Result of FASTA (ccds) for pF1KB9431
FASTA searches a protein or DNA sequence data bank 36.3.4 Apr, 2011
Please cite:
W.R. Pearson & D.J. Lipman PNAS (1988) 85:2444-2448

Query: pF1KB9431, 524 aa
  1>>>pF1KB9431 524 - 524 aa - 524 aa
Library: human.CCDS.faa
  18511270 residues in 32554 sequences

Statistics:  Expectation_n fit: rho(ln(x))= 10.1463+/-0.000929; mu= -1.1303+/- 0.056
 mean_var=339.8385+/-67.238, 0's: 0 Z-trim(116.3): 19  B-trim: 0 in 0/55
 Lambda= 0.069573
 statistics sampled from 16902 (16917) to 16902 sequences
Algorithm: FASTA (3.7 Nov 2010) [optimized]
Parameters: BL50 matrix (15:-5), open/ext: -10/-2
 ktup: 2, E-join: 1 (0.808), E-opt: 0.2 (0.52), width:  16
 Scan time:  4.140

The best scores are:                                      opt bits E(32554)
CCDS45977.1 PRKCSH gene_id:5589|Hs108|chr19        ( 525) 3580 372.9 4.9e-103
CCDS32911.1 PRKCSH gene_id:5589|Hs108|chr19        ( 528) 3519 366.8 3.5e-101
CCDS74286.1 PRKCSH gene_id:5589|Hs108|chr19        ( 535) 2361 250.6 3.4e-66


>>CCDS45977.1 PRKCSH gene_id:5589|Hs108|chr19             (525 aa)
 initn: 2548 init1: 2238 opt: 3580  Z-score: 1963.2  bits: 372.9 E(32554): 4.9e-103
Smith-Waterman score: 3580; 99.8% identity (99.8% similar) in 525 aa overlap (1-524:1-525)

               10        20        30        40        50        60
pF1KB9 MLLPLLLLLPMCWAVEVKRPRGVSLTNHHFYDESKPFTCLDGSATIPFDQVNDDYCDCKD
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS45 MLLPLLLLLPMCWAVEVKRPRGVSLTNHHFYDESKPFTCLDGSATIPFDQVNDDYCDCKD
               10        20        30        40        50        60

               70        80        90       100       110       120
pF1KB9 GSDEPGTAACPNGSFHCTNTGYKPLYIPSNRVNDGVCDCCDGTDEYNSGVICENTCKEKG
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS45 GSDEPGTAACPNGSFHCTNTGYKPLYIPSNRVNDGVCDCCDGTDEYNSGVICENTCKEKG
               70        80        90       100       110       120

              130       140       150       160       170       180
pF1KB9 RKERESLQQMAEVTREGFRLKKILIEDWKKAREEKQKKLIELQAGKKSLEDQVEMLRTVK
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS45 RKERESLQQMAEVTREGFRLKKILIEDWKKAREEKQKKLIELQAGKKSLEDQVEMLRTVK
              130       140       150       160       170       180

              190       200       210       220       230       240
pF1KB9 EEAEKPEREAKEQHQKLWEEQLAAAKAQQEQELAADAFKELDDDMDGTVSVTELQTHPEL
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS45 EEAEKPEREAKEQHQKLWEEQLAAAKAQQEQELAADAFKELDDDMDGTVSVTELQTHPEL
              190       200       210       220       230       240

              250       260       270       280       290       300
pF1KB9 DTDGDGALSEAEAQALLSGDTQTDATSFYDRVWAAIRDKYRSEALPTDLPAPSAPDLTEP
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS45 DTDGDGALSEAEAQALLSGDTQTDATSFYDRVWAAIRDKYRSEALPTDLPAPSAPDLTEP
              250       260       270       280       290       300

              310       320        330       340       350         
pF1KB9 KEEQPPVPSSPTEEEEEEEEEEEE-AEEEEEEEDSEVQGEQPKPASPAEEDKMPPYDEQT
       :::::::::::::::::::::::: :::::::::::::::::::::::::::::::::::
CCDS45 KEEQPPVPSSPTEEEEEEEEEEEEEAEEEEEEEDSEVQGEQPKPASPAEEDKMPPYDEQT
              310       320       330       340       350       360

     360       370       380       390       400       410         
pF1KB9 QAFIDAAQEARNKFEEAERSLKDMEESIRNLEQEISFDFGPNGEFAYLYSQCYELTTNEY
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS45 QAFIDAAQEARNKFEEAERSLKDMEESIRNLEQEISFDFGPNGEFAYLYSQCYELTTNEY
              370       380       390       400       410       420

     420       430       440       450       460       470         
pF1KB9 VYRLCPFKLVSQKPKLGGSPTSLGTWGSWIGPDHDKFSAMKYEQGTGCWQGPNRSTTVRL
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS45 VYRLCPFKLVSQKPKLGGSPTSLGTWGSWIGPDHDKFSAMKYEQGTGCWQGPNRSTTVRL
              430       440       450       460       470       480

     480       490       500       510       520    
pF1KB9 LCGKETMVTSTTEPSRCEYLMELMTPAACPEPPPEAPTEDDHDEL
       :::::::::::::::::::::::::::::::::::::::::::::
CCDS45 LCGKETMVTSTTEPSRCEYLMELMTPAACPEPPPEAPTEDDHDEL
              490       500       510       520     

>>CCDS32911.1 PRKCSH gene_id:5589|Hs108|chr19             (528 aa)
 initn: 2530 init1: 2244 opt: 3519  Z-score: 1930.1  bits: 366.8 E(32554): 3.5e-101
Smith-Waterman score: 3519; 98.1% identity (98.3% similar) in 528 aa overlap (1-524:1-528)

               10        20        30        40        50        60
pF1KB9 MLLPLLLLLPMCWAVEVKRPRGVSLTNHHFYDESKPFTCLDGSATIPFDQVNDDYCDCKD
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS32 MLLPLLLLLPMCWAVEVKRPRGVSLTNHHFYDESKPFTCLDGSATIPFDQVNDDYCDCKD
               10        20        30        40        50        60

               70        80        90       100       110       120
pF1KB9 GSDEPGTAACPNGSFHCTNTGYKPLYIPSNRVNDGVCDCCDGTDEYNSGVICENTCKEKG
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS32 GSDEPGTAACPNGSFHCTNTGYKPLYIPSNRVNDGVCDCCDGTDEYNSGVICENTCKEKG
               70        80        90       100       110       120

              130       140       150       160       170       180
pF1KB9 RKERESLQQMAEVTREGFRLKKILIEDWKKAREEKQKKLIELQAGKKSLEDQVEMLRTVK
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS32 RKERESLQQMAEVTREGFRLKKILIEDWKKAREEKQKKLIELQAGKKSLEDQVEMLRTVK
              130       140       150       160       170       180

              190       200       210       220       230       240
pF1KB9 EEAEKPEREAKEQHQKLWEEQLAAAKAQQEQELAADAFKELDDDMDGTVSVTELQTHPEL
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS32 EEAEKPEREAKEQHQKLWEEQLAAAKAQQEQELAADAFKELDDDMDGTVSVTELQTHPEL
              190       200       210       220       230       240

              250       260       270       280       290       300
pF1KB9 DTDGDGALSEAEAQALLSGDTQTDATSFYDRVWAAIRDKYRSEALPTDLPAPSAPDLTEP
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS32 DTDGDGALSEAEAQALLSGDTQTDATSFYDRVWAAIRDKYRSEALPTDLPAPSAPDLTEP
              250       260       270       280       290       300

              310       320        330       340          350      
pF1KB9 KEEQPPVPSSPTEEEEEEEEEEEE-AEEEEEEEDSEVQGEQ---PKPASPAEEDKMPPYD
       :::::::::::::::::::::::: :::::::::::        :.::::::::::::::
CCDS32 KEEQPPVPSSPTEEEEEEEEEEEEEAEEEEEEEDSEEAPPPLSPPQPASPAEEDKMPPYD
              310       320       330       340       350       360

        360       370       380       390       400       410      
pF1KB9 EQTQAFIDAAQEARNKFEEAERSLKDMEESIRNLEQEISFDFGPNGEFAYLYSQCYELTT
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS32 EQTQAFIDAAQEARNKFEEAERSLKDMEESIRNLEQEISFDFGPNGEFAYLYSQCYELTT
              370       380       390       400       410       420

        420       430       440       450       460       470      
pF1KB9 NEYVYRLCPFKLVSQKPKLGGSPTSLGTWGSWIGPDHDKFSAMKYEQGTGCWQGPNRSTT
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS32 NEYVYRLCPFKLVSQKPKLGGSPTSLGTWGSWIGPDHDKFSAMKYEQGTGCWQGPNRSTT
              430       440       450       460       470       480

        480       490       500       510       520    
pF1KB9 VRLLCGKETMVTSTTEPSRCEYLMELMTPAACPEPPPEAPTEDDHDEL
       ::::::::::::::::::::::::::::::::::::::::::::::::
CCDS32 VRLLCGKETMVTSTTEPSRCEYLMELMTPAACPEPPPEAPTEDDHDEL
              490       500       510       520        

>>CCDS74286.1 PRKCSH gene_id:5589|Hs108|chr19             (535 aa)
 initn: 2834 init1: 2238 opt: 2361  Z-score: 1301.9  bits: 250.6 E(32554): 3.4e-66
Smith-Waterman score: 3550; 97.9% identity (97.9% similar) in 535 aa overlap (1-524:1-535)

               10        20        30        40        50        60
pF1KB9 MLLPLLLLLPMCWAVEVKRPRGVSLTNHHFYDESKPFTCLDGSATIPFDQVNDDYCDCKD
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS74 MLLPLLLLLPMCWAVEVKRPRGVSLTNHHFYDESKPFTCLDGSATIPFDQVNDDYCDCKD
               10        20        30        40        50        60

               70        80        90       100       110       120
pF1KB9 GSDEPGTAACPNGSFHCTNTGYKPLYIPSNRVNDGVCDCCDGTDEYNSGVICENTCKEKG
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS74 GSDEPGTAACPNGSFHCTNTGYKPLYIPSNRVNDGVCDCCDGTDEYNSGVICENTCKEKG
               70        80        90       100       110       120

              130       140       150       160       170       180
pF1KB9 RKERESLQQMAEVTREGFRLKKILIEDWKKAREEKQKKLIELQAGKKSLEDQVEMLRTVK
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS74 RKERESLQQMAEVTREGFRLKKILIEDWKKAREEKQKKLIELQAGKKSLEDQVEMLRTVK
              130       140       150       160       170       180

              190       200       210       220       230       240
pF1KB9 EEAEKPEREAKEQHQKLWEEQLAAAKAQQEQELAADAFKELDDDMDGTVSVTELQTHPEL
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS74 EEAEKPEREAKEQHQKLWEEQLAAAKAQQEQELAADAFKELDDDMDGTVSVTELQTHPEL
              190       200       210       220       230       240

              250       260       270       280       290       300
pF1KB9 DTDGDGALSEAEAQALLSGDTQTDATSFYDRVWAAIRDKYRSEALPTDLPAPSAPDLTEP
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS74 DTDGDGALSEAEAQALLSGDTQTDATSFYDRVWAAIRDKYRSEALPTDLPAPSAPDLTEP
              250       260       270       280       290       300

              310       320        330       340                   
pF1KB9 KEEQPPVPSSPTEEEEEEEEEEEE-AEEEEEEEDSEVQGEQPK----------PASPAEE
       :::::::::::::::::::::::: ::::::::::::::::::          :::::::
CCDS74 KEEQPPVPSSPTEEEEEEEEEEEEEAEEEEEEEDSEVQGEQPKEAPPPLSPPQPASPAEE
              310       320       330       340       350       360

     350       360       370       380       390       400         
pF1KB9 DKMPPYDEQTQAFIDAAQEARNKFEEAERSLKDMEESIRNLEQEISFDFGPNGEFAYLYS
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS74 DKMPPYDEQTQAFIDAAQEARNKFEEAERSLKDMEESIRNLEQEISFDFGPNGEFAYLYS
              370       380       390       400       410       420

     410       420       430       440       450       460         
pF1KB9 QCYELTTNEYVYRLCPFKLVSQKPKLGGSPTSLGTWGSWIGPDHDKFSAMKYEQGTGCWQ
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS74 QCYELTTNEYVYRLCPFKLVSQKPKLGGSPTSLGTWGSWIGPDHDKFSAMKYEQGTGCWQ
              430       440       450       460       470       480

     470       480       490       500       510       520    
pF1KB9 GPNRSTTVRLLCGKETMVTSTTEPSRCEYLMELMTPAACPEPPPEAPTEDDHDEL
       :::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS74 GPNRSTTVRLLCGKETMVTSTTEPSRCEYLMELMTPAACPEPPPEAPTEDDHDEL
              490       500       510       520       530     




524 residues in 1 query   sequences
18511270 residues in 32554 library sequences
 Tcomplib [36.3.4 Apr, 2011] (8 proc)
 start: Thu Nov  3 23:21:25 2016 done: Thu Nov  3 23:21:26 2016
 Total Scan time:  4.140 Total Display time:  0.020

Function used was FASTA [36.3.4 Apr, 2011]
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