Result of FASTA (omim) for pF1KB3544
FASTA searches a protein or DNA sequence data bank 36.3.4 Apr, 2011
Please cite:
W.R. Pearson & D.J. Lipman PNAS (1988) 85:2444-2448

Query: pF1KB3544, 108 aa
  1>>>pF1KB3544 108 - 108 aa - 108 aa
Library: /omim/omim.rfq.tfa
  60827320 residues in 85289 sequences

Statistics:  Expectation_n fit: rho(ln(x))= 5.2150+/-0.000275; mu= 9.7577+/- 0.017
 mean_var=57.8093+/-11.352, 0's: 0 Z-trim(119.2): 53  B-trim: 0 in 0/57
 Lambda= 0.168685
 statistics sampled from 32805 (32862) to 32805 sequences
Algorithm: FASTA (3.7 Nov 2010) [optimized]
Parameters: BL50 matrix (15:-5), open/ext: -10/-2
 ktup: 2, E-join: 1 (0.781), E-opt: 0.2 (0.385), width:  16
 Scan time:  3.920

The best scores are:                                      opt bits E(85289)
NP_463460 (OMIM: 186945) peptidyl-prolyl cis-trans ( 108)  736 186.5 7.1e-48
NP_000792 (OMIM: 186945) peptidyl-prolyl cis-trans ( 108)  736 186.5 7.1e-48
NP_004107 (OMIM: 600620) peptidyl-prolyl cis-trans ( 108)  641 163.4 6.5e-41
XP_016859083 (OMIM: 600620) PREDICTED: peptidyl-pr (  79)  447 116.1   8e-27
XP_016859085 (OMIM: 600620) PREDICTED: peptidyl-pr (  79)  447 116.1   8e-27
XP_016859084 (OMIM: 600620) PREDICTED: peptidyl-pr (  79)  447 116.1   8e-27
NP_001309893 (OMIM: 600620) peptidyl-prolyl cis-tr (  79)  447 116.1   8e-27
XP_016859082 (OMIM: 600620) PREDICTED: peptidyl-pr (  79)  447 116.1   8e-27
NP_001309892 (OMIM: 600620) peptidyl-prolyl cis-tr (  79)  447 116.1   8e-27
NP_473374 (OMIM: 600620) peptidyl-prolyl cis-trans (  80)  415 108.3 1.8e-24
XP_011531001 (OMIM: 600620) PREDICTED: peptidyl-pr ( 100)  410 107.2 5.1e-24
NP_002005 (OMIM: 600611) peptidyl-prolyl cis-trans ( 459)  338 89.9 3.6e-18
XP_011519231 (OMIM: 600611) PREDICTED: peptidyl-pr ( 414)  325 86.7   3e-17
NP_001139249 (OMIM: 602623,608516) peptidyl-prolyl ( 268)  321 85.7   4e-17
NP_001139248 (OMIM: 602623,608516) peptidyl-prolyl ( 457)  321 85.8 6.4e-17
NP_004108 (OMIM: 602623,608516) peptidyl-prolyl ci ( 457)  321 85.8 6.4e-17
NP_001139247 (OMIM: 602623,608516) peptidyl-prolyl ( 457)  321 85.8 6.4e-17
NP_476433 (OMIM: 186946) peptidyl-prolyl cis-trans ( 142)  305 81.7 3.4e-16
XP_005273905 (OMIM: 186946) PREDICTED: peptidyl-pr ( 142)  305 81.7 3.4e-16
NP_001128680 (OMIM: 186946) peptidyl-prolyl cis-tr ( 142)  305 81.7 3.4e-16
NP_004461 (OMIM: 186946) peptidyl-prolyl cis-trans ( 142)  305 81.7 3.4e-16
XP_011534867 (OMIM: 186947) PREDICTED: peptidyl-pr ( 191)  291 78.3 4.7e-15
NP_002004 (OMIM: 186947) peptidyl-prolyl cis-trans ( 224)  291 78.3 5.4e-15
NP_068758 (OMIM: 259450,607063,610968) peptidyl-pr ( 582)  260 71.0 2.3e-12
XP_011523401 (OMIM: 259450,607063,610968) PREDICTE ( 601)  260 71.0 2.4e-12
XP_016876582 (OMIM: 186947) PREDICTED: peptidyl-pr ( 196)  252 68.8 3.4e-12
NP_060416 (OMIM: 614505,614557) peptidyl-prolyl ci ( 211)  252 68.8 3.7e-12
XP_016876581 (OMIM: 186947) PREDICTED: peptidyl-pr ( 229)  252 68.9 3.9e-12
NP_001128684 (OMIM: 607062) peptidyl-prolyl cis-tr ( 221)  249 68.1 6.3e-12
XP_011513417 (OMIM: 616257) PREDICTED: peptidyl-pr ( 359)  247 67.7 1.4e-11
NP_009201 (OMIM: 616257) peptidyl-prolyl cis-trans ( 570)  247 67.8   2e-11
NP_851939 (OMIM: 607062) peptidyl-prolyl cis-trans ( 222)  237 65.2 4.8e-11
NP_001271272 (OMIM: 616257) peptidyl-prolyl cis-tr ( 338)  231 63.8 1.9e-10
NP_001271270 (OMIM: 616257) peptidyl-prolyl cis-tr ( 623)  231 63.9 3.3e-10
NP_057678 (OMIM: 610571) peptidyl-prolyl cis-trans ( 201)  225 62.3 3.3e-10
XP_011523402 (OMIM: 259450,607063,610968) PREDICTE ( 510)  223 61.9 1.1e-09
XP_016868231 (OMIM: 604839) PREDICTED: inactive pe ( 266)  217 60.4 1.6e-09
XP_006716216 (OMIM: 604839) PREDICTED: inactive pe ( 282)  217 60.4 1.7e-09
XP_016868230 (OMIM: 604839) PREDICTED: inactive pe ( 317)  217 60.4 1.9e-09
NP_001128683 (OMIM: 604839) inactive peptidyl-prol ( 322)  217 60.4 1.9e-09
NP_003593 (OMIM: 604839) inactive peptidyl-prolyl  ( 327)  217 60.4   2e-09
NP_001186715 (OMIM: 186945) peptidyl-prolyl cis-tr (  97)  196 55.1 2.3e-08
NP_001137254 (OMIM: 610571) peptidyl-prolyl cis-tr ( 146)  190 53.7 9.2e-08
NP_001295302 (OMIM: 604840) peptidyl-prolyl cis-tr ( 412)  190 53.9 2.3e-07
XP_005246695 (OMIM: 607062) PREDICTED: peptidyl-pr ( 181)  177 50.6   1e-06
XP_011526166 (OMIM: 604840) PREDICTED: peptidyl-pr ( 383)  178 50.9 1.6e-06
NP_036313 (OMIM: 604840) peptidyl-prolyl cis-trans ( 413)  178 51.0 1.7e-06
XP_011526165 (OMIM: 604840) PREDICTED: peptidyl-pr ( 413)  178 51.0 1.7e-06
NP_001268233 (OMIM: 604839) inactive peptidyl-prol ( 297)  153 44.8 8.9e-05


>>NP_463460 (OMIM: 186945) peptidyl-prolyl cis-trans iso  (108 aa)
 initn: 736 init1: 736 opt: 736  Z-score: 980.5  bits: 186.5 E(85289): 7.1e-48
Smith-Waterman score: 736; 100.0% identity (100.0% similar) in 108 aa overlap (1-108:1-108)

               10        20        30        40        50        60
pF1KB3 MGVQVETISPGDGRTFPKRGQTCVVHYTGMLEDGKKFDSSRDRNKPFKFMLGKQEVIRGW
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_463 MGVQVETISPGDGRTFPKRGQTCVVHYTGMLEDGKKFDSSRDRNKPFKFMLGKQEVIRGW
               10        20        30        40        50        60

               70        80        90       100        
pF1KB3 EEGVAQMSVGQRAKLTISPDYAYGATGHPGIIPPHATLVFDVELLKLE
       ::::::::::::::::::::::::::::::::::::::::::::::::
NP_463 EEGVAQMSVGQRAKLTISPDYAYGATGHPGIIPPHATLVFDVELLKLE
               70        80        90       100        

>>NP_000792 (OMIM: 186945) peptidyl-prolyl cis-trans iso  (108 aa)
 initn: 736 init1: 736 opt: 736  Z-score: 980.5  bits: 186.5 E(85289): 7.1e-48
Smith-Waterman score: 736; 100.0% identity (100.0% similar) in 108 aa overlap (1-108:1-108)

               10        20        30        40        50        60
pF1KB3 MGVQVETISPGDGRTFPKRGQTCVVHYTGMLEDGKKFDSSRDRNKPFKFMLGKQEVIRGW
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_000 MGVQVETISPGDGRTFPKRGQTCVVHYTGMLEDGKKFDSSRDRNKPFKFMLGKQEVIRGW
               10        20        30        40        50        60

               70        80        90       100        
pF1KB3 EEGVAQMSVGQRAKLTISPDYAYGATGHPGIIPPHATLVFDVELLKLE
       ::::::::::::::::::::::::::::::::::::::::::::::::
NP_000 EEGVAQMSVGQRAKLTISPDYAYGATGHPGIIPPHATLVFDVELLKLE
               70        80        90       100        

>>NP_004107 (OMIM: 600620) peptidyl-prolyl cis-trans iso  (108 aa)
 initn: 641 init1: 641 opt: 641  Z-score: 855.5  bits: 163.4 E(85289): 6.5e-41
Smith-Waterman score: 641; 83.3% identity (97.2% similar) in 108 aa overlap (1-108:1-108)

               10        20        30        40        50        60
pF1KB3 MGVQVETISPGDGRTFPKRGQTCVVHYTGMLEDGKKFDSSRDRNKPFKFMLGKQEVIRGW
       :::..:::::::::::::.::::::::::::..:::::::::::::::: .::::::.:.
NP_004 MGVEIETISPGDGRTFPKKGQTCVVHYTGMLQNGKKFDSSRDRNKPFKFRIGKQEVIKGF
               10        20        30        40        50        60

               70        80        90       100        
pF1KB3 EEGVAQMSVGQRAKLTISPDYAYGATGHPGIIPPHATLVFDVELLKLE
       :::.::::.::::::: .:: :::::::::.:::.:::.::::::.::
NP_004 EEGAAQMSLGQRAKLTCTPDVAYGATGHPGVIPPNATLIFDVELLNLE
               70        80        90       100        

>>XP_016859083 (OMIM: 600620) PREDICTED: peptidyl-prolyl  (79 aa)
 initn: 447 init1: 447 opt: 447  Z-score: 602.5  bits: 116.1 E(85289): 8e-27
Smith-Waterman score: 447; 81.0% identity (96.2% similar) in 79 aa overlap (30-108:1-79)

               10        20        30        40        50        60
pF1KB3 MGVQVETISPGDGRTFPKRGQTCVVHYTGMLEDGKKFDSSRDRNKPFKFMLGKQEVIRGW
                                    ::..:::::::::::::::: .::::::.:.
XP_016                              MLQNGKKFDSSRDRNKPFKFRIGKQEVIKGF
                                            10        20        30 

               70        80        90       100        
pF1KB3 EEGVAQMSVGQRAKLTISPDYAYGATGHPGIIPPHATLVFDVELLKLE
       :::.::::.::::::: .:: :::::::::.:::.:::.::::::.::
XP_016 EEGAAQMSLGQRAKLTCTPDVAYGATGHPGVIPPNATLIFDVELLNLE
              40        50        60        70         

>>XP_016859085 (OMIM: 600620) PREDICTED: peptidyl-prolyl  (79 aa)
 initn: 447 init1: 447 opt: 447  Z-score: 602.5  bits: 116.1 E(85289): 8e-27
Smith-Waterman score: 447; 81.0% identity (96.2% similar) in 79 aa overlap (30-108:1-79)

               10        20        30        40        50        60
pF1KB3 MGVQVETISPGDGRTFPKRGQTCVVHYTGMLEDGKKFDSSRDRNKPFKFMLGKQEVIRGW
                                    ::..:::::::::::::::: .::::::.:.
XP_016                              MLQNGKKFDSSRDRNKPFKFRIGKQEVIKGF
                                            10        20        30 

               70        80        90       100        
pF1KB3 EEGVAQMSVGQRAKLTISPDYAYGATGHPGIIPPHATLVFDVELLKLE
       :::.::::.::::::: .:: :::::::::.:::.:::.::::::.::
XP_016 EEGAAQMSLGQRAKLTCTPDVAYGATGHPGVIPPNATLIFDVELLNLE
              40        50        60        70         

>>XP_016859084 (OMIM: 600620) PREDICTED: peptidyl-prolyl  (79 aa)
 initn: 447 init1: 447 opt: 447  Z-score: 602.5  bits: 116.1 E(85289): 8e-27
Smith-Waterman score: 447; 81.0% identity (96.2% similar) in 79 aa overlap (30-108:1-79)

               10        20        30        40        50        60
pF1KB3 MGVQVETISPGDGRTFPKRGQTCVVHYTGMLEDGKKFDSSRDRNKPFKFMLGKQEVIRGW
                                    ::..:::::::::::::::: .::::::.:.
XP_016                              MLQNGKKFDSSRDRNKPFKFRIGKQEVIKGF
                                            10        20        30 

               70        80        90       100        
pF1KB3 EEGVAQMSVGQRAKLTISPDYAYGATGHPGIIPPHATLVFDVELLKLE
       :::.::::.::::::: .:: :::::::::.:::.:::.::::::.::
XP_016 EEGAAQMSLGQRAKLTCTPDVAYGATGHPGVIPPNATLIFDVELLNLE
              40        50        60        70         

>>NP_001309893 (OMIM: 600620) peptidyl-prolyl cis-trans   (79 aa)
 initn: 447 init1: 447 opt: 447  Z-score: 602.5  bits: 116.1 E(85289): 8e-27
Smith-Waterman score: 447; 81.0% identity (96.2% similar) in 79 aa overlap (30-108:1-79)

               10        20        30        40        50        60
pF1KB3 MGVQVETISPGDGRTFPKRGQTCVVHYTGMLEDGKKFDSSRDRNKPFKFMLGKQEVIRGW
                                    ::..:::::::::::::::: .::::::.:.
NP_001                              MLQNGKKFDSSRDRNKPFKFRIGKQEVIKGF
                                            10        20        30 

               70        80        90       100        
pF1KB3 EEGVAQMSVGQRAKLTISPDYAYGATGHPGIIPPHATLVFDVELLKLE
       :::.::::.::::::: .:: :::::::::.:::.:::.::::::.::
NP_001 EEGAAQMSLGQRAKLTCTPDVAYGATGHPGVIPPNATLIFDVELLNLE
              40        50        60        70         

>>XP_016859082 (OMIM: 600620) PREDICTED: peptidyl-prolyl  (79 aa)
 initn: 447 init1: 447 opt: 447  Z-score: 602.5  bits: 116.1 E(85289): 8e-27
Smith-Waterman score: 447; 81.0% identity (96.2% similar) in 79 aa overlap (30-108:1-79)

               10        20        30        40        50        60
pF1KB3 MGVQVETISPGDGRTFPKRGQTCVVHYTGMLEDGKKFDSSRDRNKPFKFMLGKQEVIRGW
                                    ::..:::::::::::::::: .::::::.:.
XP_016                              MLQNGKKFDSSRDRNKPFKFRIGKQEVIKGF
                                            10        20        30 

               70        80        90       100        
pF1KB3 EEGVAQMSVGQRAKLTISPDYAYGATGHPGIIPPHATLVFDVELLKLE
       :::.::::.::::::: .:: :::::::::.:::.:::.::::::.::
XP_016 EEGAAQMSLGQRAKLTCTPDVAYGATGHPGVIPPNATLIFDVELLNLE
              40        50        60        70         

>>NP_001309892 (OMIM: 600620) peptidyl-prolyl cis-trans   (79 aa)
 initn: 447 init1: 447 opt: 447  Z-score: 602.5  bits: 116.1 E(85289): 8e-27
Smith-Waterman score: 447; 81.0% identity (96.2% similar) in 79 aa overlap (30-108:1-79)

               10        20        30        40        50        60
pF1KB3 MGVQVETISPGDGRTFPKRGQTCVVHYTGMLEDGKKFDSSRDRNKPFKFMLGKQEVIRGW
                                    ::..:::::::::::::::: .::::::.:.
NP_001                              MLQNGKKFDSSRDRNKPFKFRIGKQEVIKGF
                                            10        20        30 

               70        80        90       100        
pF1KB3 EEGVAQMSVGQRAKLTISPDYAYGATGHPGIIPPHATLVFDVELLKLE
       :::.::::.::::::: .:: :::::::::.:::.:::.::::::.::
NP_001 EEGAAQMSLGQRAKLTCTPDVAYGATGHPGVIPPNATLIFDVELLNLE
              40        50        60        70         

>>NP_473374 (OMIM: 600620) peptidyl-prolyl cis-trans iso  (80 aa)
 initn: 426 init1: 407 opt: 415  Z-score: 560.4  bits: 108.3 E(85289): 1.8e-24
Smith-Waterman score: 415; 75.9% identity (89.9% similar) in 79 aa overlap (1-79:1-77)

               10        20        30        40        50        60
pF1KB3 MGVQVETISPGDGRTFPKRGQTCVVHYTGMLEDGKKFDSSRDRNKPFKFMLGKQEVIRGW
       :::..:::::::::::::.::::::::::::..:::::::::::::::: .::::::.:.
NP_473 MGVEIETISPGDGRTFPKKGQTCVVHYTGMLQNGKKFDSSRDRNKPFKFRIGKQEVIKGF
               10        20        30        40        50        60

               70        80        90       100        
pF1KB3 EEGVAQMSVGQRAKLTISPDYAYGATGHPGIIPPHATLVFDVELLKLE
       :::.::.  :  . : : :                             
NP_473 EEGAAQL--GPLSPLPICPHPC                          
                 70        80                          




108 residues in 1 query   sequences
60827320 residues in 85289 library sequences
 Tcomplib [36.3.4 Apr, 2011] (8 proc)
 start: Fri Nov  4 02:35:13 2016 done: Fri Nov  4 02:35:13 2016
 Total Scan time:  3.920 Total Display time: -0.020

Function used was FASTA [36.3.4 Apr, 2011]
Inquiries or Suggestions ?
Send a message to flexiclone AT kazusagt.com