FASTA searches a protein or DNA sequence data bank 36.3.4 Apr, 2011
Please cite:
W.R. Pearson & D.J. Lipman PNAS (1988) 85:2444-2448

Query: pF1KB3982, 119 aa
  1>>>pF1KB3982 119 - 119 aa - 119 aa
Library: /omim/omim.rfq.tfa
  60827320 residues in 85289 sequences

Statistics:  Expectation_n fit: rho(ln(x))= 4.8393+/-0.000321; mu= 12.8037+/- 0.020
 mean_var=58.6045+/-11.459, 0's: 0 Z-trim(114.5): 5  B-trim: 23 in 1/59
 Lambda= 0.167536
 statistics sampled from 24379 (24384) to 24379 sequences
Algorithm: FASTA (3.7 Nov 2010) [optimized]
Parameters: BL50 matrix (15:-5), open/ext: -10/-2
 ktup: 2, E-join: 1 (0.683), E-opt: 0.2 (0.286), width:  16
 Scan time:  4.560

The best scores are:                                      opt bits E(85289)
NP_001014 (OMIM: 603682) 40S ribosomal protein S20 ( 119)  766 192.9   1e-49
NP_001139699 (OMIM: 603682) 40S ribosomal protein  ( 142)  726 183.3 9.8e-47


>>NP_001014 (OMIM: 603682) 40S ribosomal protein S20 iso  (119 aa)
 initn: 766 init1: 766 opt: 766  Z-score: 1013.4  bits: 192.9 E(85289): 1e-49
Smith-Waterman score: 766; 100.0% identity (100.0% similar) in 119 aa overlap (1-119:1-119)

               10        20        30        40        50        60
pF1KB3 MAFKDTGKTPVEPEVAIHRIRITLTSRNVKSLEKVCADLIRGAKEKNLKVKGPVRMPTKT
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 MAFKDTGKTPVEPEVAIHRIRITLTSRNVKSLEKVCADLIRGAKEKNLKVKGPVRMPTKT
               10        20        30        40        50        60

               70        80        90       100       110         
pF1KB3 LRITTRKTPCGEGSKTWDRFQMRIHKRLIDLHSPSEIVKQITSISIEPGVEVEVTIADA
       :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 LRITTRKTPCGEGSKTWDRFQMRIHKRLIDLHSPSEIVKQITSISIEPGVEVEVTIADA
               70        80        90       100       110         

>>NP_001139699 (OMIM: 603682) 40S ribosomal protein S20   (142 aa)
 initn: 723 init1: 723 opt: 726  Z-score: 960.1  bits: 183.3 E(85289): 9.8e-47
Smith-Waterman score: 726; 95.8% identity (97.5% similar) in 119 aa overlap (1-118:1-119)

               10        20        30        40        50        60
pF1KB3 MAFKDTGKTPVEPEVAIHRIRITLTSRNVKSLEKVCADLIRGAKEKNLKVKGPVRMPTKT
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 MAFKDTGKTPVEPEVAIHRIRITLTSRNVKSLEKVCADLIRGAKEKNLKVKGPVRMPTKT
               10        20        30        40        50        60

               70        80        90       100       110          
pF1KB3 LRITTRKTPCGEGSKTWDRFQMRIHKRLIDLHSPSEIVKQITSISIEPGVE-VEVTIADA
       ::::::::::::::::::::::::::::::::::::::::::::::::::: .: : :. 
NP_001 LRITTRKTPCGEGSKTWDRFQMRIHKRLIDLHSPSEIVKQITSISIEPGVELIESTDAEP
               70        80        90       100       110       120

NP_001 MDTEGQQYTLRSVFESPGTCPF
              130       140  




119 residues in 1 query   sequences
60827320 residues in 85289 library sequences
 Tcomplib [36.3.4 Apr, 2011] (8 proc)
 start: Fri Nov  4 02:46:07 2016 done: Fri Nov  4 02:46:08 2016
 Total Scan time:  4.560 Total Display time: -0.020

Function used was FASTA [36.3.4 Apr, 2011]