Result of FASTA (omim) for pF1KA0011
FASTA searches a protein or DNA sequence data bank 36.3.4 Apr, 2011
Please cite:
W.R. Pearson & D.J. Lipman PNAS (1988) 85:2444-2448

Query: pF1KA0011, 911 aa
  1>>>pF1KA0011 911 - 911 aa - 911 aa
Library: /omim/omim.rfq.tfa
  60827320 residues in 85289 sequences

Statistics:  Expectation_n fit: rho(ln(x))= 9.6951+/-0.000371; mu= 1.3367+/- 0.023
 mean_var=263.8515+/-54.000, 0's: 0 Z-trim(121.4): 7  B-trim: 0 in 0/59
 Lambda= 0.078958
 statistics sampled from 37981 (37988) to 37981 sequences
Algorithm: FASTA (3.7 Nov 2010) [optimized]
Parameters: BL50 matrix (15:-5), open/ext: -10/-2
 ktup: 2, E-join: 1 (0.764), E-opt: 0.2 (0.445), width:  16
 Scan time: 15.740

The best scores are:                                      opt bits E(85289)
NP_001512 (OMIM: 604883) general transcription fac ( 911) 6365 739.0 2.4e-212
NP_001030598 (OMIM: 604883) general transcription  ( 911) 6365 739.0 2.4e-212
NP_001305838 (OMIM: 604883) general transcription  ( 922) 6365 739.0 2.4e-212
XP_005264329 (OMIM: 604883) PREDICTED: general tra ( 950) 6365 739.0 2.5e-212
XP_011531103 (OMIM: 604883) PREDICTED: general tra (1026) 6365 739.1 2.6e-212


>>NP_001512 (OMIM: 604883) general transcription factor   (911 aa)
 initn: 6365 init1: 6365 opt: 6365  Z-score: 3933.3  bits: 739.0 E(85289): 2.4e-212
Smith-Waterman score: 6365; 100.0% identity (100.0% similar) in 911 aa overlap (1-911:1-911)

               10        20        30        40        50        60
pF1KA0 MDTCGVGYVALGEAGPVGNMTVVDSPGQEVLNQLDVKTSSEMTSAEASVEMSLPTPLPGF
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 MDTCGVGYVALGEAGPVGNMTVVDSPGQEVLNQLDVKTSSEMTSAEASVEMSLPTPLPGF
               10        20        30        40        50        60

               70        80        90       100       110       120
pF1KA0 EDSPDQRRLPPEQESLSRLEQPDLSSEMSKVSKPRASKPGRKRGGRTRKGPKRPQQPNPP
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 EDSPDQRRLPPEQESLSRLEQPDLSSEMSKVSKPRASKPGRKRGGRTRKGPKRPQQPNPP
               70        80        90       100       110       120

              130       140       150       160       170       180
pF1KA0 SAPLVPGLLDQSNPLSTPMPKKRGRKSKAELLLLKLSKDLDRPESQSPKRPPEDFETPSG
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 SAPLVPGLLDQSNPLSTPMPKKRGRKSKAELLLLKLSKDLDRPESQSPKRPPEDFETPSG
              130       140       150       160       170       180

              190       200       210       220       230       240
pF1KA0 ERPRRRAAQVALLYLQELAEELSTALPAPVSCPEGPKVSSPTKPKKIRQPAACPGGEEVD
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 ERPRRRAAQVALLYLQELAEELSTALPAPVSCPEGPKVSSPTKPKKIRQPAACPGGEEVD
              190       200       210       220       230       240

              250       260       270       280       290       300
pF1KA0 GAPRDEDFFLQVEAEDVEESEGPSESSSEPEPVVPRSTPRGSTSGKQKPHCRGMAPNGLP
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 GAPRDEDFFLQVEAEDVEESEGPSESSSEPEPVVPRSTPRGSTSGKQKPHCRGMAPNGLP
              250       260       270       280       290       300

              310       320       330       340       350       360
pF1KA0 NHIMAPVWKCLHLTKDFREQKHSYWEFAEWIPLAWKWHLLSELEAAPYLPQEEKSPLFSV
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 NHIMAPVWKCLHLTKDFREQKHSYWEFAEWIPLAWKWHLLSELEAAPYLPQEEKSPLFSV
              310       320       330       340       350       360

              370       380       390       400       410       420
pF1KA0 QREGLPEDGTLYRINRFSSITAHPERWDVSFFTGGPLWALDWCPVPEGAGASQYVALFSS
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 QREGLPEDGTLYRINRFSSITAHPERWDVSFFTGGPLWALDWCPVPEGAGASQYVALFSS
              370       380       390       400       410       420

              430       440       450       460       470       480
pF1KA0 PDMNETHPLSQLHSGPGLLQLWGLGTLQQESCPGNRAHFVYGIACDNGCIWDLKFCPSGA
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 PDMNETHPLSQLHSGPGLLQLWGLGTLQQESCPGNRAHFVYGIACDNGCIWDLKFCPSGA
              430       440       450       460       470       480

              490       500       510       520       530       540
pF1KA0 WELPGTPRKAPLLPRLGLLALACSDGKVLLFSLPHPEALLAQQPPDAVKPAIYKVQCVAT
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 WELPGTPRKAPLLPRLGLLALACSDGKVLLFSLPHPEALLAQQPPDAVKPAIYKVQCVAT
              490       500       510       520       530       540

              550       560       570       580       590       600
pF1KA0 LQVGSMQATDPSECGQCLSLAWMPTRPHQHLAAGYYNGMVVFWNLPTNSPLQRIRLSDGS
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 LQVGSMQATDPSECGQCLSLAWMPTRPHQHLAAGYYNGMVVFWNLPTNSPLQRIRLSDGS
              550       560       570       580       590       600

              610       620       630       640       650       660
pF1KA0 LKLYPFQCFLAHDQAVRTLQWCKANSHFLVSAGSDRKIKFWDLRRPYEPINSIKRFLSTE
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 LKLYPFQCFLAHDQAVRTLQWCKANSHFLVSAGSDRKIKFWDLRRPYEPINSIKRFLSTE
              610       620       630       640       650       660

              670       680       690       700       710       720
pF1KA0 LAWLLPYNGVTVAQDNCYASYGLCGIHYIDAGYLGFKAYFTAPRKGTVWSLSGSDWLGTI
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 LAWLLPYNGVTVAQDNCYASYGLCGIHYIDAGYLGFKAYFTAPRKGTVWSLSGSDWLGTI
              670       680       690       700       710       720

              730       740       750       760       770       780
pF1KA0 AAGDISGELIAAILPDMALNPINVKRPVERRFPIYKADLIPYQDSPEGPDHSSASSGVPN
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 AAGDISGELIAAILPDMALNPINVKRPVERRFPIYKADLIPYQDSPEGPDHSSASSGVPN
              730       740       750       760       770       780

              790       800       810       820       830       840
pF1KA0 PPKARTYTETVNHHYLLFQDTDLGSFHDLLRREPMLRMQEGEGHSQLCLDRLQLEAIHKV
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 PPKARTYTETVNHHYLLFQDTDLGSFHDLLRREPMLRMQEGEGHSQLCLDRLQLEAIHKV
              790       800       810       820       830       840

              850       860       870       880       890       900
pF1KA0 RFSPNLDSYGWLVSGGQSGLVRIHFVRGLASPLGHRMQLESRAHFNAMFQPSSPTRRPGF
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 RFSPNLDSYGWLVSGGQSGLVRIHFVRGLASPLGHRMQLESRAHFNAMFQPSSPTRRPGF
              850       860       870       880       890       900

              910 
pF1KA0 SPTSHRLLPTP
       :::::::::::
NP_001 SPTSHRLLPTP
              910 

>>NP_001030598 (OMIM: 604883) general transcription fact  (911 aa)
 initn: 6365 init1: 6365 opt: 6365  Z-score: 3933.3  bits: 739.0 E(85289): 2.4e-212
Smith-Waterman score: 6365; 100.0% identity (100.0% similar) in 911 aa overlap (1-911:1-911)

               10        20        30        40        50        60
pF1KA0 MDTCGVGYVALGEAGPVGNMTVVDSPGQEVLNQLDVKTSSEMTSAEASVEMSLPTPLPGF
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 MDTCGVGYVALGEAGPVGNMTVVDSPGQEVLNQLDVKTSSEMTSAEASVEMSLPTPLPGF
               10        20        30        40        50        60

               70        80        90       100       110       120
pF1KA0 EDSPDQRRLPPEQESLSRLEQPDLSSEMSKVSKPRASKPGRKRGGRTRKGPKRPQQPNPP
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 EDSPDQRRLPPEQESLSRLEQPDLSSEMSKVSKPRASKPGRKRGGRTRKGPKRPQQPNPP
               70        80        90       100       110       120

              130       140       150       160       170       180
pF1KA0 SAPLVPGLLDQSNPLSTPMPKKRGRKSKAELLLLKLSKDLDRPESQSPKRPPEDFETPSG
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 SAPLVPGLLDQSNPLSTPMPKKRGRKSKAELLLLKLSKDLDRPESQSPKRPPEDFETPSG
              130       140       150       160       170       180

              190       200       210       220       230       240
pF1KA0 ERPRRRAAQVALLYLQELAEELSTALPAPVSCPEGPKVSSPTKPKKIRQPAACPGGEEVD
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 ERPRRRAAQVALLYLQELAEELSTALPAPVSCPEGPKVSSPTKPKKIRQPAACPGGEEVD
              190       200       210       220       230       240

              250       260       270       280       290       300
pF1KA0 GAPRDEDFFLQVEAEDVEESEGPSESSSEPEPVVPRSTPRGSTSGKQKPHCRGMAPNGLP
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 GAPRDEDFFLQVEAEDVEESEGPSESSSEPEPVVPRSTPRGSTSGKQKPHCRGMAPNGLP
              250       260       270       280       290       300

              310       320       330       340       350       360
pF1KA0 NHIMAPVWKCLHLTKDFREQKHSYWEFAEWIPLAWKWHLLSELEAAPYLPQEEKSPLFSV
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 NHIMAPVWKCLHLTKDFREQKHSYWEFAEWIPLAWKWHLLSELEAAPYLPQEEKSPLFSV
              310       320       330       340       350       360

              370       380       390       400       410       420
pF1KA0 QREGLPEDGTLYRINRFSSITAHPERWDVSFFTGGPLWALDWCPVPEGAGASQYVALFSS
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 QREGLPEDGTLYRINRFSSITAHPERWDVSFFTGGPLWALDWCPVPEGAGASQYVALFSS
              370       380       390       400       410       420

              430       440       450       460       470       480
pF1KA0 PDMNETHPLSQLHSGPGLLQLWGLGTLQQESCPGNRAHFVYGIACDNGCIWDLKFCPSGA
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 PDMNETHPLSQLHSGPGLLQLWGLGTLQQESCPGNRAHFVYGIACDNGCIWDLKFCPSGA
              430       440       450       460       470       480

              490       500       510       520       530       540
pF1KA0 WELPGTPRKAPLLPRLGLLALACSDGKVLLFSLPHPEALLAQQPPDAVKPAIYKVQCVAT
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 WELPGTPRKAPLLPRLGLLALACSDGKVLLFSLPHPEALLAQQPPDAVKPAIYKVQCVAT
              490       500       510       520       530       540

              550       560       570       580       590       600
pF1KA0 LQVGSMQATDPSECGQCLSLAWMPTRPHQHLAAGYYNGMVVFWNLPTNSPLQRIRLSDGS
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 LQVGSMQATDPSECGQCLSLAWMPTRPHQHLAAGYYNGMVVFWNLPTNSPLQRIRLSDGS
              550       560       570       580       590       600

              610       620       630       640       650       660
pF1KA0 LKLYPFQCFLAHDQAVRTLQWCKANSHFLVSAGSDRKIKFWDLRRPYEPINSIKRFLSTE
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 LKLYPFQCFLAHDQAVRTLQWCKANSHFLVSAGSDRKIKFWDLRRPYEPINSIKRFLSTE
              610       620       630       640       650       660

              670       680       690       700       710       720
pF1KA0 LAWLLPYNGVTVAQDNCYASYGLCGIHYIDAGYLGFKAYFTAPRKGTVWSLSGSDWLGTI
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 LAWLLPYNGVTVAQDNCYASYGLCGIHYIDAGYLGFKAYFTAPRKGTVWSLSGSDWLGTI
              670       680       690       700       710       720

              730       740       750       760       770       780
pF1KA0 AAGDISGELIAAILPDMALNPINVKRPVERRFPIYKADLIPYQDSPEGPDHSSASSGVPN
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 AAGDISGELIAAILPDMALNPINVKRPVERRFPIYKADLIPYQDSPEGPDHSSASSGVPN
              730       740       750       760       770       780

              790       800       810       820       830       840
pF1KA0 PPKARTYTETVNHHYLLFQDTDLGSFHDLLRREPMLRMQEGEGHSQLCLDRLQLEAIHKV
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 PPKARTYTETVNHHYLLFQDTDLGSFHDLLRREPMLRMQEGEGHSQLCLDRLQLEAIHKV
              790       800       810       820       830       840

              850       860       870       880       890       900
pF1KA0 RFSPNLDSYGWLVSGGQSGLVRIHFVRGLASPLGHRMQLESRAHFNAMFQPSSPTRRPGF
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 RFSPNLDSYGWLVSGGQSGLVRIHFVRGLASPLGHRMQLESRAHFNAMFQPSSPTRRPGF
              850       860       870       880       890       900

              910 
pF1KA0 SPTSHRLLPTP
       :::::::::::
NP_001 SPTSHRLLPTP
              910 

>>NP_001305838 (OMIM: 604883) general transcription fact  (922 aa)
 initn: 6365 init1: 6365 opt: 6365  Z-score: 3933.2  bits: 739.0 E(85289): 2.4e-212
Smith-Waterman score: 6365; 100.0% identity (100.0% similar) in 911 aa overlap (1-911:12-922)

                          10        20        30        40         
pF1KA0            MDTCGVGYVALGEAGPVGNMTVVDSPGQEVLNQLDVKTSSEMTSAEASV
                  :::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 MYRGQPFWGVLMDTCGVGYVALGEAGPVGNMTVVDSPGQEVLNQLDVKTSSEMTSAEASV
               10        20        30        40        50        60

      50        60        70        80        90       100         
pF1KA0 EMSLPTPLPGFEDSPDQRRLPPEQESLSRLEQPDLSSEMSKVSKPRASKPGRKRGGRTRK
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 EMSLPTPLPGFEDSPDQRRLPPEQESLSRLEQPDLSSEMSKVSKPRASKPGRKRGGRTRK
               70        80        90       100       110       120

     110       120       130       140       150       160         
pF1KA0 GPKRPQQPNPPSAPLVPGLLDQSNPLSTPMPKKRGRKSKAELLLLKLSKDLDRPESQSPK
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 GPKRPQQPNPPSAPLVPGLLDQSNPLSTPMPKKRGRKSKAELLLLKLSKDLDRPESQSPK
              130       140       150       160       170       180

     170       180       190       200       210       220         
pF1KA0 RPPEDFETPSGERPRRRAAQVALLYLQELAEELSTALPAPVSCPEGPKVSSPTKPKKIRQ
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 RPPEDFETPSGERPRRRAAQVALLYLQELAEELSTALPAPVSCPEGPKVSSPTKPKKIRQ
              190       200       210       220       230       240

     230       240       250       260       270       280         
pF1KA0 PAACPGGEEVDGAPRDEDFFLQVEAEDVEESEGPSESSSEPEPVVPRSTPRGSTSGKQKP
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 PAACPGGEEVDGAPRDEDFFLQVEAEDVEESEGPSESSSEPEPVVPRSTPRGSTSGKQKP
              250       260       270       280       290       300

     290       300       310       320       330       340         
pF1KA0 HCRGMAPNGLPNHIMAPVWKCLHLTKDFREQKHSYWEFAEWIPLAWKWHLLSELEAAPYL
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 HCRGMAPNGLPNHIMAPVWKCLHLTKDFREQKHSYWEFAEWIPLAWKWHLLSELEAAPYL
              310       320       330       340       350       360

     350       360       370       380       390       400         
pF1KA0 PQEEKSPLFSVQREGLPEDGTLYRINRFSSITAHPERWDVSFFTGGPLWALDWCPVPEGA
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 PQEEKSPLFSVQREGLPEDGTLYRINRFSSITAHPERWDVSFFTGGPLWALDWCPVPEGA
              370       380       390       400       410       420

     410       420       430       440       450       460         
pF1KA0 GASQYVALFSSPDMNETHPLSQLHSGPGLLQLWGLGTLQQESCPGNRAHFVYGIACDNGC
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 GASQYVALFSSPDMNETHPLSQLHSGPGLLQLWGLGTLQQESCPGNRAHFVYGIACDNGC
              430       440       450       460       470       480

     470       480       490       500       510       520         
pF1KA0 IWDLKFCPSGAWELPGTPRKAPLLPRLGLLALACSDGKVLLFSLPHPEALLAQQPPDAVK
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 IWDLKFCPSGAWELPGTPRKAPLLPRLGLLALACSDGKVLLFSLPHPEALLAQQPPDAVK
              490       500       510       520       530       540

     530       540       550       560       570       580         
pF1KA0 PAIYKVQCVATLQVGSMQATDPSECGQCLSLAWMPTRPHQHLAAGYYNGMVVFWNLPTNS
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 PAIYKVQCVATLQVGSMQATDPSECGQCLSLAWMPTRPHQHLAAGYYNGMVVFWNLPTNS
              550       560       570       580       590       600

     590       600       610       620       630       640         
pF1KA0 PLQRIRLSDGSLKLYPFQCFLAHDQAVRTLQWCKANSHFLVSAGSDRKIKFWDLRRPYEP
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 PLQRIRLSDGSLKLYPFQCFLAHDQAVRTLQWCKANSHFLVSAGSDRKIKFWDLRRPYEP
              610       620       630       640       650       660

     650       660       670       680       690       700         
pF1KA0 INSIKRFLSTELAWLLPYNGVTVAQDNCYASYGLCGIHYIDAGYLGFKAYFTAPRKGTVW
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 INSIKRFLSTELAWLLPYNGVTVAQDNCYASYGLCGIHYIDAGYLGFKAYFTAPRKGTVW
              670       680       690       700       710       720

     710       720       730       740       750       760         
pF1KA0 SLSGSDWLGTIAAGDISGELIAAILPDMALNPINVKRPVERRFPIYKADLIPYQDSPEGP
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 SLSGSDWLGTIAAGDISGELIAAILPDMALNPINVKRPVERRFPIYKADLIPYQDSPEGP
              730       740       750       760       770       780

     770       780       790       800       810       820         
pF1KA0 DHSSASSGVPNPPKARTYTETVNHHYLLFQDTDLGSFHDLLRREPMLRMQEGEGHSQLCL
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 DHSSASSGVPNPPKARTYTETVNHHYLLFQDTDLGSFHDLLRREPMLRMQEGEGHSQLCL
              790       800       810       820       830       840

     830       840       850       860       870       880         
pF1KA0 DRLQLEAIHKVRFSPNLDSYGWLVSGGQSGLVRIHFVRGLASPLGHRMQLESRAHFNAMF
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 DRLQLEAIHKVRFSPNLDSYGWLVSGGQSGLVRIHFVRGLASPLGHRMQLESRAHFNAMF
              850       860       870       880       890       900

     890       900       910 
pF1KA0 QPSSPTRRPGFSPTSHRLLPTP
       ::::::::::::::::::::::
NP_001 QPSSPTRRPGFSPTSHRLLPTP
              910       920  

>>XP_005264329 (OMIM: 604883) PREDICTED: general transcr  (950 aa)
 initn: 6365 init1: 6365 opt: 6365  Z-score: 3933.0  bits: 739.0 E(85289): 2.5e-212
Smith-Waterman score: 6365; 100.0% identity (100.0% similar) in 911 aa overlap (1-911:40-950)

                                             10        20        30
pF1KA0                               MDTCGVGYVALGEAGPVGNMTVVDSPGQEV
                                     ::::::::::::::::::::::::::::::
XP_005 RQNPLKSLLKHKVLAPSRIADSGQPFWGVLMDTCGVGYVALGEAGPVGNMTVVDSPGQEV
      10        20        30        40        50        60         

               40        50        60        70        80        90
pF1KA0 LNQLDVKTSSEMTSAEASVEMSLPTPLPGFEDSPDQRRLPPEQESLSRLEQPDLSSEMSK
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_005 LNQLDVKTSSEMTSAEASVEMSLPTPLPGFEDSPDQRRLPPEQESLSRLEQPDLSSEMSK
      70        80        90       100       110       120         

              100       110       120       130       140       150
pF1KA0 VSKPRASKPGRKRGGRTRKGPKRPQQPNPPSAPLVPGLLDQSNPLSTPMPKKRGRKSKAE
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_005 VSKPRASKPGRKRGGRTRKGPKRPQQPNPPSAPLVPGLLDQSNPLSTPMPKKRGRKSKAE
     130       140       150       160       170       180         

              160       170       180       190       200       210
pF1KA0 LLLLKLSKDLDRPESQSPKRPPEDFETPSGERPRRRAAQVALLYLQELAEELSTALPAPV
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_005 LLLLKLSKDLDRPESQSPKRPPEDFETPSGERPRRRAAQVALLYLQELAEELSTALPAPV
     190       200       210       220       230       240         

              220       230       240       250       260       270
pF1KA0 SCPEGPKVSSPTKPKKIRQPAACPGGEEVDGAPRDEDFFLQVEAEDVEESEGPSESSSEP
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_005 SCPEGPKVSSPTKPKKIRQPAACPGGEEVDGAPRDEDFFLQVEAEDVEESEGPSESSSEP
     250       260       270       280       290       300         

              280       290       300       310       320       330
pF1KA0 EPVVPRSTPRGSTSGKQKPHCRGMAPNGLPNHIMAPVWKCLHLTKDFREQKHSYWEFAEW
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_005 EPVVPRSTPRGSTSGKQKPHCRGMAPNGLPNHIMAPVWKCLHLTKDFREQKHSYWEFAEW
     310       320       330       340       350       360         

              340       350       360       370       380       390
pF1KA0 IPLAWKWHLLSELEAAPYLPQEEKSPLFSVQREGLPEDGTLYRINRFSSITAHPERWDVS
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_005 IPLAWKWHLLSELEAAPYLPQEEKSPLFSVQREGLPEDGTLYRINRFSSITAHPERWDVS
     370       380       390       400       410       420         

              400       410       420       430       440       450
pF1KA0 FFTGGPLWALDWCPVPEGAGASQYVALFSSPDMNETHPLSQLHSGPGLLQLWGLGTLQQE
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_005 FFTGGPLWALDWCPVPEGAGASQYVALFSSPDMNETHPLSQLHSGPGLLQLWGLGTLQQE
     430       440       450       460       470       480         

              460       470       480       490       500       510
pF1KA0 SCPGNRAHFVYGIACDNGCIWDLKFCPSGAWELPGTPRKAPLLPRLGLLALACSDGKVLL
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_005 SCPGNRAHFVYGIACDNGCIWDLKFCPSGAWELPGTPRKAPLLPRLGLLALACSDGKVLL
     490       500       510       520       530       540         

              520       530       540       550       560       570
pF1KA0 FSLPHPEALLAQQPPDAVKPAIYKVQCVATLQVGSMQATDPSECGQCLSLAWMPTRPHQH
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_005 FSLPHPEALLAQQPPDAVKPAIYKVQCVATLQVGSMQATDPSECGQCLSLAWMPTRPHQH
     550       560       570       580       590       600         

              580       590       600       610       620       630
pF1KA0 LAAGYYNGMVVFWNLPTNSPLQRIRLSDGSLKLYPFQCFLAHDQAVRTLQWCKANSHFLV
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_005 LAAGYYNGMVVFWNLPTNSPLQRIRLSDGSLKLYPFQCFLAHDQAVRTLQWCKANSHFLV
     610       620       630       640       650       660         

              640       650       660       670       680       690
pF1KA0 SAGSDRKIKFWDLRRPYEPINSIKRFLSTELAWLLPYNGVTVAQDNCYASYGLCGIHYID
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_005 SAGSDRKIKFWDLRRPYEPINSIKRFLSTELAWLLPYNGVTVAQDNCYASYGLCGIHYID
     670       680       690       700       710       720         

              700       710       720       730       740       750
pF1KA0 AGYLGFKAYFTAPRKGTVWSLSGSDWLGTIAAGDISGELIAAILPDMALNPINVKRPVER
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_005 AGYLGFKAYFTAPRKGTVWSLSGSDWLGTIAAGDISGELIAAILPDMALNPINVKRPVER
     730       740       750       760       770       780         

              760       770       780       790       800       810
pF1KA0 RFPIYKADLIPYQDSPEGPDHSSASSGVPNPPKARTYTETVNHHYLLFQDTDLGSFHDLL
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_005 RFPIYKADLIPYQDSPEGPDHSSASSGVPNPPKARTYTETVNHHYLLFQDTDLGSFHDLL
     790       800       810       820       830       840         

              820       830       840       850       860       870
pF1KA0 RREPMLRMQEGEGHSQLCLDRLQLEAIHKVRFSPNLDSYGWLVSGGQSGLVRIHFVRGLA
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_005 RREPMLRMQEGEGHSQLCLDRLQLEAIHKVRFSPNLDSYGWLVSGGQSGLVRIHFVRGLA
     850       860       870       880       890       900         

              880       890       900       910 
pF1KA0 SPLGHRMQLESRAHFNAMFQPSSPTRRPGFSPTSHRLLPTP
       :::::::::::::::::::::::::::::::::::::::::
XP_005 SPLGHRMQLESRAHFNAMFQPSSPTRRPGFSPTSHRLLPTP
     910       920       930       940       950

>>XP_011531103 (OMIM: 604883) PREDICTED: general transcr  (1026 aa)
 initn: 6365 init1: 6365 opt: 6365  Z-score: 3932.6  bits: 739.1 E(85289): 2.6e-212
Smith-Waterman score: 6365; 100.0% identity (100.0% similar) in 911 aa overlap (1-911:116-1026)

                                             10        20        30
pF1KA0                               MDTCGVGYVALGEAGPVGNMTVVDSPGQEV
                                     ::::::::::::::::::::::::::::::
XP_011 RQNPLKSLLKHKVLAPSRIADSGQPFWGVLMDTCGVGYVALGEAGPVGNMTVVDSPGQEV
          90       100       110       120       130       140     

               40        50        60        70        80        90
pF1KA0 LNQLDVKTSSEMTSAEASVEMSLPTPLPGFEDSPDQRRLPPEQESLSRLEQPDLSSEMSK
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_011 LNQLDVKTSSEMTSAEASVEMSLPTPLPGFEDSPDQRRLPPEQESLSRLEQPDLSSEMSK
         150       160       170       180       190       200     

              100       110       120       130       140       150
pF1KA0 VSKPRASKPGRKRGGRTRKGPKRPQQPNPPSAPLVPGLLDQSNPLSTPMPKKRGRKSKAE
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_011 VSKPRASKPGRKRGGRTRKGPKRPQQPNPPSAPLVPGLLDQSNPLSTPMPKKRGRKSKAE
         210       220       230       240       250       260     

              160       170       180       190       200       210
pF1KA0 LLLLKLSKDLDRPESQSPKRPPEDFETPSGERPRRRAAQVALLYLQELAEELSTALPAPV
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_011 LLLLKLSKDLDRPESQSPKRPPEDFETPSGERPRRRAAQVALLYLQELAEELSTALPAPV
         270       280       290       300       310       320     

              220       230       240       250       260       270
pF1KA0 SCPEGPKVSSPTKPKKIRQPAACPGGEEVDGAPRDEDFFLQVEAEDVEESEGPSESSSEP
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_011 SCPEGPKVSSPTKPKKIRQPAACPGGEEVDGAPRDEDFFLQVEAEDVEESEGPSESSSEP
         330       340       350       360       370       380     

              280       290       300       310       320       330
pF1KA0 EPVVPRSTPRGSTSGKQKPHCRGMAPNGLPNHIMAPVWKCLHLTKDFREQKHSYWEFAEW
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_011 EPVVPRSTPRGSTSGKQKPHCRGMAPNGLPNHIMAPVWKCLHLTKDFREQKHSYWEFAEW
         390       400       410       420       430       440     

              340       350       360       370       380       390
pF1KA0 IPLAWKWHLLSELEAAPYLPQEEKSPLFSVQREGLPEDGTLYRINRFSSITAHPERWDVS
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_011 IPLAWKWHLLSELEAAPYLPQEEKSPLFSVQREGLPEDGTLYRINRFSSITAHPERWDVS
         450       460       470       480       490       500     

              400       410       420       430       440       450
pF1KA0 FFTGGPLWALDWCPVPEGAGASQYVALFSSPDMNETHPLSQLHSGPGLLQLWGLGTLQQE
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_011 FFTGGPLWALDWCPVPEGAGASQYVALFSSPDMNETHPLSQLHSGPGLLQLWGLGTLQQE
         510       520       530       540       550       560     

              460       470       480       490       500       510
pF1KA0 SCPGNRAHFVYGIACDNGCIWDLKFCPSGAWELPGTPRKAPLLPRLGLLALACSDGKVLL
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_011 SCPGNRAHFVYGIACDNGCIWDLKFCPSGAWELPGTPRKAPLLPRLGLLALACSDGKVLL
         570       580       590       600       610       620     

              520       530       540       550       560       570
pF1KA0 FSLPHPEALLAQQPPDAVKPAIYKVQCVATLQVGSMQATDPSECGQCLSLAWMPTRPHQH
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_011 FSLPHPEALLAQQPPDAVKPAIYKVQCVATLQVGSMQATDPSECGQCLSLAWMPTRPHQH
         630       640       650       660       670       680     

              580       590       600       610       620       630
pF1KA0 LAAGYYNGMVVFWNLPTNSPLQRIRLSDGSLKLYPFQCFLAHDQAVRTLQWCKANSHFLV
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_011 LAAGYYNGMVVFWNLPTNSPLQRIRLSDGSLKLYPFQCFLAHDQAVRTLQWCKANSHFLV
         690       700       710       720       730       740     

              640       650       660       670       680       690
pF1KA0 SAGSDRKIKFWDLRRPYEPINSIKRFLSTELAWLLPYNGVTVAQDNCYASYGLCGIHYID
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_011 SAGSDRKIKFWDLRRPYEPINSIKRFLSTELAWLLPYNGVTVAQDNCYASYGLCGIHYID
         750       760       770       780       790       800     

              700       710       720       730       740       750
pF1KA0 AGYLGFKAYFTAPRKGTVWSLSGSDWLGTIAAGDISGELIAAILPDMALNPINVKRPVER
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_011 AGYLGFKAYFTAPRKGTVWSLSGSDWLGTIAAGDISGELIAAILPDMALNPINVKRPVER
         810       820       830       840       850       860     

              760       770       780       790       800       810
pF1KA0 RFPIYKADLIPYQDSPEGPDHSSASSGVPNPPKARTYTETVNHHYLLFQDTDLGSFHDLL
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_011 RFPIYKADLIPYQDSPEGPDHSSASSGVPNPPKARTYTETVNHHYLLFQDTDLGSFHDLL
         870       880       890       900       910       920     

              820       830       840       850       860       870
pF1KA0 RREPMLRMQEGEGHSQLCLDRLQLEAIHKVRFSPNLDSYGWLVSGGQSGLVRIHFVRGLA
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_011 RREPMLRMQEGEGHSQLCLDRLQLEAIHKVRFSPNLDSYGWLVSGGQSGLVRIHFVRGLA
         930       940       950       960       970       980     

              880       890       900       910 
pF1KA0 SPLGHRMQLESRAHFNAMFQPSSPTRRPGFSPTSHRLLPTP
       :::::::::::::::::::::::::::::::::::::::::
XP_011 SPLGHRMQLESRAHFNAMFQPSSPTRRPGFSPTSHRLLPTP
         990      1000      1010      1020      




911 residues in 1 query   sequences
60827320 residues in 85289 library sequences
 Tcomplib [36.3.4 Apr, 2011] (8 proc)
 start: Fri Nov  4 00:19:13 2016 done: Fri Nov  4 00:19:15 2016
 Total Scan time: 15.740 Total Display time:  0.150

Function used was FASTA [36.3.4 Apr, 2011]
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