hmmpfam - search one or more sequences against HMM database
HMMER 2.3.2 (Oct 2003)
Copyright (C) 1992-2003 HHMI/Washington University School of Medicine
Freely distributed under the GNU General Public License (GPL)
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HMM file:                 /data/smart.HMMs.bin
Sequence file:            /tmp/20080307/iprscan-20080307-08581749/chunk_1/iprscan-20080307-08581749.nocrc
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Query sequence: pF1KB3413
Accession:      [none]
Description:    [none]

Scores for sequence family classification (score includes all domains):
Model    Description                                    Score    E-value  N 
-------- -----------                                    -----    ------- ---
SM00320                                                 297.7    8.4e-85   7

Parsed for domains:
Model    Domain  seq-f seq-t    hmm-f hmm-t      score  E-value
-------- ------- ----- -----    ----- -----      -----  -------
SM00320    1/7       4    44 ..     1    46 []    33.6  2.7e-05
SM00320    2/7      49    89 ..     1    46 []    42.1  7.4e-08
SM00320    3/7      94   133 ..     1    46 []    55.1  8.9e-12
SM00320    4/7     139   178 ..     1    46 []    41.4  1.2e-07
SM00320    5/7     183   222 ..     1    46 []    57.8  1.4e-12
SM00320    6/7     240   280 ..     1    46 []    25.8   0.0059
SM00320    7/7     291   332 ..     1    46 []    41.9  8.8e-08

Alignments of top-scoring domains:
SM00320: domain 1 of 7, from 4 to 44: score 33.6, E = 2.7e-05
                   *->t.kllrtlkgHtgespVtsvafspdggssdspnllasgs.DgtirlW
                      +  ll   ++H + s+++ +a++p g      +llas+++D+ ir+W
   pF1KB3413     4    SlVLLGRVPAHPD-SRCWFLAWNPAG------TLLASCGgDRRIRIW 43   

                   d<-*
                       
   pF1KB3413    44 G    44   

SM00320: domain 2 of 7, from 49 to 89: score 42.1, E = 7.4e-08
                   *->t.kllrtlk.gHtgespVtsvafspdggssdspnllasgs.Dgtirl
                      ++ + ++l++gH+    V+ va+sp g      n+las+s D t ++
   pF1KB3413    49    SwICKSVLSeGHQR--TVRKVAWSPCG------NYLASASfDATTCI 87   

                   Wd<-*
                   W+   
   pF1KB3413    88 WK    89   

SM00320: domain 3 of 7, from 94 to 133: score 55.1, E = 8.9e-12
                   *->t.kllrtlkgHtgespVtsvafspdggssdspnllasgs.DgtirlW
                      + +++ tl+gH++  +V sva+ p+g      nlla++s+D+++ +W
   pF1KB3413    94    DfECVTTLEGHEN--EVKSVAWAPSG------NLLATCSrDKSVWVW 132  

                   d<-*
                   +   
   pF1KB3413   133 E    133  

SM00320: domain 4 of 7, from 139 to 178: score 41.4, E = 1.2e-07
                   *->t.kllrtlkgHtgespVtsvafspdggssdspnllasgs.DgtirlW
                      + +++++l+ Ht+  +V +v ++p+       +llas+s D t++l+
   pF1KB3413   139    EyECVSVLNSHTQ--DVKHVVWHPSQ------ELLASASyDDTVKLY 177  

                   d<-*
                       
   pF1KB3413   178 R    178  

SM00320: domain 5 of 7, from 183 to 222: score 57.8, E = 1.4e-12
                   *->t.kllrtlkgHtgespVtsvafspdggssdspnllasgs.DgtirlW
                      ++ +++tl+gH++   V+s+af+p+g      ++las+s+D+t+r+W
   pF1KB3413   183    DwVCCATLEGHES--TVWSLAFDPSG------QRLASCSdDRTVRIW 221  

                   d<-*
                       
   pF1KB3413   222 R    222  

SM00320: domain 6 of 7, from 240 to 280: score 25.8, E = 0.0059
                   *->t.kllrtlk.gHtgespVtsvafspdggssdspnllasgs.Dgtirl
                      ++k+++tl++ H+    ++++a+++          la++++D  ir+
   pF1KB3413   240    SwKCICTLSgFHSR--TIYDIAWCQLT------GALATACgDDAIRV 278  

                   Wd<-*
                   +    
   pF1KB3413   279 FQ    280  

SM00320: domain 7 of 7, from 291 to 332: score 41.9, E = 8.8e-08
                   *->t.kllrtlk.gHtgespVtsvafspdggssdspnllasgs.Dgtirl
                      t +l++ l+++H++  +V++va++p       p llas+s+Dg + +
   pF1KB3413   291    TfSLTAHLHqAHSQ--DVNCVAWNPKE-----PGLLASCSdDGEVAF 330  

                   Wd<-*
                   W+   
   pF1KB3413   331 WK    332  

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