcagactttgctgtcttct
ggctttagtgtttggtctttgccatctcttggccatgaaagtaggaacctacttctaaga
gtcttcttgctgaagtttggtcagtgtcccaggtgctgtgtggatgaagagggtttatca
gtacaggtgagtggtgaacgtgaaaagaacagctggagccctggtaaggagatgggggag
aggaagcagccacagtggtacttagattctcctttccctcaatttctgtcctatgatctg
aaggaattaagttcactgaaaacttgcacacccctttcagcaaataaagccccaaaagat
ctcattaggtgtctggtacttcactctctcaagaaacacttattaaaaaccgagtatggt
ccagccacgatagcagatgccaggagtgcaaagacagagacagaattgatgctttcaaga
gcccagaatccagtggcaccgccaccacgggacacctccaccatcattgctagtacaatg
ggagccccaaaccttggtttggtcacctcctaa

>gi568815581r:55620669_55821070|GENSCAN_predicted_peptide_2|299_aa
MQSGEMFLIDESGGMKDFLEEIASDMGLEAGAEFQLVKLGLRERKFLQEEEKAKEKGKFI
PSRGFLVSLTSRINLQTVAMSVTVLKDGVPRVCSFTCSDVSRVSSSRWVPGLADFRNEAT
DLCIHFHTADKDIPETGQFTIERDLMDLQFHIAEEDSQSWQKLLQFQLWLKGAQVQLRLL
LQRVQVSSLGSFHVVFVLRVRRRQELRFGNLHLDFKGCMETPGCLGRSLLQGQSPQGESL
LGQCGRKVLGLEPTNRVPTGALPGRAMRRGPLSSRPQNGRSTNSLHCVPGKAADTQCQL

>gi568815581r:55620669_55821070|GENSCAN_predicted_CDS_2|900_bp
atgcaaagtggagaaatgtttcttatagatgagagtggaggaatgaaagacttcttggaa
gaaatagcatctgacatgggccttgaagctggggcagaatttcagttggtaaaattggga
ttaagagaaagaaaatttcttcaagaagaagaaaaggctaaagaaaaaggaaaattcatt
ccttcccgtgggttcttggtctcacttacttcaagaatcaatctgcagaccgtcgcgatg
agtgttacagttcttaaagatggtgtgcccagagtttgttccttcacatgttcagatgtg
tccagagtttcttcttcccggtgggttcctggtctcgctgacttcaggaatgaagccaca
gacctttgcatccattttcacaccgctgataaagatatacctgagactgggcagtttaca
atagaaagagatttaatggacttacagtttcacatagctgaggaggactctcaatcatgg
cagaagctgcttcagttccagctgtggctaaaaggggctcaggtacagcttaggctgttg
cttcagagggtgcaagtctctagccttggcagcttccacgtggtgtttgtcctgagggta
cgcagaagacaagaattgaggtttgggaacctccacctagatttcaaaggatgtatggaa
acacctggatgtctaggcagaagcctgctgcaggggcagagccctcagggagaatctctg
ctagggcagtgtggaaggaaagtgttggggttggagcccacaaacagagttcccactggg
gcactgcctggcagagctatgagaagagggccattgtcctccagaccccagaatggtaga
tccaccaacagcttgcactgtgtgcctggaaaagctgcagacactcaatgccagctgtga

>gi568815581r:55620669_55821070|GENSCAN_predicted_peptide_3|134_aa
MTEEPIKEILGAPKAHMAATMEKSPKSEVVITTVPLVSEIQLMAATGGTELSCYRCIIPF
AVVVFIAGIVVTAVAYSFNSHGSIISIFGLVVLSSGLFLLASSALCWKVRQRSKKAKRRE
SQTALVANQRSLFA

>gi568815581r:55620669_55821070|GENSCAN_predicted_CDS_3|405_bp
atgactgaagagcccatcaaggagatcctgggagccccaaaggctcacatggcagcgacg
atggagaagagccccaagagtgaagttgtgatcaccacagtccctctggtcagtgagatt
cagttgatggctgctacagggggtaccgagctctcctgctaccgctgcatcatccccttt
gctgtggttgtcttcatcgccggcatcgtggtcaccgcggtggcttacagcttcaattcc
catgggtctattatctccatctttggcctggttgttctgtcatctggactttttttacta
gcctccagtgccttgtgctggaaagtgagacaaaggagcaagaaagccaagagacgggag
agtcaaacagctctcgtggcaaatcagagaagcttgtttgcttga

>gi568815581r:55620669_55821070|GENSCAN_predicted_peptide_4|147_aa
MEVTQQHSSFFLDSVGWEGRCSKEMHSPCDQSTPSWQPQGSPVASTKPVKVLCPKALLVP
RYMLPVPREIHPWAFLSVFPKVGCSCVLSHKTVNRGLRLTSCQSQQVISYLSAFANIRCP
LPLTWTITEASQLVSQPAFPLPHIDFP

>gi568815581r:55620669_55821070|GENSCAN_predicted_CDS_4|444_bp
atggaggtcacacagcagcacagcagcttctttctggattccgtgggctgggaagggagg
tgctctaaggaaatgcacagtccatgtgatcagagcacaccctcttggcagcctcagggg
agcccagttgcttctacaaaacccgtgaaagttctctgtccaaaagccttgttggtcccg
cggtacatgcttcctgttcccagagagattcacccttgggctttcctatcagtcttccct
aaagttggctgctcctgtgtcctgtcacataaaactgtgaaccgaggtctccgacttacg
tcatgtcagtcacagcaggtgatttcctacctgtccgcgtttgccaatatcaggtgccca
ttgcctcttacctggacaatcacagaggcatcccaactggtgtctcaacctgctttccct
cttccccatattgactttccctag

>gi568815581r:55620669_55821070|GENSCAN_predicted_peptide_5|320_aa
MSFQSLLALTWLLHRFDVQTTYFIQSQFPANDAGAAGAAGAARSPRPQAHTKGVRGLPSR
RRSPDCGRMELAAGSFSEEQFWEACAELQQPALAGADWQLLVETSGISIYRLLDKKTGLY
EYKVFGVLEDCSPTLLADIYMDSDYRKQWDQYVKELYEQECNGETVVYWEVKYPFPMSNR
DVSFPQAAVYCREVELVSQQAQITLSLILAAAFAKDIASCMVFGELRYVYLRQRRDLDME
GRKIHVILARSTSMPQLGERSGVIRVKQYKQSLAIESDGKKGSKAWEGLLEVAFRSELTF
SAPKLDDVPMSICLMLCGAD

>gi568815581r:55620669_55821070|GENSCAN_predicted_CDS_5|963_bp
atgagtttccagagtttattggcactcacgtggctgttacatcgttttgatgttcaaacg
acctactttattcaaagtcagtttcctgccaatgacgctggggcagccggggcagccggg
gcagcccggtcaccccgcccccaggcccacactaagggtgtccgcggcctgccctccagg
cggaggagcccggactgcggaaggatggagctggccgccggaagcttctcggaggagcag
ttctgggaggcctgcgccgagctccagcagcccgctctggccggggccgactggcagctc
ctagtggagacctcgggcatcagcatctaccggctgctggacaagaagactggactttat
gagtataaagtctttggtgttctggaggactgctcaccaactctactggcagacatctat
atggactcagattacagaaaacaatgggaccagtatgttaaagaactctatgaacaagaa
tgcaacggagagactgtggtctactgggaagtgaagtacccttttcccatgtccaacaga
gacgtatcctttccacaagctgcagtctattgcagagaggtagagctggtttctcagcag
gcacagataacattgtctctgattcttgcagcagcatttgctaaagatattgcttcttgt
atggtgtttggagagctcagatatgtctaccttcggcagcggcgagacctggacatggaa
gggaggaagatccatgtgatcctggcccggagcacctccatgcctcagcttggcgagagg
tctggggtgatccgggtgaagcaatacaagcagagcctggcgatcgagagtgacggcaag
aaggggagcaaagcttgggaggggctgctggaagtggcatttcgttcagagctgactttc
agtgcacccaaactggatgacgtgccaatgtccatttgccttatgctttgtggagctgat
tag

>gi568815581r:55620669_55821070|GENSCAN_predicted_peptide_6|293_aa
MIISIDAEKALDKIQQPFMLKTLNKLGIDGMYLKIIRAICDKPTANIILNGQKLEAFPLK
TGTRQECPLSPLLFNIVLEVLARAIRQEKEIKGIQLGKAEVKLSLFANDMIVYLENPIVS
AQNLLKLISNFSKVSGYKINVQKSQAFLYTNNRQTESQIMSELPFTIASKRIKYLGIQLT
RDVKDLFKENYKPLLEEIKEDTNKWKNIPCTWVGRINIVKMAILPKVIYRFNAIPIKLPM
TFFTELEKTTLKFIWNQKRARITKSILSQKNKAGGITLPDFKLYYKATVTKTA

>gi568815581r:55620669_55821070|GENSCAN_predicted_CDS_6|882_bp
atgattatctcaatagatgcagaaaaggccttggacaaaattcagcaacccttcatgcta
aaaactctcaataaattaggtattgatggcatgtatctcaaaataataagagctatctgt
gacaaacccacagccaatatcatactgaatgggcaaaaactggaagcattccctttgaaa
actggcacaagacaggaatgccctctctcaccactcctattcaacatagtgttggaagtt
ctggccagggcaattaggcaggagaaggaaataaagggtattcaattaggaaaagcagaa
gtcaaattgtccctgtttgcaaacgacatgattgtatatctagaaaaccccattgtctca
gcccaaaatctccttaagctgataagcaacttcagcaaagtctcaggatacaaaatcaat
gtacaaaaatcacaagcattcttatacaccaacaacagacaaacagagagccaaatcatg
agtgaactcccattcacaattgcttcaaagagaataaaatacctaggaatccaacttaca
agggatgtgaaggacctcttcaaggagaactacaaaccactgctcgaggaaataaaagag
gatacaaacaaatggaagaacattccatgcacatgggtaggaagaatcaatatcgtgaaa
atggccatactgcccaaggtaatttacagattcaatgccatccccatcaagctaccaatg
actttcttcacagaattggaaaaaactactttaaagttcatatggaaccaaaaaagggcc
cgcatcaccaagtcaatcctaagccaaaagaacaaagctggaggcatcacgctacctgac
ttcaaactgtactacaaggctacagtaaccaaaacagcatga

>gi568815581r:55620669_55821070|GENSCAN_predicted_peptide_7|267_aa
MWNLEPAKDKCLVNTTGFLLVPGLILVCWSLLEIHSRPCLPGYHQWSLQNSKDYCLFLPL
EASSQRGTHQIPAGTLLYEVSVDPCWEVSPSLEAQGSGTYLMHYIMVKGSKQQEELTNLN
IYAPNTGAPRCIKQILRELQRDLDSHTMTVGDCNTPLSILDRSVWQKINNDIQDLNSALD
QVDLIDIYKTLHSKSTEYTFFSAPHHTYSKTDRIIGSKTLLSKCKRTEIITNSLSDHSAI
KLELRIKKLTQKHRTTWKLNNLLLNDF

>gi568815581r:55620669_55821070|GENSCAN_predicted_CDS_7|804_bp
atgtggaatttagaacctgccaaagataaatgtctggtaaataccacaggatttctgttg
gtaccagggttaatactggtctgctggagtttgctggagatccactccagaccctgtttg
cctgggtatcaccagtggagtctgcagaatagcaaagattactgcctgttccttcctctg
gaagcttcgtcccagaggggcacccaccagataccagctggaactctcctgtatgaagtg
tctgttgacccctgctgggaggtgtctcccagtctggaggcacagggatcagggacctac
ttgatgcattacataatggtaaaaggatcaaagcaacaagaagagctaactaacctaaat
atatatgcacccaatacaggagcacccagatgtataaagcaaattcttagagaactgcaa
agagacttagactcccacacaatgacagtgggagactgtaataccccactgtcaatatta
gacagatcagtgtggcagaaaattaataatgatatccaggacttgaactcagctctggac
caagtggacctaatagacatctacaaaactctccactccaaatcaacagaatatacattc
ttctcagcaccacatcacacttattctaaaactgaccgcataattggaagtaaaacactc
ctcagcaaatgtaaaagaacggaaatcataacaaacagtctctcagaccacagtgcaatc
aaattagaactcaggattaagaaactcactcaaaagcacagaactacatggaaactgaac
aacctgctcctgaatgacttctag

>gi568815581r:55620669_55821070|GENSCAN_predicted_peptide_8|16_aa
MKKSDRKPQTPKLEDX

>gi568815581r:55620669_55821070|GENSCAN_predicted_CDS_8|48_bp
atgaagaagagtgacaggaagccacagaccccaaaactagaagatgnn