Result of FASTA (omim) for pF1KB9498
FASTA searches a protein or DNA sequence data bank 36.3.4 Apr, 2011
Please cite:
W.R. Pearson & D.J. Lipman PNAS (1988) 85:2444-2448

Query: pF1KB9498, 611 aa
  1>>>pF1KB9498 611 - 611 aa - 611 aa
Library: /omim/omim.rfq.tfa
  60827320 residues in 85289 sequences

Statistics:  Expectation_n fit: rho(ln(x))= 12.1212+/-0.00043; mu= -11.1496+/- 0.027
 mean_var=416.3902+/-84.776, 0's: 0 Z-trim(122.8): 47  B-trim: 0 in 0/58
 Lambda= 0.062853
 statistics sampled from 41512 (41569) to 41512 sequences
Algorithm: FASTA (3.7 Nov 2010) [optimized]
Parameters: BL50 matrix (15:-5), open/ext: -10/-2
 ktup: 2, E-join: 1 (0.779), E-opt: 0.2 (0.487), width:  16
 Scan time: 13.640

The best scores are:                                      opt bits E(85289)
NP_001408 (OMIM: 603928) eukaryotic translation in ( 611) 4199 395.1 3.7e-109
NP_001287750 (OMIM: 603928) eukaryotic translation ( 616) 4174 392.8 1.8e-108
NP_001317583 (OMIM: 603928) eukaryotic translation ( 572) 3170 301.8 4.3e-81
NP_071496 (OMIM: 603431) eukaryotic translation in ( 248)  321 43.1  0.0013
XP_011514858 (OMIM: 603431) PREDICTED: eukaryotic  ( 250)  321 43.1  0.0013


>>NP_001408 (OMIM: 603928) eukaryotic translation initia  (611 aa)
 initn: 4199 init1: 4199 opt: 4199  Z-score: 2080.7  bits: 395.1 E(85289): 3.7e-109
Smith-Waterman score: 4199; 100.0% identity (100.0% similar) in 611 aa overlap (1-611:1-611)

               10        20        30        40        50        60
pF1KB9 MAASAKKKNKKGKTISLTDFLAEDGGTGGGSTYVSKPVSWADETDDLEGDVSTTWHSNDD
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 MAASAKKKNKKGKTISLTDFLAEDGGTGGGSTYVSKPVSWADETDDLEGDVSTTWHSNDD
               10        20        30        40        50        60

               70        80        90       100       110       120
pF1KB9 DVYRAPPIDRSILPTAPRAAREPNIDRSRLPKSPPYTAFLGNLPYDVTEESIKEFFRGLN
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 DVYRAPPIDRSILPTAPRAAREPNIDRSRLPKSPPYTAFLGNLPYDVTEESIKEFFRGLN
               70        80        90       100       110       120

              130       140       150       160       170       180
pF1KB9 ISAVRLPREPSNPERLKGFGYAEFEDLDSLLSALSLNEESLGNRRIRVDVADQAQDKDRD
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 ISAVRLPREPSNPERLKGFGYAEFEDLDSLLSALSLNEESLGNRRIRVDVADQAQDKDRD
              130       140       150       160       170       180

              190       200       210       220       230       240
pF1KB9 DRSFGRDRNRDSDKTDTDWRARPATDSFDDYPPRRGDDSFGDKYRDRYDSDRYRDGYRDG
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 DRSFGRDRNRDSDKTDTDWRARPATDSFDDYPPRRGDDSFGDKYRDRYDSDRYRDGYRDG
              190       200       210       220       230       240

              250       260       270       280       290       300
pF1KB9 YRDGPRRDMDRYGGRDRYDDRGSRDYDRGYDSRIGSGRRAFGSGYRRDDDYRGGGDRYED
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 YRDGPRRDMDRYGGRDRYDDRGSRDYDRGYDSRIGSGRRAFGSGYRRDDDYRGGGDRYED
              250       260       270       280       290       300

              310       320       330       340       350       360
pF1KB9 RYDRRDDRSWSSRDDYSRDDYRRDDRGPPQRPKLNLKPRSTPKEDDSSASTSQSTRAASI
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 RYDRRDDRSWSSRDDYSRDDYRRDDRGPPQRPKLNLKPRSTPKEDDSSASTSQSTRAASI
              310       320       330       340       350       360

              370       380       390       400       410       420
pF1KB9 FGGAKPVDTAAREREVEERLQKEQEKLQRQLDEPKLERRPRERHPSWRSEETQERERSRT
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 FGGAKPVDTAAREREVEERLQKEQEKLQRQLDEPKLERRPRERHPSWRSEETQERERSRT
              370       380       390       400       410       420

              430       440       450       460       470       480
pF1KB9 GSESSQTGTSTTSSRNARRRESEKSLENETLNKEEDCHSPTSKPPKPDQPLKVMPAPPPK
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 GSESSQTGTSTTSSRNARRRESEKSLENETLNKEEDCHSPTSKPPKPDQPLKVMPAPPPK
              430       440       450       460       470       480

              490       500       510       520       530       540
pF1KB9 ENAWVKRSSNPPARSQSSDTEQQSPTSGGGKVAPAQPSEEGPGRKDENKVDGMNAPKGQT
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 ENAWVKRSSNPPARSQSSDTEQQSPTSGGGKVAPAQPSEEGPGRKDENKVDGMNAPKGQT
              490       500       510       520       530       540

              550       560       570       580       590       600
pF1KB9 GNSSRGPGDGGNRDHWKESDRKDGKKDQDSRSAPEPKKPEENPASKFSSASKYAALSVDG
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 GNSSRGPGDGGNRDHWKESDRKDGKKDQDSRSAPEPKKPEENPASKFSSASKYAALSVDG
              550       560       570       580       590       600

              610 
pF1KB9 EDENEGEDYAE
       :::::::::::
NP_001 EDENEGEDYAE
              610 

>>NP_001287750 (OMIM: 603928) eukaryotic translation ini  (616 aa)
 initn: 3000 init1: 3000 opt: 4174  Z-score: 2068.4  bits: 392.8 E(85289): 1.8e-108
Smith-Waterman score: 4174; 99.0% identity (99.2% similar) in 616 aa overlap (1-611:1-616)

               10        20        30        40        50        60
pF1KB9 MAASAKKKNKKGKTISLTDFLAEDGGTGGGSTYVSKPVSWADETDDLEGDVSTTWHSNDD
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 MAASAKKKNKKGKTISLTDFLAEDGGTGGGSTYVSKPVSWADETDDLEGDVSTTWHSNDD
               10        20        30        40        50        60

               70        80        90       100       110       120
pF1KB9 DVYRAPPIDRSILPTAPRAAREPNIDRSRLPKSPPYTAFLGNLPYDVTEESIKEFFRGLN
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 DVYRAPPIDRSILPTAPRAAREPNIDRSRLPKSPPYTAFLGNLPYDVTEESIKEFFRGLN
               70        80        90       100       110       120

              130       140       150       160       170       180
pF1KB9 ISAVRLPREPSNPERLKGFGYAEFEDLDSLLSALSLNEESLGNRRIRVDVADQAQDKDRD
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 ISAVRLPREPSNPERLKGFGYAEFEDLDSLLSALSLNEESLGNRRIRVDVADQAQDKDRD
              130       140       150       160       170       180

              190       200       210       220       230       240
pF1KB9 DRSFGRDRNRDSDKTDTDWRARPATDSFDDYPPRRGDDSFGDKYRDRYDSDRYRDGYRDG
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 DRSFGRDRNRDSDKTDTDWRARPATDSFDDYPPRRGDDSFGDKYRDRYDSDRYRDGYRDG
              190       200       210       220       230       240

              250       260       270       280       290       300
pF1KB9 YRDGPRRDMDRYGGRDRYDDRGSRDYDRGYDSRIGSGRRAFGSGYRRDDDYRGGGDRYED
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 YRDGPRRDMDRYGGRDRYDDRGSRDYDRGYDSRIGSGRRAFGSGYRRDDDYRGGGDRYED
              250       260       270       280       290       300

              310       320       330       340       350       360
pF1KB9 RYDRRDDRSWSSRDDYSRDDYRRDDRGPPQRPKLNLKPRSTPKEDDSSASTSQSTRAASI
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 RYDRRDDRSWSSRDDYSRDDYRRDDRGPPQRPKLNLKPRSTPKEDDSSASTSQSTRAASI
              310       320       330       340       350       360

              370       380       390       400       410       420
pF1KB9 FGGAKPVDTAAREREVEERLQKEQEKLQRQLDEPKLERRPRERHPSWRSEETQERERSRT
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 FGGAKPVDTAAREREVEERLQKEQEKLQRQLDEPKLERRPRERHPSWRSEETQERERSRT
              370       380       390       400       410       420

              430            440       450       460       470     
pF1KB9 GSESSQTGTSTTSSR-----NARRRESEKSLENETLNKEEDCHSPTSKPPKPDQPLKVMP
       :::::::::::::::     .:::::::::::::::::::::::::::::::::::::::
NP_001 GSESSQTGTSTTSSRSKSDQDARRRESEKSLENETLNKEEDCHSPTSKPPKPDQPLKVMP
              430       440       450       460       470       480

         480       490       500       510       520       530     
pF1KB9 APPPKENAWVKRSSNPPARSQSSDTEQQSPTSGGGKVAPAQPSEEGPGRKDENKVDGMNA
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 APPPKENAWVKRSSNPPARSQSSDTEQQSPTSGGGKVAPAQPSEEGPGRKDENKVDGMNA
              490       500       510       520       530       540

         540       550       560       570       580       590     
pF1KB9 PKGQTGNSSRGPGDGGNRDHWKESDRKDGKKDQDSRSAPEPKKPEENPASKFSSASKYAA
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 PKGQTGNSSRGPGDGGNRDHWKESDRKDGKKDQDSRSAPEPKKPEENPASKFSSASKYAA
              550       560       570       580       590       600

         600       610 
pF1KB9 LSVDGEDENEGEDYAE
       ::::::::::::::::
NP_001 LSVDGEDENEGEDYAE
              610      

>>NP_001317583 (OMIM: 603928) eukaryotic translation ini  (572 aa)
 initn: 3937 init1: 3147 opt: 3170  Z-score: 1576.8  bits: 301.8 E(85289): 4.3e-81
Smith-Waterman score: 3863; 93.6% identity (93.6% similar) in 611 aa overlap (1-611:1-572)

               10        20        30        40        50        60
pF1KB9 MAASAKKKNKKGKTISLTDFLAEDGGTGGGSTYVSKPVSWADETDDLEGDVSTTWHSNDD
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 MAASAKKKNKKGKTISLTDFLAEDGGTGGGSTYVSKPVSWADETDDLEGDVSTTWHSNDD
               10        20        30        40        50        60

               70        80        90       100       110       120
pF1KB9 DVYRAPPIDRSILPTAPRAAREPNIDRSRLPKSPPYTAFLGNLPYDVTEESIKEFFRGLN
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 DVYRAPPIDRSILPTAPRAAREPNIDRSRLPKSPPYTAFLGNLPYDVTEESIKEFFRGLN
               70        80        90       100       110       120

              130       140       150       160       170       180
pF1KB9 ISAVRLPREPSNPERLKGFGYAEFEDLDSLLSALSLNEESLGNRRIRVDVADQAQDKDRD
                                              :::::::::::::::::::::
NP_001 ---------------------------------------SLGNRRIRVDVADQAQDKDRD
                                                     130       140 

              190       200       210       220       230       240
pF1KB9 DRSFGRDRNRDSDKTDTDWRARPATDSFDDYPPRRGDDSFGDKYRDRYDSDRYRDGYRDG
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 DRSFGRDRNRDSDKTDTDWRARPATDSFDDYPPRRGDDSFGDKYRDRYDSDRYRDGYRDG
             150       160       170       180       190       200 

              250       260       270       280       290       300
pF1KB9 YRDGPRRDMDRYGGRDRYDDRGSRDYDRGYDSRIGSGRRAFGSGYRRDDDYRGGGDRYED
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 YRDGPRRDMDRYGGRDRYDDRGSRDYDRGYDSRIGSGRRAFGSGYRRDDDYRGGGDRYED
             210       220       230       240       250       260 

              310       320       330       340       350       360
pF1KB9 RYDRRDDRSWSSRDDYSRDDYRRDDRGPPQRPKLNLKPRSTPKEDDSSASTSQSTRAASI
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 RYDRRDDRSWSSRDDYSRDDYRRDDRGPPQRPKLNLKPRSTPKEDDSSASTSQSTRAASI
             270       280       290       300       310       320 

              370       380       390       400       410       420
pF1KB9 FGGAKPVDTAAREREVEERLQKEQEKLQRQLDEPKLERRPRERHPSWRSEETQERERSRT
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 FGGAKPVDTAAREREVEERLQKEQEKLQRQLDEPKLERRPRERHPSWRSEETQERERSRT
             330       340       350       360       370       380 

              430       440       450       460       470       480
pF1KB9 GSESSQTGTSTTSSRNARRRESEKSLENETLNKEEDCHSPTSKPPKPDQPLKVMPAPPPK
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 GSESSQTGTSTTSSRNARRRESEKSLENETLNKEEDCHSPTSKPPKPDQPLKVMPAPPPK
             390       400       410       420       430       440 

              490       500       510       520       530       540
pF1KB9 ENAWVKRSSNPPARSQSSDTEQQSPTSGGGKVAPAQPSEEGPGRKDENKVDGMNAPKGQT
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 ENAWVKRSSNPPARSQSSDTEQQSPTSGGGKVAPAQPSEEGPGRKDENKVDGMNAPKGQT
             450       460       470       480       490       500 

              550       560       570       580       590       600
pF1KB9 GNSSRGPGDGGNRDHWKESDRKDGKKDQDSRSAPEPKKPEENPASKFSSASKYAALSVDG
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 GNSSRGPGDGGNRDHWKESDRKDGKKDQDSRSAPEPKKPEENPASKFSSASKYAALSVDG
             510       520       530       540       550       560 

              610 
pF1KB9 EDENEGEDYAE
       :::::::::::
NP_001 EDENEGEDYAE
             570  

>>NP_071496 (OMIM: 603431) eukaryotic translation initia  (248 aa)
 initn: 370 init1: 139 opt: 321  Z-score: 185.6  bits: 43.1 E(85289): 0.0013
Smith-Waterman score: 329; 31.4% identity (51.8% similar) in 299 aa overlap (87-385:33-248)

         60        70        80        90       100       110      
pF1KB9 SNDDDVYRAPPIDRSILPTAPRAAREPNIDRSRLPKSPPYTAFLGNLPYDVTEESIKEFF
                                     ...::  :::::..::::..... .:  .:
NP_071 DFDTYDDRAYSSFGGGRGSRGSAGGHGSRSQKELPTEPPYTAYVGNLPFNTVQGDIDAIF
             10        20        30        40        50        60  

        120       130       140       150       160       170      
pF1KB9 RGLNISAVRLPREPSNPERLKGFGYAEFEDLDSLLSALSLNEESLGNRRIRVDVADQAQD
       . :.: .::: :. .. ...::: :.::...:::  ::. .   ::.: .:::.:.    
NP_071 KDLSIRSVRLVRD-KDTDKFKGFCYVEFDEVDSLKEALTYDGALLGDRSLRVDIAE----
             70         80        90       100       110           

        180       190       200       210       220       230      
pF1KB9 KDRDDRSFGRDRNRDSDKTDTDWRARPATDSFDDYPPRRGDDSFGDKYRDRYDSDRYRDG
                   .: .::    .:           :  ::  : . . :  .::   :: 
NP_071 ------------GRKQDKGGFGFRK--------GGPDDRGMGS-SRESRGGWDS---RDD
                   120       130               140        150      

        240       250       260       270       280       290      
pF1KB9 YRDGYRDGPRRDMDRYGGRDRYDDRGSRDYDRGYDSRIGSGRRAFGSGYRRDDDYRGGGD
       . .:.::      :  :::      :::  ::    : :     .:: .:     ::.. 
NP_071 FNSGFRD------DFLGGRG-----GSRPGDR----RTGP---PMGSRFRDGPPLRGSNM
           160                  170              180       190     

        300       310       320       330       340       350      
pF1KB9 RYEDRYDRRDDRSWSSRDDYSRDDYRRDDRGPPQRPKLNLKPRSTPKEDDSSASTSQSTR
        .  :   ...:.                    :::.:.::::..    .. :. .    
NP_071 DF--REPTEEERA--------------------QRPRLQLKPRTVATPLNQVANPN----
           200                           210       220             

        360       370       380       390       400       410      
pF1KB9 AASIFGGAKPVDTAAREREVEERLQKEQEKLQRQLDEPKLERRPRERHPSWRSEETQERE
        ..:::::.:       ::  : .:::::                               
NP_071 -SAIFGGARP-------RE--EVVQKEQE                               
      230              240                                         

>>XP_011514858 (OMIM: 603431) PREDICTED: eukaryotic tran  (250 aa)
 initn: 407 init1: 139 opt: 321  Z-score: 185.6  bits: 43.1 E(85289): 0.0013
Smith-Waterman score: 329; 31.4% identity (51.8% similar) in 299 aa overlap (87-385:35-250)

         60        70        80        90       100       110      
pF1KB9 SNDDDVYRAPPIDRSILPTAPRAAREPNIDRSRLPKSPPYTAFLGNLPYDVTEESIKEFF
                                     ...::  :::::..::::..... .:  .:
XP_011 SMAQPCCPLVISLNGMKRSRGSAGGHGSRSQKELPTEPPYTAYVGNLPFNTVQGDIDAIF
           10        20        30        40        50        60    

        120       130       140       150       160       170      
pF1KB9 RGLNISAVRLPREPSNPERLKGFGYAEFEDLDSLLSALSLNEESLGNRRIRVDVADQAQD
       . :.: .::: :. .. ...::: :.::...:::  ::. .   ::.: .:::.:.    
XP_011 KDLSIRSVRLVRD-KDTDKFKGFCYVEFDEVDSLKEALTYDGALLGDRSLRVDIAE----
           70         80        90       100       110             

        180       190       200       210       220       230      
pF1KB9 KDRDDRSFGRDRNRDSDKTDTDWRARPATDSFDDYPPRRGDDSFGDKYRDRYDSDRYRDG
                   .: .::    .:           :  ::  : . . :  .::   :: 
XP_011 ------------GRKQDKGGFGFRK--------GGPDDRGMGS-SRESRGGWDS---RDD
                 120       130               140        150        

        240       250       260       270       280       290      
pF1KB9 YRDGYRDGPRRDMDRYGGRDRYDDRGSRDYDRGYDSRIGSGRRAFGSGYRRDDDYRGGGD
       . .:.::      :  :::      :::  ::    : :     .:: .:     ::.. 
XP_011 FNSGFRD------DFLGGRG-----GSRPGDR----RTGP---PMGSRFRDGPPLRGSNM
         160                  170           180          190       

        300       310       320       330       340       350      
pF1KB9 RYEDRYDRRDDRSWSSRDDYSRDDYRRDDRGPPQRPKLNLKPRSTPKEDDSSASTSQSTR
        .  :   ...:.                    :::.:.::::..    .. :. .    
XP_011 DF--REPTEEERA--------------------QRPRLQLKPRTVATPLNQVANPN----
         200                           210       220       230     

        360       370       380       390       400       410      
pF1KB9 AASIFGGAKPVDTAAREREVEERLQKEQEKLQRQLDEPKLERRPRERHPSWRSEETQERE
        ..:::::.:       ::  : .:::::                               
XP_011 -SAIFGGARP-------RE--EVVQKEQE                               
              240                250                               




611 residues in 1 query   sequences
60827320 residues in 85289 library sequences
 Tcomplib [36.3.4 Apr, 2011] (8 proc)
 start: Thu Nov  3 23:59:52 2016 done: Thu Nov  3 23:59:54 2016
 Total Scan time: 13.640 Total Display time:  0.030

Function used was FASTA [36.3.4 Apr, 2011]
Inquiries or Suggestions ?
Send a message to flexiclone AT kazusagt.com