Result of FASTA (ccds) for pF1KA1408
FASTA searches a protein or DNA sequence data bank 36.3.4 Apr, 2011
Please cite:
W.R. Pearson & D.J. Lipman PNAS (1988) 85:2444-2448

Query: pF1KA1408, 1272 aa
  1>>>pF1KA1408 1272 - 1272 aa - 1272 aa
Library: human.CCDS.faa
  18511270 residues in 32554 sequences

Statistics:  Expectation_n fit: rho(ln(x))= 11.2823+/-0.00143; mu= -3.2729+/- 0.086
 mean_var=450.5534+/-89.148, 0's: 0 Z-trim(111.3): 47  B-trim: 0 in 0/52
 Lambda= 0.060423
 statistics sampled from 12257 (12277) to 12257 sequences
Algorithm: FASTA (3.7 Nov 2010) [optimized]
Parameters: BL50 matrix (15:-5), open/ext: -10/-2
 ktup: 2, E-join: 1 (0.691), E-opt: 0.2 (0.377), width:  16
 Scan time:  4.510

The best scores are:                                      opt bits E(32554)
CCDS7086.1 UPF2 gene_id:26019|Hs108|chr10          (1272) 8439 751.8 2.6e-216


>>CCDS7086.1 UPF2 gene_id:26019|Hs108|chr10               (1272 aa)
 initn: 8439 init1: 8439 opt: 8439  Z-score: 3996.9  bits: 751.8 E(32554): 2.6e-216
Smith-Waterman score: 8439; 100.0% identity (100.0% similar) in 1272 aa overlap (1-1272:1-1272)

               10        20        30        40        50        60
pF1KA1 MPAERKKPASMEEKDSLPNNKEKDCSERRTVSSKERPKDDIKLTAKKEVSKAPEDKKKRL
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS70 MPAERKKPASMEEKDSLPNNKEKDCSERRTVSSKERPKDDIKLTAKKEVSKAPEDKKKRL
               10        20        30        40        50        60

               70        80        90       100       110       120
pF1KA1 EDDKRKKEDKERKKKDEEKVKAEEESKKKEEEEKKKHQEEERKKQEEQAKRQQEEEAAAQ
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS70 EDDKRKKEDKERKKKDEEKVKAEEESKKKEEEEKKKHQEEERKKQEEQAKRQQEEEAAAQ
               70        80        90       100       110       120

              130       140       150       160       170       180
pF1KA1 MKEKEESIQLHQEAWERHHLRKELRSKNQNAPDSRPEENFFSRLDSSLKKNTAFVKKLKT
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS70 MKEKEESIQLHQEAWERHHLRKELRSKNQNAPDSRPEENFFSRLDSSLKKNTAFVKKLKT
              130       140       150       160       170       180

              190       200       210       220       230       240
pF1KA1 ITEQQRDSLSHDFNGLNLSKYIAEAVASIVEAKLKISDVNCAVHLCSLFHQRYADFAPSL
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS70 ITEQQRDSLSHDFNGLNLSKYIAEAVASIVEAKLKISDVNCAVHLCSLFHQRYADFAPSL
              190       200       210       220       230       240

              250       260       270       280       290       300
pF1KA1 LQVWKKHFEARKEEKTPNITKLRTDLRFIAELTIVGIFTDKEGLSLIYEQLKNIINADRE
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS70 LQVWKKHFEARKEEKTPNITKLRTDLRFIAELTIVGIFTDKEGLSLIYEQLKNIINADRE
              250       260       270       280       290       300

              310       320       330       340       350       360
pF1KA1 SHTHVSVVISFCRHCGDDIAGLVPRKVKSAAEKFNLSFPPSEIISPEKQQPFQNLLKEYF
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS70 SHTHVSVVISFCRHCGDDIAGLVPRKVKSAAEKFNLSFPPSEIISPEKQQPFQNLLKEYF
              310       320       330       340       350       360

              370       380       390       400       410       420
pF1KA1 TSLTKHLKRDHRELQNTERQNRRILHSKGELSEDRHKQYEEFAMSYQKLLANSQSLADLL
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS70 TSLTKHLKRDHRELQNTERQNRRILHSKGELSEDRHKQYEEFAMSYQKLLANSQSLADLL
              370       380       390       400       410       420

              430       440       450       460       470       480
pF1KA1 DENMPDLPQDKPTPEEHGPGIDIFTPGKPGEYDLEGGIWEDEDARNFYENLIDLKAFVPA
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS70 DENMPDLPQDKPTPEEHGPGIDIFTPGKPGEYDLEGGIWEDEDARNFYENLIDLKAFVPA
              430       440       450       460       470       480

              490       500       510       520       530       540
pF1KA1 ILFKDNEKSCQNKESNKDDTKEAKESKENKEVSSPDDLELELENLEINDDTLELEGGDEA
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS70 ILFKDNEKSCQNKESNKDDTKEAKESKENKEVSSPDDLELELENLEINDDTLELEGGDEA
              490       500       510       520       530       540

              550       560       570       580       590       600
pF1KA1 EDLTKKLLDEQEQEDEEASTGSHLKLIVDAFLQQLPNCVNRDLIDKAAMDFCMNMNTKAN
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS70 EDLTKKLLDEQEQEDEEASTGSHLKLIVDAFLQQLPNCVNRDLIDKAAMDFCMNMNTKAN
              550       560       570       580       590       600

              610       620       630       640       650       660
pF1KA1 RKKLVRALFIVPRQRLDLLPFYARLVATLHPCMSDVAEDLCSMLRGDFRFHVRKKDQINI
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS70 RKKLVRALFIVPRQRLDLLPFYARLVATLHPCMSDVAEDLCSMLRGDFRFHVRKKDQINI
              610       620       630       640       650       660

              670       680       690       700       710       720
pF1KA1 ETKNKTVRFIGELTKFKMFTKNDTLHCLKMLLSDFSHHHIEMACTLLETCGRFLFRSPES
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS70 ETKNKTVRFIGELTKFKMFTKNDTLHCLKMLLSDFSHHHIEMACTLLETCGRFLFRSPES
              670       680       690       700       710       720

              730       740       750       760       770       780
pF1KA1 HLRTSVLLEQMMRKKQAMHLDARYVTMVENAYYYCNPPPAEKTVKKKRPPLQEYVRKLLY
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS70 HLRTSVLLEQMMRKKQAMHLDARYVTMVENAYYYCNPPPAEKTVKKKRPPLQEYVRKLLY
              730       740       750       760       770       780

              790       800       810       820       830       840
pF1KA1 KDLSKVTTEKVLRQMRKLPWQDQEVKDYVICCMINIWNVKYNSIHCVANLLAGLVLYQED
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS70 KDLSKVTTEKVLRQMRKLPWQDQEVKDYVICCMINIWNVKYNSIHCVANLLAGLVLYQED
              790       800       810       820       830       840

              850       860       870       880       890       900
pF1KA1 VGIHVVDGVLEDIRLGMEVNQPKFNQRRISSAKFLGELYNYRMVESAVIFRTLYSFTSFG
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS70 VGIHVVDGVLEDIRLGMEVNQPKFNQRRISSAKFLGELYNYRMVESAVIFRTLYSFTSFG
              850       860       870       880       890       900

              910       920       930       940       950       960
pF1KA1 VNPDGSPSSLDPPEHLFRIRLVCTILDTCGQYFDRGSSKRKLDCFLVYFQRYVWWKKSLE
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS70 VNPDGSPSSLDPPEHLFRIRLVCTILDTCGQYFDRGSSKRKLDCFLVYFQRYVWWKKSLE
              910       920       930       940       950       960

              970       980       990      1000      1010      1020
pF1KA1 VWTKDHPFPIDIDYMISDTLELLRPKIKLCNSLEESIRQVQDLEREFLIKLGLVNDKDSK
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS70 VWTKDHPFPIDIDYMISDTLELLRPKIKLCNSLEESIRQVQDLEREFLIKLGLVNDKDSK
              970       980       990      1000      1010      1020

             1030      1040      1050      1060      1070      1080
pF1KA1 DSMTEGENLEEDEEEEEGGAETEEQSGNESEVNEPEEEEGSDNDDDEGEEEEEENTDYLT
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS70 DSMTEGENLEEDEEEEEGGAETEEQSGNESEVNEPEEEEGSDNDDDEGEEEEEENTDYLT
             1030      1040      1050      1060      1070      1080

             1090      1100      1110      1120      1130      1140
pF1KA1 DSNKENETDEENTEVMIKGGGLKHVPCVEDEDFIQALDKMMLENLQQRSGESVKVHQLDV
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS70 DSNKENETDEENTEVMIKGGGLKHVPCVEDEDFIQALDKMMLENLQQRSGESVKVHQLDV
             1090      1100      1110      1120      1130      1140

             1150      1160      1170      1180      1190      1200
pF1KA1 AIPLHLKSQLRKGPPLGGGEGEAESADTMPFVMLTRKGNKQQFKILNVPMSSQLAANHWN
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS70 AIPLHLKSQLRKGPPLGGGEGEAESADTMPFVMLTRKGNKQQFKILNVPMSSQLAANHWN
             1150      1160      1170      1180      1190      1200

             1210      1220      1230      1240      1250      1260
pF1KA1 QQQAEQEERMRMKKLTLDINERQEQEDYQEMLQSLAQRPAPANTNRERRPRYQHPKGAPN
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS70 QQQAEQEERMRMKKLTLDINERQEQEDYQEMLQSLAQRPAPANTNRERRPRYQHPKGAPN
             1210      1220      1230      1240      1250      1260

             1270  
pF1KA1 ADLIFKTGGRRR
       ::::::::::::
CCDS70 ADLIFKTGGRRR
             1270  




1272 residues in 1 query   sequences
18511270 residues in 32554 library sequences
 Tcomplib [36.3.4 Apr, 2011] (8 proc)
 start: Fri Nov  4 01:33:34 2016 done: Fri Nov  4 01:33:35 2016
 Total Scan time:  4.510 Total Display time:  0.050

Function used was FASTA [36.3.4 Apr, 2011]
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