Result of GENSCAN for pF1KA0101
GENSCAN 1.0	Date run:  4-Nov-116	Time: 00:27:32

Sequence gi568815583r:64266033_64481371 : 215339 bp : 41.61% C+G : Isochore 1 ( 0 - 43 C+G%)

Parameter matrix: HumanIso.smat

Predicted genes/exons:

Gn.Ex Type S .Begin ...End .Len Fr Ph I/Ac Do/T CodRg P.... Tscr..
----- ---- - ------ ------ ---- -- -- ---- ---- ----- ----- ------

 1.03 PlyA -   1946   1941    6                               1.05
 1.02 Term -  22704  22622   83  1  2   53   37   122 0.381   0.48
 1.01 Init -  34467  34287  181  0  1   82   87    98 0.873   8.49
 1.00 Prom -  42387  42348   40                              -3.85

 2.00 Prom +  46367  46406   40                              -5.95
 2.01 Init +  46659  47268  610  2  1   71   60   136 0.321   4.63
 2.02 Intr +  50733  50876  144  1  0   84   55    73 0.360   2.93
 2.03 Term +  54178  54260   83  2  2  105   37   104 0.454   3.88
 2.04 PlyA +  54746  54751    6                               1.05

 3.00 Prom +  60309  60348   40                              -7.05
 3.01 Sngl +  61535  62392  858  1  0   88   43   678 0.929  58.88
 3.02 PlyA +  62412  62417    6                               1.05

 4.00 Prom +  62947  62986   40                              -6.15
 4.01 Sngl +  63040  65283 2244  0  0   44   38   829 0.986  66.75
 4.02 PlyA +  65410  65415    6                               1.05

 5.05 PlyA -  66203  66198    6                               1.05
 5.04 Term - 100043  99998   46  1  1  114   42    56 0.019  -0.70
 5.03 Intr - 110873 110711  163  0  1   62  106    91 0.142   6.41
 5.02 Intr - 115006 114926   81  2  0  108  116    78 0.553  11.29
 5.01 Init - 115339 115294   46  1  1   78  100    45 0.454   5.60
 5.00 Prom - 118422 118383   40                              -2.85

 6.00 Prom + 121447 121486   40                              -7.05
 6.01 Init + 121832 121932  101  1  2  101   33   170 0.739  10.95
 6.02 Intr + 127914 128083  170  0  2   24  115   164 0.994  11.37
 6.03 Intr + 129366 129499  134  1  2   56  113   108 0.998   9.54
 6.04 Intr + 131574 131786  213  2  0   72   59    87 0.810   2.19
 6.05 Intr + 134711 134789   79  1  1  106   74    73 0.964   5.91
 6.06 Intr + 140298 140427  130  1  1   71   52   144 0.992   7.93
 6.07 Intr + 143581 143796  216  1  0   86  111   317 0.995  30.50
 6.08 Intr + 148053 148179  127  0  1   46   92   116 0.978   7.56
 6.09 Intr + 152509 152696  188  0  2   46  116   130 0.960   9.17
 6.10 Intr + 157999 158123  125  1  2   41   87    97 0.409   4.21
 6.11 Intr + 159508 159599   92  2  2   49  109    55 0.370   2.49
 6.12 Intr + 178974 179076  103  2  1   62   84    76 0.275   3.43
 6.13 Term + 188965 189032   68  2  2  116   46    73 0.440   3.02
 6.14 PlyA + 189775 189780    6                               1.05

 7.05 PlyA - 190173 190168    6                               1.05
 7.04 Term - 192458 192358  101  0  2   88   42    92 0.010   1.91
 7.03 Intr - 194584 194467  118  1  1   30  105   151 0.010  10.12
 7.02 Intr - 204401 204322   80  0  2   92   38    26 0.009  -3.65
 7.01 Init - 211480 211420   61  1  1   36  110    71 0.513   5.56

Suboptimal exons with probability > 0.800

Exnum Type S .Begin ...End .Len Fr Ph B/Ac Do/T CodRg P.... Tscr..
----- ---- - ------ ------ ---- -- -- ---- ---- ----- ----- ------

S.001 Sngl - 107669 107466  204  2  0   43   48   289 0.902  13.34
S.002 Term + 194476 194588  113  2  2   50   55   229 0.835  13.54


Predicted peptide sequence(s):

Predicted coding sequence(s):


>gi568815583r:64266033_64481371|GENSCAN_predicted_peptide_1|87_aa
MDHPSREKDERQRTTKPMAQRSAHCSRPSGSSSSSGVLMVGPNFRVGKKIGCGNFGELRL
EGGKAFVKESGAYCQLLWAFKEQVMLD

>gi568815583r:64266033_64481371|GENSCAN_predicted_CDS_1|264_bp
atggaccatcctagtagggaaaaggatgaaagacaacggacaactaaacccatggcacaa
aggagtgcacactgctctcgaccatctggctcctcatcgtcctctggggttcttatggtg
ggacccaacttcagggttggcaagaagataggatgtgggaacttcggagagctcagatta
gaaggcggcaaagcttttgtcaaagaaagtggagcttactgccagctgttgtgggctttc
aaagagcaggtgatgctggattga

>gi568815583r:64266033_64481371|GENSCAN_predicted_peptide_2|278_aa
MGKDFMSKTPKAMATKAKIDKWDLIKLNSCCTAKETIIRVNRQPTEWEKIFAIYPSDKGL
ISRIYKELKQIYKKKTNNPIKKWAKDINRHFSKEDIYAANKHEKMLIITVIREMQIKTTM
RYHLTPVRMVIIKKSGNRCWRGCGEIGMLLHCWWECTLVQPLWKTVWQFLKDLELEIPFD
PAIPLLGIYPKGYKSFYYEDTCTHSRHCMEKHHENLCPVLFHSEYPCIQPPVTYPLLAQS
IMTLLRGPPYSYNSTETGTRQKNKCINEEVTTLRSTGY

>gi568815583r:64266033_64481371|GENSCAN_predicted_CDS_2|837_bp
atgggcaaagacttcatgtctaaaacgccaaaagcaatggcaacaaaagccaaaattgac
aaatgggatctaattaaactaaacagctgctgcacagcaaaagaaactatcatcagagtg
aacaggcaacctacagaatgggagaaaatttttgcaatctatccatctgacaaagggcta
atatccagaatctacaaagaacttaaacaaatttacaagaaaaaaacaaacaaccccatc
aaaaagtgggcaaaggatataaacagacacttctcaaaagaagacatttatgcagccaac
aaacatgaaaaaatgctcatcatcactgtcattagagaaatgcaaatcaaaaccacaatg
agataccatctcacgccagttagaatggtgatcattaaaaagtcaggaaacagatgctgg
agaggatgtggagaaataggaatgcttttacactgttggtgggagtgtacattagttcaa
ccattgtggaagacagtgtggcaattcctcaaggatctagaactagaaataccatttgac
ccagcaatcccattactgggtatatacccaaagggttataaatcattctactatgaagac
acatgcacacattccagacattgtatggaaaagcatcatgaaaatctctgtcctgttctg
ttccattctgaatacccgtgcatacagcccccagtcacgtaccccctgcttgctcaatcg
atcatgaccctcttacgtggacccccttacagttataattccaccgaaacaggcacacgt
caaaaaaacaaatgcattaatgaagaggttacaacgctcagaagtaccggatattga

>gi568815583r:64266033_64481371|GENSCAN_predicted_peptide_3|285_aa
MGKKQNRKTGNSKTQSASPPPKERSSSPATEQSCMENDFDEVREEGFRRSNYSELREDIQ
TKGKEVENFEKNLEECITRITNTEKCLKELMELKTKARELREECRSLRSRCDQLEERVSA
MEDEMNEMKREGKFREKRIKRNEQSLQEIWDYVKRPNLRLIGVPESDGENGTKLENTLQD
IIQENFPNLARQANVQIQEIQRTPQRYSSRRATPRHIIVRFTKVEMKEKMLRAAREKGRV
TLKGKPIRLTADLSAETLQARREWGQYSTFLKKRIFNPEFHIQPN

>gi568815583r:64266033_64481371|GENSCAN_predicted_CDS_3|858_bp
atggggaaaaaacagaacagaaaaactggaaactctaaaacgcagagcgcctctcctcct
ccaaaggaacgcagttcctcaccagcaacggaacaaagctgtatggagaatgattttgac
gaggtgagagaagaaggcttcagacgatcaaattactctgagctacgggaggacattcaa
accaaaggcaaagaagttgaaaactttgaaaaaaatttagaagaatgtataactagaata
accaatacagagaagtgcttaaaggagctgatggagctgaaaaccaaggctcgagaacta
cgtgaagaatgcagaagcctcaggagccgatgcgatcaactggaagaaagggtatcagca
atggaagatgaaatgaatgaaatgaagcgagaagggaagtttagagaaaaaagaataaaa
agaaatgagcaaagcctccaagaaatatgggactatgtgaaaagaccaaatctacgtctg
attggtgtacctgaaagtgatggggagaatggaaccaagttggaaaacactctgcaggat
attatacaggagaacttccccaatctagcaaggcaggccaacgttcagattcaggaaata
cagagaacgccacaaagatactcctcgagaagagcaactccaagacacataattgtcaga
ttcaccaaagttgaaatgaaggaaaaaatgttaagggcagccagagagaaaggtcgggtt
accctcaaagggaagcccatcagactaacagcggatctctcggcagaaaccctacaagcc
agaagagagtggggccaatattcaacattcttaaagaaaagaattttcaacccagaattt
catatccagccaaactaa

>gi568815583r:64266033_64481371|GENSCAN_predicted_peptide_4|747_aa
MGDFNTLLSTLDRSTRQKVNKDTQELNSALHQADLTDIYRTLHPKSTEYTFFSAPHHTYS
KIDHIVGSKTLLSKCKRTEITTNYLSDHSAIKLELRIKNLTQSHSTTWKLNNLLLNDYWV
HNEMKAEIKMFFETNENKDTTYQNLWDAFKAVCRGKFIALNAHKRKQERSKIDILTSQLK
ELEKQEQTHSKASRRQEITKIRAELKEIETQKTLQKINESRSWFFERINKIDRPLARLIK
KKREKNQIDTIKNDKGDITTDPTEIQTTIREYYKHLYTNKLENLEEMDTFLDTYTLPRLD
QEEVESLNRPVTGAEIVAIINSLPTKKSPGPDGFTAEFYQRYKEELVPFLLKLFQSIEKE
GILPNSFYEASIILIPKPGRDTTKKENFRPISLMNIDAKILNKILANRIQQHIKKLIHHD
QVGFIPGMQGWFNIRKAINAIQHINRAKDKNHMIISIDAEKAFDKIQQPFMLKTLNKLGI
DGTYFKIIRAIYDKPTANIILNGQKLEAFPLKTGTRQGCPLSLLLFNIVLEVLARAIRQE
KEIKGIQLGKEEVKLSLFADDMIVYLENPIVSAQNLLKLISNFSKVSGYKINVQKSQAFL
YTNNRQTESQIMSELPFTIASKRIKYLGIQLTRDVKDLFKENYKPLLKEIKEDTNKWKNI
PCSWVGRINIVKMAILPKVIYRFNAIPIKLPMTFFTELEKTTLKFIWNQKRARIAKSILS
QKNKAGGITLPDFKLYYKATVTKTAWY

>gi568815583r:64266033_64481371|GENSCAN_predicted_CDS_4|2244_bp
atgggagactttaacaccctactgtcaacattagacagatcaacgagacagaaagtcaac
aaggatacccaggaattgaactcagctctgcaccaagcggacctaacagacatctacaga
actctccatcccaaatcaacagaatatacatttttttcagcaccacaccacacctattcc
aaaattgaccacatagttggaagtaaaactctcctcagcaaatgtaaaagaacagaaatt
acaacaaactatctctcagaccacagtgcaatcaaactagaactcaggattaagaatctc
actcaaagccactcaactacatggaaactgaacaacctgctcctgaatgactactgggta
cataacgaaatgaaggcagaaataaagatgttctttgaaaccaacgagaacaaagacaca
acataccagaatctctgggatgcattcaaagcagtgtgtagagggaaatttatagcacta
aatgcccacaagagaaagcaggaaagatccaaaattgacatcctaacatcacaattaaaa
gaactagaaaagcaagagcaaacacattcaaaagctagcagaaggcaagaaataactaaa
atcagagcagaactgaaggaaatagagacacaaaaaacccttcaaaaaatcaatgaatcc
aggagctggttttttgaaaggatcaacaaaattgatagaccgctagcaagactaataaag
aaaaaaagagagaagaatcaaatagacacaataaaaaatgataaaggggatatcaccacc
gatcccacagaaatacaaactaccatcagagaatactacaaacacctctacacaaataaa
ctagaaaatctagaagaaatggatacattcctcgacacatacactctcccaagactagac
caggaagaagttgaatctctgaatagaccagtaacaggagctgaaattgtggcaataatc
aatagtttaccaaccaaaaagagtccaggaccagatggattcacagccgaattctaccag
aggtacaaggaggaactggtaccattccttctgaaactattccaatcaatagaaaaagag
ggaatcctccctaactcattttatgaggccagcatcattctgataccaaagccgggcaga
gacacaaccaaaaaagagaattttagaccaatatccttgatgaacattgatgcaaaaatc
ctcaataaaatactggcaaaccgaatccagcagcacatcaaaaagcttatccaccatgat
caagtgggcttcatccctgggatgcaaggctggttcaatatacgcaaagcaataaatgca
atccagcatataaacagagccaaagacaaaaaccacatgattatctcaatagatgcagaa
aaggcctttgacaaaattcaacaacccttcatgctaaaaactctcaataaattaggtatt
gatgggacgtatttcaaaataataagagctatctatgacaaacccacagccaatatcata
ctgaatgggcaaaaactggaagcattccctttgaaaactggcacaagacagggatgccct
ctctcactgctcctattcaacatagtgttggaagttctggccagggcaatcaggcaggag
aaggaaataaaaggtattcaattaggaaaagaggaagtcaaattgtccctgtttgcagac
gacatgattgtttatctagaaaaccccatcgtctcagcccaaaatctccttaagctgata
agcaacttcagcaaagtctcaggatacaaaatcaatgtacaaaaatcacaagcattctta
tacaccaacaacagacaaacagagagccaaatcatgagtgaactcccattcacaattgct
tcaaagagaataaaatacctaggaatccaacttacaagggatgtgaaggacctcttcaag
gagaactacaaaccactgctcaaggaaataaaagaggatacaaacaaatggaagaacatt
ccatgctcatgggtaggaagaatcaatatagtgaaaatggccatactgcccaaggtaatt
tacagattcaatgccatccccatcaaactaccaatgactttcttcacagaattggaaaaa
actactttaaagttcatatggaaccaaaaaagagcccgcattgccaagtcaatcctaagc
caaaagaacaaagctggaggcatcacactacctgacttcaaactatactacaaggctaca
gtaaccaaaacagcatggtactag

>gi568815583r:64266033_64481371|GENSCAN_predicted_peptide_5|111_aa
MVRTKADSVPGTYRKVVAARAPRKVLGSSTSATNSTSVSSRKAENKYAGGNPVCVRPTPK
WQKGIGEFFRLSPKDSEKENQIPEEAGSSGLGKAKRKACPLQPDHTNDEKE

>gi568815583r:64266033_64481371|GENSCAN_predicted_CDS_5|336_bp
atggtgcggactaaagcagacagtgttccaggcacttacagaaaagtggtggctgctcga
gcccccagaaaggtgcttggttcttccacctctgccactaattcgacatcagtttcatcg
aggaaagctgaaaataaatatgcaggagggaaccccgtttgcgtgcgcccaactcccaag
tggcaaaaaggaattggagaattctttaggttgtcccctaaagattctgaaaaagagaat
cagattcctgaagaggcaggaagcagtggcttaggaaaagcaaagagaaaagcatgtcct
ttgcaacctgatcacacaaatgatgaaaaagaatag

>gi568815583r:64266033_64481371|GENSCAN_predicted_peptide_6|581_aa
MAVAGAVSGEPLVHWCTQQLRKTFGLDVSEEIIQYVLSIESAEEIREYVTDLLQGNEGKK
GQFIEELITKWQKNDQELISDPLQQCFKKDEILDGQKSGDHLKRGRKKGRNRQEVPAFTE
PDTTAEVKTPFDLAKAQENSNSVKKKTKFVNLYTREGQDRLAVLLPGRHPCDCLGQKHKL
INNCLICGRIVCEQEGSGPCLFCGTLVCTHEEQDILQRDSNKSQKLLKKLMSGVENSGKV
DISTKDLLPHQELRIKSGLEKAIKHKDKLLEFDRTSIRRTQVIDDESDYFASDSNQWLSK
LERETLQKREEELRELRHASRLSKKVTIDFAGRKILEEENSLAEYHSRLDETIQAIANGT
LNQPLTKLDRSSEEPLGVLVNPNMYQSPPQWVDHTGAASQKKAFRSSGFGLEFNSFQHQL
RIQDQEFQEGFDGGWCLSVHQPWASLLVRGIKRVEGRSWYTPHRGRLWIAATAKKPSPQE
VSELQATYRLLRGKDVEFPNDYPSGCLLGCVDLIDCLSQKQFKEQFPDISQESDSPFVFI
CKNPQEMVVKFPIKGNPKIWKLDSKIHQGAKKGLMKQNKAV

>gi568815583r:64266033_64481371|GENSCAN_predicted_CDS_6|1746_bp
atggcggtggctggggcggtgtccggggagccgctggtgcactggtgcacccagcagttg
cggaagactttcggcctggatgtcagcgaggagatcattcagtacgttttgtcaattgag
agtgctgaagagatacgagaatatgttactgatctcctccagggaaatgaaggcaaaaaa
ggtcaattcatagaagaacttataaccaaatggcaaaagaatgatcaggagttgatttcg
gatcctttgcagcagtgcttcaaaaaagatgaaattttagatgggcagaaatcaggcgac
catctaaagcggggtaggaagaaagggagaaacagacaggaagttcctgcatttactgaa
cctgacacgactgcagaggttaaaacaccttttgatttggccaaggcacaagagaacagc
aactccgtaaagaagaagacaaagtttgtcaatttatacacaagagagggacaggacagg
cttgcagtcctgctccctggtcgtcacccttgtgattgcctgggccagaagcacaagctc
atcaataactgtctgatctgtgggcgcattgtctgtgaacaagaaggctcaggcccttgc
ttattctgtggcactctggtgtgtactcatgaggaacaagatattttacagcgtgactca
aacaagagccagaaactgctaaagaaactcatgtcaggagtggagaattctggaaaggtg
gacatctctaccaaggaccttcttcctcatcaagaattgcgaattaagtctggtctggag
aaggctatcaagcataaagacaaactgttagagtttgacagaactagtattcgaaggacc
caagtcattgatgatgagtcagattactttgccagtgattctaaccaatggttgtccaaa
cttgagcgggaaaccttgcagaagcgagaggaggagctgagagaacttcgacacgcctct
cgactttctaagaaggtcaccattgactttgcaggaaggaagatcctggaagaagaaaat
tcactagcagagtatcatagcagactagatgagacaatacaggccattgccaatggaacc
ttgaaccagccactgaccaaattggatagatcttctgaagagcctttgggagttctggta
aatcccaacatgtaccagtcccctccccagtgggttgaccacacaggtgcagcctcacag
aagaaggctttccgttcttcaggatttggactagagttcaactcatttcagcaccagttg
cgaatccaggatcaagaatttcaggaaggctttgatggtggctggtgcctctctgtacat
cagccctgggcttctctgcttgtcagagggattaaaagggtggagggcagatcctggtac
accccccacagaggacgactttggatagcagccacagctaaaaaaccctcccctcaagaa
gtctcagaactccaggctacatatcgtcttcttcgtgggaaagatgtggaatttcctaat
gactatccgtcaggttgtcttctgggctgtgtggacctaattgactgcttgtcccagaag
caatttaaggagcagtttccagacatcagtcaagagtctgattctccatttgttttcatc
tgcaaaaatcctcaggaaatggttgtgaagtttcctattaaaggaaatccaaaaatctgg
aaattggattccaagatccatcaaggagcaaagaaggggttaatgaagcagaataaagct
gtctga

>gi568815583r:64266033_64481371|GENSCAN_predicted_peptide_7|119_aa
MKGEKGKGNKKNNEVEELEKGGYFRDTPLFVILRQMSSTCIFSIKNNPPPPPPPPRSGTT
RVTRKTRTLDCQALGSGFRACVESGAESLPTPAPDKHYPTELFAAMEMFYICAVQCRSR

>gi568815583r:64266033_64481371|GENSCAN_predicted_CDS_7|360_bp
atgaaaggagaaaagggaaagggtaacaagaaaaataatgaagtagaagagttagaaaag
ggagggtatttcagagatacccccttgttcgtcatacttcggcaaatgtcatcaacgtgc
attttcagcattaaaaataacccgccgccaccgccgccgccgccgcgatccgggacaacc
agagtcacccggaagacgcggacactggactgccaggccctcggatccggattccgcgct
tgtgtggagtctggagccgaaagtttgccaacccctgctccagacaagcactatccaaca
gaactttttgcagcgatggaaatgttctatatctgtgctgtccaatgcagaagtcgctag
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