Result of FASTA (omim) for pF1KB7008
FASTA searches a protein or DNA sequence data bank 36.3.4 Apr, 2011
Please cite:
W.R. Pearson & D.J. Lipman PNAS (1988) 85:2444-2448

Query: pF1KB7008, 465 aa
  1>>>pF1KB7008 465 - 465 aa - 465 aa
Library: /omim/omim.rfq.tfa
  60827320 residues in 85289 sequences

Statistics:  Expectation_n fit: rho(ln(x))= 10.3983+/-0.000487; mu= -0.8677+/- 0.031
 mean_var=502.1883+/-105.986, 0's: 0 Z-trim(122.1): 252  B-trim: 1820 in 1/60
 Lambda= 0.057232
 statistics sampled from 39423 (39712) to 39423 sequences
Algorithm: FASTA (3.7 Nov 2010) [optimized]
Parameters: BL50 matrix (15:-5), open/ext: -10/-2
 ktup: 2, E-join: 1 (0.757), E-opt: 0.2 (0.466), width:  16
 Scan time: 11.010

The best scores are:                                      opt bits E(85289)
NP_009116 (OMIM: 612678) CUGBP Elav-like family me ( 465) 3126 272.6 1.6e-72
NP_001278035 (OMIM: 612678) CUGBP Elav-like family ( 464) 3109 271.2 4.3e-72
NP_001278036 (OMIM: 612678) CUGBP Elav-like family ( 464) 3108 271.1 4.6e-72
NP_001166119 (OMIM: 612678) CUGBP Elav-like family ( 418) 2806 246.1 1.4e-64
XP_011507414 (OMIM: 612678) PREDICTED: CUGBP Elav- ( 389) 2616 230.4   7e-60
XP_016855634 (OMIM: 612678) PREDICTED: CUGBP Elav- ( 389) 2616 230.4   7e-60
XP_006711202 (OMIM: 612678) PREDICTED: CUGBP Elav- ( 389) 2616 230.4   7e-60
XP_016855635 (OMIM: 612678) PREDICTED: CUGBP Elav- ( 388) 2598 228.9   2e-59
XP_011507416 (OMIM: 612678) PREDICTED: CUGBP Elav- ( 388) 2598 228.9   2e-59
XP_006711204 (OMIM: 612678) PREDICTED: CUGBP Elav- ( 388) 2598 228.9   2e-59
XP_016881341 (OMIM: 612679) PREDICTED: CUGBP Elav- ( 474) 1803 163.3 1.3e-39
XP_011524389 (OMIM: 612679) PREDICTED: CUGBP Elav- ( 494) 1803 163.4 1.3e-39
XP_016881354 (OMIM: 612679) PREDICTED: CUGBP Elav- ( 446) 1798 162.9 1.6e-39
XP_016881335 (OMIM: 612679) PREDICTED: CUGBP Elav- ( 476) 1789 162.2 2.8e-39
XP_016881329 (OMIM: 612679) PREDICTED: CUGBP Elav- ( 496) 1789 162.2 2.9e-39
XP_016881351 (OMIM: 612679) PREDICTED: CUGBP Elav- ( 447) 1786 161.9 3.2e-39
XP_016881339 (OMIM: 612679) PREDICTED: CUGBP Elav- ( 475) 1786 161.9 3.4e-39
XP_016881338 (OMIM: 612679) PREDICTED: CUGBP Elav- ( 473) 1785 161.9 3.6e-39
NP_001020260 (OMIM: 612679) CUGBP Elav-like family ( 448) 1784 161.7 3.6e-39
XP_016881350 (OMIM: 612679) PREDICTED: CUGBP Elav- ( 447) 1781 161.5 4.3e-39
XP_016881340 (OMIM: 612679) PREDICTED: CUGBP Elav- ( 474) 1773 160.9 7.1e-39
XP_016881336 (OMIM: 612679) PREDICTED: CUGBP Elav- ( 475) 1771 160.7 7.9e-39
XP_011524388 (OMIM: 612679) PREDICTED: CUGBP Elav- ( 495) 1771 160.7 8.1e-39
XP_016881353 (OMIM: 612679) PREDICTED: CUGBP Elav- ( 446) 1768 160.4 9.1e-39
XP_016881346 (OMIM: 612679) PREDICTED: CUGBP Elav- ( 454) 1768 160.4 9.2e-39
XP_016881337 (OMIM: 612679) PREDICTED: CUGBP Elav- ( 474) 1768 160.4 9.4e-39
XP_016881349 (OMIM: 612679) PREDICTED: CUGBP Elav- ( 447) 1766 160.2   1e-38
XP_016881352 (OMIM: 612679) PREDICTED: CUGBP Elav- ( 446) 1763 160.0 1.2e-38
XP_011507413 (OMIM: 612678) PREDICTED: CUGBP Elav- ( 414) 1728 157.1 8.6e-38
NP_001166120 (OMIM: 612678) CUGBP Elav-like family ( 415) 1725 156.8   1e-37
NP_443072 (OMIM: 612681) CUGBP Elav-like family me ( 481) 1589 145.7 2.7e-34
XP_006722896 (OMIM: 612680) PREDICTED: CUGBP Elav- ( 484) 1553 142.7 2.1e-33
NP_068757 (OMIM: 612680) CUGBP Elav-like family me ( 485) 1544 142.0 3.5e-33
XP_006722895 (OMIM: 612680) PREDICTED: CUGBP Elav- ( 485) 1544 142.0 3.5e-33
NP_001166155 (OMIM: 612681) CUGBP Elav-like family ( 454) 1499 138.2 4.5e-32
XP_016881357 (OMIM: 612679) PREDICTED: CUGBP Elav- ( 353) 1349 125.7 2.1e-28
XP_016881359 (OMIM: 612679) PREDICTED: CUGBP Elav- ( 352) 1346 125.4 2.4e-28
XP_016881360 (OMIM: 612679) PREDICTED: CUGBP Elav- ( 325) 1344 125.2 2.6e-28
NP_001166144 (OMIM: 612680) CUGBP Elav-like family ( 409) 1344 125.4   3e-28
XP_016881358 (OMIM: 612679) PREDICTED: CUGBP Elav- ( 352) 1331 124.2 5.7e-28
XP_016881361 (OMIM: 612679) PREDICTED: CUGBP Elav- ( 324) 1326 123.7 7.3e-28
XP_016872624 (OMIM: 601074) PREDICTED: CUGBP Elav- ( 482) 1291 121.1 6.8e-27
NP_006551 (OMIM: 601074) CUGBP Elav-like family me ( 482) 1291 121.1 6.8e-27
XP_016872602 (OMIM: 601074) PREDICTED: CUGBP Elav- ( 509) 1291 121.1 7.1e-27
XP_016872600 (OMIM: 601074) PREDICTED: CUGBP Elav- ( 509) 1291 121.1 7.1e-27
XP_016872601 (OMIM: 601074) PREDICTED: CUGBP Elav- ( 509) 1291 121.1 7.1e-27
XP_016872603 (OMIM: 601074) PREDICTED: CUGBP Elav- ( 509) 1291 121.1 7.1e-27
XP_016881333 (OMIM: 612679) PREDICTED: CUGBP Elav- ( 484) 1252 117.9 6.4e-26
XP_011524387 (OMIM: 612679) PREDICTED: CUGBP Elav- ( 504) 1252 117.9 6.5e-26
XP_016881345 (OMIM: 612679) PREDICTED: CUGBP Elav- ( 456) 1247 117.4 8.2e-26


>>NP_009116 (OMIM: 612678) CUGBP Elav-like family member  (465 aa)
 initn: 3126 init1: 3126 opt: 3126  Z-score: 1422.8  bits: 272.6 E(85289): 1.6e-72
Smith-Waterman score: 3126; 100.0% identity (100.0% similar) in 465 aa overlap (1-465:1-465)

               10        20        30        40        50        60
pF1KB7 MKEPDAIKLFVGQIPRHLEEKDLKPIFEQFGRIFELTVIKDKYTGLHKGCAFLTYCARDS
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_009 MKEPDAIKLFVGQIPRHLEEKDLKPIFEQFGRIFELTVIKDKYTGLHKGCAFLTYCARDS
               10        20        30        40        50        60

               70        80        90       100       110       120
pF1KB7 ALKAQSALHEQKTLPGMNRPIQVKPADSESRGEDRKLFVGMLGKQQTDEDVRKMFEPFGT
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_009 ALKAQSALHEQKTLPGMNRPIQVKPADSESRGEDRKLFVGMLGKQQTDEDVRKMFEPFGT
               70        80        90       100       110       120

              130       140       150       160       170       180
pF1KB7 IDECTVLRGPDGTSKGCAFVKFQTHAEAQAAINTLHSSRTLPGASSSLVVKFADTEKERG
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_009 IDECTVLRGPDGTSKGCAFVKFQTHAEAQAAINTLHSSRTLPGASSSLVVKFADTEKERG
              130       140       150       160       170       180

              190       200       210       220       230       240
pF1KB7 LRRMQQVATQLGMFSPIALQFGAYSAYTQALMQQQAALVAAHSAYLSPMATMAAVQMQHM
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_009 LRRMQQVATQLGMFSPIALQFGAYSAYTQALMQQQAALVAAHSAYLSPMATMAAVQMQHM
              190       200       210       220       230       240

              250       260       270       280       290       300
pF1KB7 AAINANGLIATPITPSSGTSTPPAIAATPVSAIPAALGVNGYSPVPTQPTGQPAPDALYP
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_009 AAINANGLIATPITPSSGTSTPPAIAATPVSAIPAALGVNGYSPVPTQPTGQPAPDALYP
              250       260       270       280       290       300

              310       320       330       340       350       360
pF1KB7 NGVHPYPAQSPAAPVDPLQQAYAGMQHYTAAYPAAYSLVAPAFPQPPALVAQQPPPPPQQ
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_009 NGVHPYPAQSPAAPVDPLQQAYAGMQHYTAAYPAAYSLVAPAFPQPPALVAQQPPPPPQQ
              310       320       330       340       350       360

              370       380       390       400       410       420
pF1KB7 QQQQQQQQQQQQQREGPDGCNIFIYHLPQEFTDSEILQMFVPFGHVISAKVFVDRATNQS
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_009 QQQQQQQQQQQQQREGPDGCNIFIYHLPQEFTDSEILQMFVPFGHVISAKVFVDRATNQS
              370       380       390       400       410       420

              430       440       450       460     
pF1KB7 KCFGFVSFDNPASAQAAIQAMNGFQIGMKRLKVQLKRPKDANRPY
       :::::::::::::::::::::::::::::::::::::::::::::
NP_009 KCFGFVSFDNPASAQAAIQAMNGFQIGMKRLKVQLKRPKDANRPY
              430       440       450       460     

>>NP_001278035 (OMIM: 612678) CUGBP Elav-like family mem  (464 aa)
 initn: 2525 init1: 2318 opt: 3109  Z-score: 1415.2  bits: 271.2 E(85289): 4.3e-72
Smith-Waterman score: 3109; 99.8% identity (99.8% similar) in 465 aa overlap (1-465:1-464)

               10        20        30        40        50        60
pF1KB7 MKEPDAIKLFVGQIPRHLEEKDLKPIFEQFGRIFELTVIKDKYTGLHKGCAFLTYCARDS
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 MKEPDAIKLFVGQIPRHLEEKDLKPIFEQFGRIFELTVIKDKYTGLHKGCAFLTYCARDS
               10        20        30        40        50        60

               70        80        90       100       110       120
pF1KB7 ALKAQSALHEQKTLPGMNRPIQVKPADSESRGEDRKLFVGMLGKQQTDEDVRKMFEPFGT
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 ALKAQSALHEQKTLPGMNRPIQVKPADSESRGEDRKLFVGMLGKQQTDEDVRKMFEPFGT
               70        80        90       100       110       120

              130       140       150       160       170       180
pF1KB7 IDECTVLRGPDGTSKGCAFVKFQTHAEAQAAINTLHSSRTLPGASSSLVVKFADTEKERG
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 IDECTVLRGPDGTSKGCAFVKFQTHAEAQAAINTLHSSRTLPGASSSLVVKFADTEKERG
              130       140       150       160       170       180

              190       200       210       220       230       240
pF1KB7 LRRMQQVATQLGMFSPIALQFGAYSAYTQALMQQQAALVAAHSAYLSPMATMAAVQMQHM
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 LRRMQQVATQLGMFSPIALQFGAYSAYTQALMQQQAALVAAHSAYLSPMATMAAVQMQHM
              190       200       210       220       230       240

              250       260       270       280       290       300
pF1KB7 AAINANGLIATPITPSSGTSTPPAIAATPVSAIPAALGVNGYSPVPTQPTGQPAPDALYP
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 AAINANGLIATPITPSSGTSTPPAIAATPVSAIPAALGVNGYSPVPTQPTGQPAPDALYP
              250       260       270       280       290       300

              310       320       330       340       350       360
pF1KB7 NGVHPYPAQSPAAPVDPLQQAYAGMQHYTAAYPAAYSLVAPAFPQPPALVAQQPPPPPQQ
       :::::::::::::::::::::::::::::: :::::::::::::::::::::::::::::
NP_001 NGVHPYPAQSPAAPVDPLQQAYAGMQHYTA-YPAAYSLVAPAFPQPPALVAQQPPPPPQQ
              310       320       330        340       350         

              370       380       390       400       410       420
pF1KB7 QQQQQQQQQQQQQREGPDGCNIFIYHLPQEFTDSEILQMFVPFGHVISAKVFVDRATNQS
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 QQQQQQQQQQQQQREGPDGCNIFIYHLPQEFTDSEILQMFVPFGHVISAKVFVDRATNQS
     360       370       380       390       400       410         

              430       440       450       460     
pF1KB7 KCFGFVSFDNPASAQAAIQAMNGFQIGMKRLKVQLKRPKDANRPY
       :::::::::::::::::::::::::::::::::::::::::::::
NP_001 KCFGFVSFDNPASAQAAIQAMNGFQIGMKRLKVQLKRPKDANRPY
     420       430       440       450       460    

>>NP_001278036 (OMIM: 612678) CUGBP Elav-like family mem  (464 aa)
 initn: 2502 init1: 2502 opt: 3108  Z-score: 1414.8  bits: 271.1 E(85289): 4.6e-72
Smith-Waterman score: 3108; 99.8% identity (99.8% similar) in 465 aa overlap (1-465:1-464)

               10        20        30        40        50        60
pF1KB7 MKEPDAIKLFVGQIPRHLEEKDLKPIFEQFGRIFELTVIKDKYTGLHKGCAFLTYCARDS
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 MKEPDAIKLFVGQIPRHLEEKDLKPIFEQFGRIFELTVIKDKYTGLHKGCAFLTYCARDS
               10        20        30        40        50        60

               70        80        90       100       110       120
pF1KB7 ALKAQSALHEQKTLPGMNRPIQVKPADSESRGEDRKLFVGMLGKQQTDEDVRKMFEPFGT
       :::::::::::::::::::::::::::::::: :::::::::::::::::::::::::::
NP_001 ALKAQSALHEQKTLPGMNRPIQVKPADSESRG-DRKLFVGMLGKQQTDEDVRKMFEPFGT
               70        80        90        100       110         

              130       140       150       160       170       180
pF1KB7 IDECTVLRGPDGTSKGCAFVKFQTHAEAQAAINTLHSSRTLPGASSSLVVKFADTEKERG
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 IDECTVLRGPDGTSKGCAFVKFQTHAEAQAAINTLHSSRTLPGASSSLVVKFADTEKERG
     120       130       140       150       160       170         

              190       200       210       220       230       240
pF1KB7 LRRMQQVATQLGMFSPIALQFGAYSAYTQALMQQQAALVAAHSAYLSPMATMAAVQMQHM
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 LRRMQQVATQLGMFSPIALQFGAYSAYTQALMQQQAALVAAHSAYLSPMATMAAVQMQHM
     180       190       200       210       220       230         

              250       260       270       280       290       300
pF1KB7 AAINANGLIATPITPSSGTSTPPAIAATPVSAIPAALGVNGYSPVPTQPTGQPAPDALYP
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 AAINANGLIATPITPSSGTSTPPAIAATPVSAIPAALGVNGYSPVPTQPTGQPAPDALYP
     240       250       260       270       280       290         

              310       320       330       340       350       360
pF1KB7 NGVHPYPAQSPAAPVDPLQQAYAGMQHYTAAYPAAYSLVAPAFPQPPALVAQQPPPPPQQ
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 NGVHPYPAQSPAAPVDPLQQAYAGMQHYTAAYPAAYSLVAPAFPQPPALVAQQPPPPPQQ
     300       310       320       330       340       350         

              370       380       390       400       410       420
pF1KB7 QQQQQQQQQQQQQREGPDGCNIFIYHLPQEFTDSEILQMFVPFGHVISAKVFVDRATNQS
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 QQQQQQQQQQQQQREGPDGCNIFIYHLPQEFTDSEILQMFVPFGHVISAKVFVDRATNQS
     360       370       380       390       400       410         

              430       440       450       460     
pF1KB7 KCFGFVSFDNPASAQAAIQAMNGFQIGMKRLKVQLKRPKDANRPY
       :::::::::::::::::::::::::::::::::::::::::::::
NP_001 KCFGFVSFDNPASAQAAIQAMNGFQIGMKRLKVQLKRPKDANRPY
     420       430       440       450       460    

>>NP_001166119 (OMIM: 612678) CUGBP Elav-like family mem  (418 aa)
 initn: 2806 init1: 2806 opt: 2806  Z-score: 1280.5  bits: 246.1 E(85289): 1.4e-64
Smith-Waterman score: 2806; 100.0% identity (100.0% similar) in 417 aa overlap (49-465:2-418)

       20        30        40        50        60        70        
pF1KB7 EEKDLKPIFEQFGRIFELTVIKDKYTGLHKGCAFLTYCARDSALKAQSALHEQKTLPGMN
                                     ::::::::::::::::::::::::::::::
NP_001                              MGCAFLTYCARDSALKAQSALHEQKTLPGMN
                                            10        20        30 

       80        90       100       110       120       130        
pF1KB7 RPIQVKPADSESRGEDRKLFVGMLGKQQTDEDVRKMFEPFGTIDECTVLRGPDGTSKGCA
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 RPIQVKPADSESRGEDRKLFVGMLGKQQTDEDVRKMFEPFGTIDECTVLRGPDGTSKGCA
              40        50        60        70        80        90 

      140       150       160       170       180       190        
pF1KB7 FVKFQTHAEAQAAINTLHSSRTLPGASSSLVVKFADTEKERGLRRMQQVATQLGMFSPIA
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 FVKFQTHAEAQAAINTLHSSRTLPGASSSLVVKFADTEKERGLRRMQQVATQLGMFSPIA
             100       110       120       130       140       150 

      200       210       220       230       240       250        
pF1KB7 LQFGAYSAYTQALMQQQAALVAAHSAYLSPMATMAAVQMQHMAAINANGLIATPITPSSG
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 LQFGAYSAYTQALMQQQAALVAAHSAYLSPMATMAAVQMQHMAAINANGLIATPITPSSG
             160       170       180       190       200       210 

      260       270       280       290       300       310        
pF1KB7 TSTPPAIAATPVSAIPAALGVNGYSPVPTQPTGQPAPDALYPNGVHPYPAQSPAAPVDPL
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 TSTPPAIAATPVSAIPAALGVNGYSPVPTQPTGQPAPDALYPNGVHPYPAQSPAAPVDPL
             220       230       240       250       260       270 

      320       330       340       350       360       370        
pF1KB7 QQAYAGMQHYTAAYPAAYSLVAPAFPQPPALVAQQPPPPPQQQQQQQQQQQQQQQREGPD
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 QQAYAGMQHYTAAYPAAYSLVAPAFPQPPALVAQQPPPPPQQQQQQQQQQQQQQQREGPD
             280       290       300       310       320       330 

      380       390       400       410       420       430        
pF1KB7 GCNIFIYHLPQEFTDSEILQMFVPFGHVISAKVFVDRATNQSKCFGFVSFDNPASAQAAI
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 GCNIFIYHLPQEFTDSEILQMFVPFGHVISAKVFVDRATNQSKCFGFVSFDNPASAQAAI
             340       350       360       370       380       390 

      440       450       460     
pF1KB7 QAMNGFQIGMKRLKVQLKRPKDANRPY
       :::::::::::::::::::::::::::
NP_001 QAMNGFQIGMKRLKVQLKRPKDANRPY
             400       410        

>>XP_011507414 (OMIM: 612678) PREDICTED: CUGBP Elav-like  (389 aa)
 initn: 2616 init1: 2616 opt: 2616  Z-score: 1196.0  bits: 230.4 E(85289): 7e-60
Smith-Waterman score: 2616; 100.0% identity (100.0% similar) in 389 aa overlap (77-465:1-389)

         50        60        70        80        90       100      
pF1KB7 HKGCAFLTYCARDSALKAQSALHEQKTLPGMNRPIQVKPADSESRGEDRKLFVGMLGKQQ
                                     ::::::::::::::::::::::::::::::
XP_011                               MNRPIQVKPADSESRGEDRKLFVGMLGKQQ
                                             10        20        30

        110       120       130       140       150       160      
pF1KB7 TDEDVRKMFEPFGTIDECTVLRGPDGTSKGCAFVKFQTHAEAQAAINTLHSSRTLPGASS
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_011 TDEDVRKMFEPFGTIDECTVLRGPDGTSKGCAFVKFQTHAEAQAAINTLHSSRTLPGASS
               40        50        60        70        80        90

        170       180       190       200       210       220      
pF1KB7 SLVVKFADTEKERGLRRMQQVATQLGMFSPIALQFGAYSAYTQALMQQQAALVAAHSAYL
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_011 SLVVKFADTEKERGLRRMQQVATQLGMFSPIALQFGAYSAYTQALMQQQAALVAAHSAYL
              100       110       120       130       140       150

        230       240       250       260       270       280      
pF1KB7 SPMATMAAVQMQHMAAINANGLIATPITPSSGTSTPPAIAATPVSAIPAALGVNGYSPVP
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_011 SPMATMAAVQMQHMAAINANGLIATPITPSSGTSTPPAIAATPVSAIPAALGVNGYSPVP
              160       170       180       190       200       210

        290       300       310       320       330       340      
pF1KB7 TQPTGQPAPDALYPNGVHPYPAQSPAAPVDPLQQAYAGMQHYTAAYPAAYSLVAPAFPQP
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_011 TQPTGQPAPDALYPNGVHPYPAQSPAAPVDPLQQAYAGMQHYTAAYPAAYSLVAPAFPQP
              220       230       240       250       260       270

        350       360       370       380       390       400      
pF1KB7 PALVAQQPPPPPQQQQQQQQQQQQQQQREGPDGCNIFIYHLPQEFTDSEILQMFVPFGHV
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_011 PALVAQQPPPPPQQQQQQQQQQQQQQQREGPDGCNIFIYHLPQEFTDSEILQMFVPFGHV
              280       290       300       310       320       330

        410       420       430       440       450       460     
pF1KB7 ISAKVFVDRATNQSKCFGFVSFDNPASAQAAIQAMNGFQIGMKRLKVQLKRPKDANRPY
       :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_011 ISAKVFVDRATNQSKCFGFVSFDNPASAQAAIQAMNGFQIGMKRLKVQLKRPKDANRPY
              340       350       360       370       380         

>>XP_016855634 (OMIM: 612678) PREDICTED: CUGBP Elav-like  (389 aa)
 initn: 2616 init1: 2616 opt: 2616  Z-score: 1196.0  bits: 230.4 E(85289): 7e-60
Smith-Waterman score: 2616; 100.0% identity (100.0% similar) in 389 aa overlap (77-465:1-389)

         50        60        70        80        90       100      
pF1KB7 HKGCAFLTYCARDSALKAQSALHEQKTLPGMNRPIQVKPADSESRGEDRKLFVGMLGKQQ
                                     ::::::::::::::::::::::::::::::
XP_016                               MNRPIQVKPADSESRGEDRKLFVGMLGKQQ
                                             10        20        30

        110       120       130       140       150       160      
pF1KB7 TDEDVRKMFEPFGTIDECTVLRGPDGTSKGCAFVKFQTHAEAQAAINTLHSSRTLPGASS
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_016 TDEDVRKMFEPFGTIDECTVLRGPDGTSKGCAFVKFQTHAEAQAAINTLHSSRTLPGASS
               40        50        60        70        80        90

        170       180       190       200       210       220      
pF1KB7 SLVVKFADTEKERGLRRMQQVATQLGMFSPIALQFGAYSAYTQALMQQQAALVAAHSAYL
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_016 SLVVKFADTEKERGLRRMQQVATQLGMFSPIALQFGAYSAYTQALMQQQAALVAAHSAYL
              100       110       120       130       140       150

        230       240       250       260       270       280      
pF1KB7 SPMATMAAVQMQHMAAINANGLIATPITPSSGTSTPPAIAATPVSAIPAALGVNGYSPVP
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_016 SPMATMAAVQMQHMAAINANGLIATPITPSSGTSTPPAIAATPVSAIPAALGVNGYSPVP
              160       170       180       190       200       210

        290       300       310       320       330       340      
pF1KB7 TQPTGQPAPDALYPNGVHPYPAQSPAAPVDPLQQAYAGMQHYTAAYPAAYSLVAPAFPQP
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_016 TQPTGQPAPDALYPNGVHPYPAQSPAAPVDPLQQAYAGMQHYTAAYPAAYSLVAPAFPQP
              220       230       240       250       260       270

        350       360       370       380       390       400      
pF1KB7 PALVAQQPPPPPQQQQQQQQQQQQQQQREGPDGCNIFIYHLPQEFTDSEILQMFVPFGHV
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_016 PALVAQQPPPPPQQQQQQQQQQQQQQQREGPDGCNIFIYHLPQEFTDSEILQMFVPFGHV
              280       290       300       310       320       330

        410       420       430       440       450       460     
pF1KB7 ISAKVFVDRATNQSKCFGFVSFDNPASAQAAIQAMNGFQIGMKRLKVQLKRPKDANRPY
       :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_016 ISAKVFVDRATNQSKCFGFVSFDNPASAQAAIQAMNGFQIGMKRLKVQLKRPKDANRPY
              340       350       360       370       380         

>>XP_006711202 (OMIM: 612678) PREDICTED: CUGBP Elav-like  (389 aa)
 initn: 2616 init1: 2616 opt: 2616  Z-score: 1196.0  bits: 230.4 E(85289): 7e-60
Smith-Waterman score: 2616; 100.0% identity (100.0% similar) in 389 aa overlap (77-465:1-389)

         50        60        70        80        90       100      
pF1KB7 HKGCAFLTYCARDSALKAQSALHEQKTLPGMNRPIQVKPADSESRGEDRKLFVGMLGKQQ
                                     ::::::::::::::::::::::::::::::
XP_006                               MNRPIQVKPADSESRGEDRKLFVGMLGKQQ
                                             10        20        30

        110       120       130       140       150       160      
pF1KB7 TDEDVRKMFEPFGTIDECTVLRGPDGTSKGCAFVKFQTHAEAQAAINTLHSSRTLPGASS
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_006 TDEDVRKMFEPFGTIDECTVLRGPDGTSKGCAFVKFQTHAEAQAAINTLHSSRTLPGASS
               40        50        60        70        80        90

        170       180       190       200       210       220      
pF1KB7 SLVVKFADTEKERGLRRMQQVATQLGMFSPIALQFGAYSAYTQALMQQQAALVAAHSAYL
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_006 SLVVKFADTEKERGLRRMQQVATQLGMFSPIALQFGAYSAYTQALMQQQAALVAAHSAYL
              100       110       120       130       140       150

        230       240       250       260       270       280      
pF1KB7 SPMATMAAVQMQHMAAINANGLIATPITPSSGTSTPPAIAATPVSAIPAALGVNGYSPVP
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_006 SPMATMAAVQMQHMAAINANGLIATPITPSSGTSTPPAIAATPVSAIPAALGVNGYSPVP
              160       170       180       190       200       210

        290       300       310       320       330       340      
pF1KB7 TQPTGQPAPDALYPNGVHPYPAQSPAAPVDPLQQAYAGMQHYTAAYPAAYSLVAPAFPQP
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_006 TQPTGQPAPDALYPNGVHPYPAQSPAAPVDPLQQAYAGMQHYTAAYPAAYSLVAPAFPQP
              220       230       240       250       260       270

        350       360       370       380       390       400      
pF1KB7 PALVAQQPPPPPQQQQQQQQQQQQQQQREGPDGCNIFIYHLPQEFTDSEILQMFVPFGHV
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_006 PALVAQQPPPPPQQQQQQQQQQQQQQQREGPDGCNIFIYHLPQEFTDSEILQMFVPFGHV
              280       290       300       310       320       330

        410       420       430       440       450       460     
pF1KB7 ISAKVFVDRATNQSKCFGFVSFDNPASAQAAIQAMNGFQIGMKRLKVQLKRPKDANRPY
       :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_006 ISAKVFVDRATNQSKCFGFVSFDNPASAQAAIQAMNGFQIGMKRLKVQLKRPKDANRPY
              340       350       360       370       380         

>>XP_016855635 (OMIM: 612678) PREDICTED: CUGBP Elav-like  (388 aa)
 initn: 2502 init1: 2502 opt: 2598  Z-score: 1188.0  bits: 228.9 E(85289): 2e-59
Smith-Waterman score: 2598; 99.7% identity (99.7% similar) in 389 aa overlap (77-465:1-388)

         50        60        70        80        90       100      
pF1KB7 HKGCAFLTYCARDSALKAQSALHEQKTLPGMNRPIQVKPADSESRGEDRKLFVGMLGKQQ
                                     :::::::::::::::: :::::::::::::
XP_016                               MNRPIQVKPADSESRG-DRKLFVGMLGKQQ
                                             10         20         

        110       120       130       140       150       160      
pF1KB7 TDEDVRKMFEPFGTIDECTVLRGPDGTSKGCAFVKFQTHAEAQAAINTLHSSRTLPGASS
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_016 TDEDVRKMFEPFGTIDECTVLRGPDGTSKGCAFVKFQTHAEAQAAINTLHSSRTLPGASS
      30        40        50        60        70        80         

        170       180       190       200       210       220      
pF1KB7 SLVVKFADTEKERGLRRMQQVATQLGMFSPIALQFGAYSAYTQALMQQQAALVAAHSAYL
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_016 SLVVKFADTEKERGLRRMQQVATQLGMFSPIALQFGAYSAYTQALMQQQAALVAAHSAYL
      90       100       110       120       130       140         

        230       240       250       260       270       280      
pF1KB7 SPMATMAAVQMQHMAAINANGLIATPITPSSGTSTPPAIAATPVSAIPAALGVNGYSPVP
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_016 SPMATMAAVQMQHMAAINANGLIATPITPSSGTSTPPAIAATPVSAIPAALGVNGYSPVP
     150       160       170       180       190       200         

        290       300       310       320       330       340      
pF1KB7 TQPTGQPAPDALYPNGVHPYPAQSPAAPVDPLQQAYAGMQHYTAAYPAAYSLVAPAFPQP
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_016 TQPTGQPAPDALYPNGVHPYPAQSPAAPVDPLQQAYAGMQHYTAAYPAAYSLVAPAFPQP
     210       220       230       240       250       260         

        350       360       370       380       390       400      
pF1KB7 PALVAQQPPPPPQQQQQQQQQQQQQQQREGPDGCNIFIYHLPQEFTDSEILQMFVPFGHV
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_016 PALVAQQPPPPPQQQQQQQQQQQQQQQREGPDGCNIFIYHLPQEFTDSEILQMFVPFGHV
     270       280       290       300       310       320         

        410       420       430       440       450       460     
pF1KB7 ISAKVFVDRATNQSKCFGFVSFDNPASAQAAIQAMNGFQIGMKRLKVQLKRPKDANRPY
       :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_016 ISAKVFVDRATNQSKCFGFVSFDNPASAQAAIQAMNGFQIGMKRLKVQLKRPKDANRPY
     330       340       350       360       370       380        

>>XP_011507416 (OMIM: 612678) PREDICTED: CUGBP Elav-like  (388 aa)
 initn: 2502 init1: 2502 opt: 2598  Z-score: 1188.0  bits: 228.9 E(85289): 2e-59
Smith-Waterman score: 2598; 99.7% identity (99.7% similar) in 389 aa overlap (77-465:1-388)

         50        60        70        80        90       100      
pF1KB7 HKGCAFLTYCARDSALKAQSALHEQKTLPGMNRPIQVKPADSESRGEDRKLFVGMLGKQQ
                                     :::::::::::::::: :::::::::::::
XP_011                               MNRPIQVKPADSESRG-DRKLFVGMLGKQQ
                                             10         20         

        110       120       130       140       150       160      
pF1KB7 TDEDVRKMFEPFGTIDECTVLRGPDGTSKGCAFVKFQTHAEAQAAINTLHSSRTLPGASS
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_011 TDEDVRKMFEPFGTIDECTVLRGPDGTSKGCAFVKFQTHAEAQAAINTLHSSRTLPGASS
      30        40        50        60        70        80         

        170       180       190       200       210       220      
pF1KB7 SLVVKFADTEKERGLRRMQQVATQLGMFSPIALQFGAYSAYTQALMQQQAALVAAHSAYL
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_011 SLVVKFADTEKERGLRRMQQVATQLGMFSPIALQFGAYSAYTQALMQQQAALVAAHSAYL
      90       100       110       120       130       140         

        230       240       250       260       270       280      
pF1KB7 SPMATMAAVQMQHMAAINANGLIATPITPSSGTSTPPAIAATPVSAIPAALGVNGYSPVP
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_011 SPMATMAAVQMQHMAAINANGLIATPITPSSGTSTPPAIAATPVSAIPAALGVNGYSPVP
     150       160       170       180       190       200         

        290       300       310       320       330       340      
pF1KB7 TQPTGQPAPDALYPNGVHPYPAQSPAAPVDPLQQAYAGMQHYTAAYPAAYSLVAPAFPQP
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_011 TQPTGQPAPDALYPNGVHPYPAQSPAAPVDPLQQAYAGMQHYTAAYPAAYSLVAPAFPQP
     210       220       230       240       250       260         

        350       360       370       380       390       400      
pF1KB7 PALVAQQPPPPPQQQQQQQQQQQQQQQREGPDGCNIFIYHLPQEFTDSEILQMFVPFGHV
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_011 PALVAQQPPPPPQQQQQQQQQQQQQQQREGPDGCNIFIYHLPQEFTDSEILQMFVPFGHV
     270       280       290       300       310       320         

        410       420       430       440       450       460     
pF1KB7 ISAKVFVDRATNQSKCFGFVSFDNPASAQAAIQAMNGFQIGMKRLKVQLKRPKDANRPY
       :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_011 ISAKVFVDRATNQSKCFGFVSFDNPASAQAAIQAMNGFQIGMKRLKVQLKRPKDANRPY
     330       340       350       360       370       380        

>>XP_006711204 (OMIM: 612678) PREDICTED: CUGBP Elav-like  (388 aa)
 initn: 2502 init1: 2502 opt: 2598  Z-score: 1188.0  bits: 228.9 E(85289): 2e-59
Smith-Waterman score: 2598; 99.7% identity (99.7% similar) in 389 aa overlap (77-465:1-388)

         50        60        70        80        90       100      
pF1KB7 HKGCAFLTYCARDSALKAQSALHEQKTLPGMNRPIQVKPADSESRGEDRKLFVGMLGKQQ
                                     :::::::::::::::: :::::::::::::
XP_006                               MNRPIQVKPADSESRG-DRKLFVGMLGKQQ
                                             10         20         

        110       120       130       140       150       160      
pF1KB7 TDEDVRKMFEPFGTIDECTVLRGPDGTSKGCAFVKFQTHAEAQAAINTLHSSRTLPGASS
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_006 TDEDVRKMFEPFGTIDECTVLRGPDGTSKGCAFVKFQTHAEAQAAINTLHSSRTLPGASS
      30        40        50        60        70        80         

        170       180       190       200       210       220      
pF1KB7 SLVVKFADTEKERGLRRMQQVATQLGMFSPIALQFGAYSAYTQALMQQQAALVAAHSAYL
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_006 SLVVKFADTEKERGLRRMQQVATQLGMFSPIALQFGAYSAYTQALMQQQAALVAAHSAYL
      90       100       110       120       130       140         

        230       240       250       260       270       280      
pF1KB7 SPMATMAAVQMQHMAAINANGLIATPITPSSGTSTPPAIAATPVSAIPAALGVNGYSPVP
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_006 SPMATMAAVQMQHMAAINANGLIATPITPSSGTSTPPAIAATPVSAIPAALGVNGYSPVP
     150       160       170       180       190       200         

        290       300       310       320       330       340      
pF1KB7 TQPTGQPAPDALYPNGVHPYPAQSPAAPVDPLQQAYAGMQHYTAAYPAAYSLVAPAFPQP
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_006 TQPTGQPAPDALYPNGVHPYPAQSPAAPVDPLQQAYAGMQHYTAAYPAAYSLVAPAFPQP
     210       220       230       240       250       260         

        350       360       370       380       390       400      
pF1KB7 PALVAQQPPPPPQQQQQQQQQQQQQQQREGPDGCNIFIYHLPQEFTDSEILQMFVPFGHV
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_006 PALVAQQPPPPPQQQQQQQQQQQQQQQREGPDGCNIFIYHLPQEFTDSEILQMFVPFGHV
     270       280       290       300       310       320         

        410       420       430       440       450       460     
pF1KB7 ISAKVFVDRATNQSKCFGFVSFDNPASAQAAIQAMNGFQIGMKRLKVQLKRPKDANRPY
       :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_006 ISAKVFVDRATNQSKCFGFVSFDNPASAQAAIQAMNGFQIGMKRLKVQLKRPKDANRPY
     330       340       350       360       370       380        




465 residues in 1 query   sequences
60827320 residues in 85289 library sequences
 Tcomplib [36.3.4 Apr, 2011] (8 proc)
 start: Thu Nov  3 22:50:03 2016 done: Thu Nov  3 22:50:04 2016
 Total Scan time: 11.010 Total Display time:  0.070

Function used was FASTA [36.3.4 Apr, 2011]
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