hmmpfam - search one or more sequences against HMM database
HMMER 2.3.2 (Oct 2003)
Copyright (C) 1992-2003 HHMI/Washington University School of Medicine
Freely distributed under the GNU General Public License (GPL)
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HMM file: /data/Pfam.bin
Sequence file: /tmp/20080306/iprscan-20080306-21445334/chunk_1/iprscan-20080306-21445334.nocrc
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Query sequence: pF1KB9522
Accession: [none]
Description: [none]
Scores for sequence family classification (score includes all domains):
Model Description Score E-value N
-------- ----------- ----- ------- ---
PF00002.15.fs 7 transmembrane receptor (Secretin family) 81.8 1.7e-23 1
PF00002.15.ls 7 transmembrane receptor (Secretin family) 79.5 9.8e-21 1
PF01825.11.fs Latrophilin/CL-1-like GPS domain 68.1 1.7e-19 1
PF01825.11.ls Latrophilin/CL-1-like GPS domain 70.1 6.7e-18 1
Parsed for domains:
Model Domain seq-f seq-t hmm-f hmm-t score E-value
-------- ------- ----- ----- ----- ----- ----- -------
PF01825.11.fs 1/1 342 389 .. 1 48 [] 68.1 1.7e-19
PF01825.11.ls 1/1 342 389 .. 1 48 [] 70.1 6.7e-18
PF00002.15.fs 1/1 400 652 .. 1 286 [. 81.8 1.7e-23
PF00002.15.ls 1/1 400 659 .. 1 293 [] 79.5 9.8e-21
Alignments of top-scoring domains:
PF01825.11.fs: domain 1 of 1, from 342 to 389: score 68.1, E = 1.7e-19
*->snptCvfWdese.ggq.GgWstdGCqlgvssndthttClCnHLTsFA
+++CvfW e+ + +++G+Ws+ GC++ v + +t+t C CnHLT+FA
pF1KB9522 342 VTLQCVFWVEDPtLSSpGHWSSAGCET-V-RRETQTSCFCNHLTYFA 386
vLm<-*
vLm
pF1KB9522 387 VLM 389
PF01825.11.ls: domain 1 of 1, from 342 to 389: score 70.1, E = 6.7e-18
*->snptCvfWdese.ggq.GgWstdGCqlgvssndthttClCnHLTsFA
+++CvfW e+ + +++G+Ws+ GC++ v + +t+t C CnHLT+FA
pF1KB9522 342 VTLQCVFWVEDPtLSSpGHWSSAGCET-V-RRETQTSCFCNHLTYFA 386
vLm<-*
vLm
pF1KB9522 387 VLM 389
PF00002.15.fs: domain 1 of 1, from 400 to 652: score 81.8, E = 1.7e-23
*->lllLkviytVGyslS.LvaLllAiaifllFRkLhCtRNyIHlNLfaS
+ L+++ +VG+ +S L++L++ a+++ Rk + H+NL ++
pF1KB9522 400 KHYLSLLSYVGCVVSaLACLVTIAAYLCSRRKPRDYTIKVHMNLLLA 446
fiLraisflik..davlfnsvglseadqlsweeslhcsasagkitmivvV
+L +sfl+ ++ a++ ++ g
pF1KB9522 447 VFLLDTSFLLSepVALTGSEAG---------------------------- 468
gCkvvavflhYfflaNFfWmLvEGlYLhtLlvvtVevffse.rkylwwYl
C+++a+flh+ +l++ W +EG+ L++L+ Vevf ++ ++yl++
pF1KB9522 469 -CRASAIFLHFSLLTCLSWTGLEGYNLYRLV---VEVFGTYvPGYLLKLS 514
liGWGvPavfVgiWaivrpdkagygn.............egCCWlsnedn
+ GWG+P V++ a+v+ d++g ++++++ + +C W++ +
pF1KB9522 515 AMGWGFPIFLVTLVALVDVDNYGPIIlavhrtpegviypSMC-WIRD--S 561
gyfwWiikGPvllvilvNfilFinilriLvqKlridslspdmgetdqyrk
+ G + lv+l N+ ++ +vq lr l p++ k
pF1KB9522 562 LVSYITNLGLFSLVFLFNMAML---ATMVVQILR---LRPHTQ------K 599
krlaKStLlLlPLLGitwvlflfapeddarGvssivflylflilnSfQGF
++ + + L L + LG+ w l++f + + G+ v lylf i SfQGF
pF1KB9522 600 WSHVLTLLGLSLVLGLPWALIFFSFAS---GTFQLVVLYLFSIITSFQGF 646
fVavlY<-*
++++ Y
pF1KB9522 647 LIFIWY 652
PF00002.15.ls: domain 1 of 1, from 400 to 659: score 79.5, E = 9.8e-21
*->lllLkviytVGyslS.LvaLllAiaifllFRkLhCtRNyIHlNLfaS
+ L+++ +VG+ +S L++L++ a+++ Rk + H+NL ++
pF1KB9522 400 KHYLSLLSYVGCVVSaLACLVTIAAYLCSRRKPRDYTIKVHMNLLLA 446
fiLraisflik..davlfnsvglseadqlsweeslhcsasagkitmivvV
+L +sfl+ ++ a++ ++ g
pF1KB9522 447 VFLLDTSFLLSepVALTGSEAG---------------------------- 468
gCkvvavflhYfflaNFfWmLvEGlYLhtLlvvtVevffse.rkylwwYl
C+++a+flh+ +l++ W +EG+ L++L+ Vevf ++ ++yl++
pF1KB9522 469 -CRASAIFLHFSLLTCLSWTGLEGYNLYRLV---VEVFGTYvPGYLLKLS 514
liGWGvPavfVgiWaivrpdkagygn.............egCCWlsnedn
+ GWG+P V++ a+v+ d++g ++++++ + +C W++ +
pF1KB9522 515 AMGWGFPIFLVTLVALVDVDNYGPIIlavhrtpegviypSMC-WIRD--S 561
gyfwWiikGPvllvilvNfilFinilriLvqKlridslspdmgetdqyrk
+ G + lv+l N+ ++ +vq lr l p++ k
pF1KB9522 562 LVSYITNLGLFSLVFLFNMAML---ATMVVQILR---LRPHTQ------K 599
krlaKStLlLlPLLGitwvlflfapeddarGvssivflylflilnSfQGF
++ + + L L + LG+ w l++f + + G+ v lylf i SfQGF
pF1KB9522 600 WSHVLTLLGLSLVLGLPWALIFFSFAS---GTFQLVVLYLFSIITSFQGF 646
fVavlYCFLNgEV<-*
++++ Y ++
pF1KB9522 647 LIFIWYWSMRLQA 659
//