GENSCAN 1.0	Date run:  3-Nov-116	Time: 22:45:27

Sequence gi568815589f:88901201_89102334 : 201134 bp : 43.95% C+G : Isochore 2 (43 - 51 C+G%)

Parameter matrix: HumanIso.smat

Predicted genes/exons:

Gn.Ex Type S .Begin ...End .Len Fr Ph I/Ac Do/T CodRg P.... Tscr..
----- ---- - ------ ------ ---- -- -- ---- ---- ----- ----- ------

 1.00 Prom +   1071   1110   40                              -2.66
 1.01 Sngl +   6792   7130  339  2  0   82   37   257 0.990  16.03
 1.02 PlyA +   7677   7682    6                               1.05

 2.00 Prom +   8211   8250   40                              -4.96
 2.01 Sngl +   8677   9738 1062  0  0   66   37   287 0.861  18.56
 2.02 PlyA +   9931   9936    6                               1.05

 3.05 PlyA -  11223  11218    6                               1.05
 3.04 Term -  18408  18200  209  1  2    0   42   155 0.209  -0.40
 3.03 Intr -  22296  22136  161  2  2   53   72    95 0.377   4.03
 3.02 Intr -  24900  24775  126  2  0   77   11   110 0.065   1.99
 3.01 Init -  35711  35557  155  2  2   60   63   144 0.456   8.56
 3.00 Prom -  43238  43199   40                              -3.26

 4.03 PlyA -  43916  43911    6                               1.05
 4.02 Term -  53175  53070  106  2  1   67   54   112 0.227   3.58
 4.01 Init -  70141  69921  221  1  2   95   34   161 0.214   9.60
 4.00 Prom -  80278  80239   40                              -3.66

 5.00 Prom +  84777  84816   40                              -3.86
 5.01 Init +  90462  90495   34  2  1   73   78    49 0.034   2.48
 5.02 Term +  90652  90788  137  2  2   53   42   167 0.187   6.78
 5.03 PlyA +  92134  92139    6                              -0.45

 6.00 Prom +  93334  93373   40                              -5.16
 6.01 Init +  93426  93581  156  2  0   73   92   130 0.497  10.22
 6.02 Term + 100031 101137 1107  1  0   70   43  1826 0.216 168.37
 6.03 PlyA + 102586 102591    6                               1.05

 7.12 PlyA - 104593 104588    6                               1.05
 7.11 Term - 112375 112247  129  1  0  106   43    82 0.529   3.68
 7.10 Intr - 123593 123510   84  2  0   54   86    48 0.004   1.22
 7.09 Intr - 137088 136793  296  1  2   30  101   332 0.817  25.43
 7.08 Intr - 138580 138317  264  2  0  -81   40   520 0.660  27.78
 7.07 Intr - 138785 138586  200  1  2  -37   77   391 0.558  24.49
 7.06 Intr - 139119 138838  282  2  0   39   -4   432 0.106  25.63
 7.05 Intr - 140984 140816  169  0  1   35  -45   202 0.085   0.60
 7.04 Intr - 144633 144534  100  0  1   37  100    55 0.454   1.28
 7.03 Intr - 145794 145644  151  2  1   78  111    47 0.852   6.16
 7.02 Intr - 150963 150837  127  1  1   70  109   121 0.926  12.14
 7.01 Init - 151933 151885   49  1  1   68   54    35 0.107  -2.56
 7.00 Prom - 152848 152809   40                              -8.56

 8.00 Prom + 153208 153247   40                              -1.36
 8.01 Sngl + 158055 158252  198  2  0   63   48   250 0.533  13.67
 8.02 PlyA + 160485 160490    6                               1.05

 9.08 PlyA - 161945 161940    6                              -0.45
 9.07 Term - 163265 163081  185  0  2   29   55   140 0.919   2.51
 9.06 Intr - 164380 164329   52  1  1  101   99    34 0.924   4.28
 9.05 Intr - 170052 169999   54  0  0   50  131    50 0.581   4.68
 9.04 Intr - 174028 173909  120  1  0   70   88   109 0.861   9.79
 9.03 Intr - 176703 176640   64  2  1   87   79    92 0.788   6.92
 9.02 Intr - 180723 180682   42  2  0  104   72    30 0.354   0.36
 9.01 Init - 182591 182539   53  2  2   70   70    59 0.362   2.93

Suboptimal exons with probability > 0.800

Exnum Type S .Begin ...End .Len Fr Ph B/Ac Do/T CodRg P.... Tscr..
----- ---- - ------ ------ ---- -- -- ---- ---- ----- ----- ------

S.001 Term -  39386  39230  157  1  1   86   46   164 0.996   9.41
S.002 Init -  42758  42739   20  2  2  105   89    10 0.982   2.08


Predicted peptide sequence(s):

Predicted coding sequence(s):


>gi568815589f:88901201_89102334|GENSCAN_predicted_peptide_1|112_aa
MGRNQNRKAKNSKNQSASAPPKDRSSLPAKEQSWMENDFDELTEVGFRRLVITNFSELKE
DVRTHRKEAKNLEKRLEEWLTRINSIDKTLNDLMELKTMARELRDICTSFSS

>gi568815589f:88901201_89102334|GENSCAN_predicted_CDS_1|339_bp
atggggagaaaccagaacagaaaagctaaaaattctaaaaaccagagtgcctctgctcct
ccaaaggatcgcagctccttgccagcaaaggaacaaagttggatggagaatgactttgac
gagttgacagaagtaggtttcagaagattggtaataactaacttctcggaactaaaggag
gatgttcgaacccatcgcaaggaagctaaaaaccttgaaaaaagattagaagaatggcta
actagaataaacagcatagacaagaccttaaatgacctgatggagctgaaaaccatggca
cgagaactgcgtgacatatgcacaagcttcagtagctga

>gi568815589f:88901201_89102334|GENSCAN_predicted_peptide_2|353_aa
MKAEIKMFFETNENKDTTYQNLWDTFKAVCRGKLIALNTHKRKQERCKIETLTSQLKELE
KQEQTHSKASRRQEIAKIRAELKEIETQKTLQKINESRSWFFERINKIDRLLARLIKKKR
EKNQIDTIKNDKGDITIDPTEIQTTIRDYYKHLYANKLENLEEMDKFPDTYALPRLNQKE
VESLNRLVTGSEIEAIINSLPTKRSPGPEGFTAEFYQRYKEELVPFLLKLFQSIEKEGML
PNSFYEACIILIPKPGRDTTKKENFRPISLMNIDAKILSKILANRIQQHTKKLIHHDQVG
FIPGMQGRFNIPKSINVFHHINRTKDKKPHDYLNRCRKVLQQNSTALHAKNSQ

>gi568815589f:88901201_89102334|GENSCAN_predicted_CDS_2|1062_bp
atgaaggcagaaataaagatgttctttgaaaccaatgagaacaaagacacaacataccag
aatctctgggacacatttaaagcagtgtgtagagggaaacttatagcactaaatacccac
aagagaaagcaggaaagatgtaaaattgaaaccctaacatcacaattaaaagaactagag
aagcaagagcaaacacattctaaagctagcagaaggcaagaaatagctaagatcagagca
gaactgaaggagatagagacacaaaaaacccttcaaaaaatcaatgaatccaggagctgg
ttttttgaaaggatcaacaaaatagatagactgctagcacgactaataaagaagaaaaga
gagaagaatcaaatagacacaataaaaaatgataaaggggatatcaccattgatcccaca
gaaatacaaactaccatcagagactactataaacacctctatgcaaataaactagaaaat
ctagaagaaatggataaattcccggacacatacgcactcccaagactaaaccagaaagaa
gttgaatccctgaatagactagtaacaggctctgaaattgaggcaataattaatagccta
ccaaccaaaagaagtccaggaccagaaggattcacagccgaattctaccagaggtacaaa
gaggagctggtaccattccttctgaaactattccaatcaatagaaaaagagggaatgctc
cctaactcattttatgaggcctgcatcatcctgataccaaagcctggcagagacacaaca
aaaaaagagaattttagaccaatatccctgatgaacatcgatgcaaaaatcctcagtaaa
atactggcaaaccgaatccagcagcacaccaaaaagcttatccaccacgatcaagttggc
ttcatccctgggatgcaaggccggttcaacatacccaaatcaataaacgtattccatcat
ataaacagaacaaaggacaaaaaaccacatgattatctcaatagatgcagaaaagtcctt
caacaaaattcaacagcccttcatgctaaaaactctcaataa

>gi568815589f:88901201_89102334|GENSCAN_predicted_peptide_3|216_aa
MPDDVLVDGNLDHVVEEVPARFLLHEAAIFLFRYTIDEMRVTKSSSYSGEGKKDAGKGCG
VDLQCFQEYCCHQEAMAFGSVALQGVRGIWAAGGQLRREKQKVVKYLKEKRRGACLLRAL
CEQMRNTLKHMPGNTWRKNGFINQSLAGRDWNSLEGSEEDRKMWESLELPRHLLNGFDKN
ADNDVDNEIQAEVVLDGDKELVGNWSKDDSCYVLAK

>gi568815589f:88901201_89102334|GENSCAN_predicted_CDS_3|651_bp
atgccagatgacgtccttgttgatggaaacctggaccacgtggttgaggaagtgcctgcc
agattcctcctccatgaagctgctatttttctctttcgttacacaattgatgagatgaga
gtcaccaagtccagctcatactcaggggaggggaagaaagatgctgggaaaggctgtggg
gttgatttacaatgtttccaggagtactgctgtcaccaggaagccatggcctttggcagc
gtggccctgcagggtgtgaggggcatctgggcagcaggcggacagctgaggagagaaaag
cagaaagtggtgaagtatctgaaggagaagaggagaggagcatgcctgcttcgagctctg
tgtgagcagatgaggaacacacttaaacacatgcctgggaacacctggaggaaaaatggc
ttcatcaaccagagtcttgcaggcagagattggaacagtttggagggctcagaagaagac
aggaaaatgtgggaaagtttggaacttcctagacacttgttgaatggttttgacaaaaat
gctgataatgatgtggacaatgaaatccaggctgaggtggtcttagatggagataaggaa
cttgttgggaactggagtaaagatgactcttgttatgttttagcaaagtga

>gi568815589f:88901201_89102334|GENSCAN_predicted_peptide_4|108_aa
MAEGRARAEKPEKSQRAGAARGPEEEAEKPVKTKTVSSSNGGESFSRSTEKGQLKELQTS
QRSLQRSPHWIRHSVLTSGLLSASQSLVFLHVVEEAESPEYVVCYPTA

>gi568815589f:88901201_89102334|GENSCAN_predicted_CDS_4|327_bp
atggcggaggggagggcgagagcggagaagcctgaaaagtcacagcgagctggagcagcc
agaggacctgaagaggaagcagaaaaacctgtgaaaacgaagaccgtttcttctagtaat
ggaggggaaagtttcagtcgcagcactgagaagggtcagctgaaggagctgcagacctcc
caacggagtctacaaagatctccacattggattcgccatagcgtcctcacctctggactc
ctgtcagcttctcagagccttgtcttcctgcatgtggttgaggaagctgaatcaccagaa
tatgtggtgtgctacccgacagcctga

>gi568815589f:88901201_89102334|GENSCAN_predicted_peptide_5|56_aa
MPVAPAPSADGEPLQEQGGGLFHRTRSVYNGLELNTWMKVERLFVEKFHQSFSLDN

>gi568815589f:88901201_89102334|GENSCAN_predicted_CDS_5|171_bp
atgccggtggccccagcgccctcagccgacggagagccgctgcaggaacagggaggaggc
cttttccaccgcacccggagcgtttacaacgggctggagctgaatacctggatgaaagtg
gagaggctgttcgtggagaagttccatcagtcgttttccttggacaattaa

>gi568815589f:88901201_89102334|GENSCAN_predicted_peptide_6|420_aa
MVFTEADARGRGLSFLGHSLHIWGSLDYAQIAHNVPALFVMEKDLGKSHREAPVRGNETL
REHYQYVGKLAGRLKEASEGSTLTTVLFLVICSFIVLENLMVLIAIWKNNKFHNRMYFFI
GNLALCDLLAGIAYKVNILMSGKKTFSLSPTVWFLREGSMFVALGASTCSLLAIAIERHL
TMIKMRPYDANKRHRVFLLIGMCWLIAFTLGALPILGWNCLHNLPDCSTILPLYSKKYIA
FCISIFTAILVTIVILYARIYFLVKSSSRKVANHNNSERSMALLRTVVIVVSVFIACWSP
LFILFLIDVACRVQACPILFKAQWFIVLAVLNSAMNPVIYTLASKEMRRAFFRLVCNCLV
RGRGARASPIQPALDPSRSKSSSSNNSSHSPKVKEDLPHTAPSSCIMDKNAALQNGIFCN

>gi568815589f:88901201_89102334|GENSCAN_predicted_CDS_6|1263_bp
atggtgttcacggaggcagatgctcggggccggggcctgagtttcctggggcacagcctc
catatctggggttccctggactatgcccagatagctcataatgtcccagccttatttgtg
atggagaaggacttggggaaaagccaccgggaagcaccggtgcgggggaacgagaccctg
cgggagcattaccagtacgtggggaagttggcgggcaggctgaaggaggcctccgagggc
agcacgctcaccaccgtgctcttcttggtcatctgcagcttcatcgtcttggagaacctg
atggttttgattgccatctggaaaaacaataaatttcacaaccgcatgtactttttcatt
ggcaacctggctctctgcgacctgctggccggcatcgcttacaaggtcaacattctgatg
tctggcaagaagacgttcagcctgtctcccacggtctggttcctcagggagggcagtatg
ttcgtggcccttggggcgtccacctgcagcttactggccatcgccatcgagcggcacttg
acaatgatcaaaatgaggccttacgacgccaacaagaggcaccgcgtcttcctcctgatc
gggatgtgctggctcattgccttcacgctgggcgccctgcccattctgggctggaactgc
ctgcacaatctccctgactgctctaccatcctgcccctctactccaagaagtacattgcc
ttctgcatcagcatcttcacggccatcctggtgaccatcgtgatcctctacgcacgcatc
tacttcctggtgaagtccagcagccgtaaggtggccaaccacaacaactcggagcggtcc
atggcactgctgcggaccgtggtgattgtggtgagcgtgttcatcgcctgctggtcccca
ctcttcatcctcttcctcattgatgtggcctgcagggtgcaggcgtgccccatcctcttc
aaggctcagtggttcatcgtgttggctgtgctcaactccgccatgaacccggtcatctac
acgctggccagcaaggagatgcggcgggccttcttccgtctggtctgcaactgcctggtc
aggggacggggggcccgcgcctcacccatccagcctgcgctcgacccaagcagaagtaaa
tcaagcagcagcaacaatagcagccactctccgaaggtcaaggaagacctgccccacaca
gccccctcatcctgcatcatggacaagaacgcagcacttcagaatgggatcttctgcaac
tga

>gi568815589f:88901201_89102334|GENSCAN_predicted_peptide_7|616_aa
MATALWLLQEGHVDAYACHILECCDGLAQDVIGSIGQAFELRFKQYLQCPTKIPALHDRM
QSLDEPWTEEEGDGSDHPYYNSIPSKMPPPGGFLDTRLKPRPHAPDTAQFAGKEQTYYQG
RHLGDTFGEDWQQTPLRQGERQGSSDIYSTPEGKLHVAPTGEAPTYVNTQQIPPQAWPAA
VSSAESSPRKDLFDMSGFLRSKYSGADVMMVVMMVLLLMVILMVVVVVMVVVMMMMVMML
LMVVVLIVMMMVMMMVVMLLLMVLVVVMMVVMMLMMVLVAKVVVVMVIMVVRCADGADGG
DATAAAVTAAAPVAAGDSDGDDDGYAGDNDGDDDDDDNGDDGDNGDDPDDADGNGGGDNG
DSDDSVDGGDAIAAAAVAGSDSDGGDNDGDDDGYDGNNGDDGDNGDDDGDDGGDADGGGG
ANKSECGDGGDVGDDADDVDDVDDSKGEPFEDALKNQPLGPVLSKAASVECISPVSPRAP
DAKMLEELQAETWYQGEMSRKEAEGLLEKDGDFLVRKSTTNPGSFVLTGMHNGQAKHLLL
VDPEGTEALLMSIPCSESFWDAITSSVRLNCAVWIRTKDRVFDSISHLINHHLESSLPIV
SAGSELCLQQPVERKQ

>gi568815589f:88901201_89102334|GENSCAN_predicted_CDS_7|1851_bp
atggcgacagccctgtggctccttcaggagggacatgtggacgcttatgcttgtcacatt
ttggaatgctgtgatgggctggcccaggatgtcatcggctccatcggacaagcctttgag
ctccggtttaagcaatatttacagtgtcctaccaagattcccgctctccatgatcgaatg
cagagtctggatgagccatggacggaagaggagggagatggctcagaccacccatactac
aacagcatcccaagcaagatgcctcctccagggggctttcttgatactagactgaaaccc
agaccccatgctcctgacacagcccagtttgcaggaaaagagcagacttattaccaggga
agacacttaggagacacttttggcgaagactggcagcaaacacctttaaggcaaggtgag
aggcaagggtcctcggacatctacagcacgccagaagggaaactgcacgtggcccccacg
ggagaagcacccacctacgtcaacactcagcagatcccaccacaggcctggccggctgcg
gtcagcagtgctgagagcagcccaaggaaagacctctttgacatgagtgggtttcttaga
tctaaatatagcggtgctgatgtgatgatggtggtgatgatggtgctgctgctgatggta
attttgatggtggtggtggtggtgatggtggtggtgatgatgatgatggtgatgatgctg
ctgatggtggtggtgttgatagtgatgatgatggtgatgatgatggtggtgatgctgctg
ctgatggtgctggtggtggtgatgatggtggtgatgatgctgatgatggtgctggtggca
aaggtggtggtggtgatggtgataatggtggtgagatgtgctgatggtgctgatggtggt
gatgctactgctgctgctgttactgctgccgctcctgttgctgctggtgacagtgatggt
gatgatgatggttatgctggtgacaatgatggtgatgatgatgatgatgacaatggggat
gatggtgataatggtgatgatcctgatgatgctgatggtaatggtggtggtgataatggg
gatagtgatgatagtgttgatggtggtgatgctattgctgctgctgctgttgctggtagt
gacagtgatggtggtgacaatgatggtgatgatgatggttatgatggtaacaatggggat
gatggtgataatggtgatgacgatggcgacgatggcggtgatgctgatggtggtggtggt
gccaataaaagtgaatgtggggatggtggcgatgttggggatgatgctgacgatgttgat
gatgtagatgatagcaaaggtgaaccttttgaagatgctctcaagaaccagcccttgggg
cccgtgttaagcaaggcagcctccgtggagtgcatcagccctgtgtcacctagagcccca
gatgccaagatgctggaggaactgcaagccgagacttggtaccaaggagagatgagcagg
aaggaggcagaggggctgctggagaaagacggagacttcctggtcaggaagagcaccacc
aacccgggctcctttgtcctcacgggcatgcacaatggccaggccaagcacctgctgctc
gtggacccagaaggcacggaggctctgctgatgtccattccctgctcagaatccttctgg
gatgccatcacctccagtgtaaggttaaactgtgcagtgtggatccggacaaaggacaga
gtctttgacagtatcagccacctcatcaaccaccacctagaaagcagcctgcccattgtc
tctgcagggagtgagctgtgtctccagcagccagtggagaggaagcagtga

>gi568815589f:88901201_89102334|GENSCAN_predicted_peptide_8|65_aa
MVVEDIVEDVVEDMVEDGGGGRCGGWWWRTVVEDVVEDAVEDVVEDAVEDDGGGFSGGHG
GGQWC

>gi568815589f:88901201_89102334|GENSCAN_predicted_CDS_8|198_bp
atggtggtggaggacattgtagaagatgtggtggaggacatggtggaggacggtggtgga
ggacgttgtggaggatggtggtggaggacggtggtggaggatgtagtggaggatgcggtg
gaggacgtagtggaggatgcagtagaggatgatggtggaggatttagtggtggacatggt
ggaggacagtggtgttag

>gi568815589f:88901201_89102334|GENSCAN_predicted_peptide_9|189_aa
MEKMTHEKKREAVPKMKDHPYLTKGSGAAAEREAISRVCEAVPGAKGAFKKRKPPSKMLS
SILGKSNLQFAGMSISLTISTASLNLRTPDSKQIIANHHMRSISFASGGDPDTTDYVAYV
AKDPVNRRGANQEYFLPTIQFLSSDMGIRIDSTCPVAASPGSLRFACGDTVKTNARPVMQ
KKISTIFGA

>gi568815589f:88901201_89102334|GENSCAN_predicted_CDS_9|570_bp
atggagaaaatgacccatgagaaaaagagagaggccgtccccaagatgaaagatcatccc
tacctcaccaaggggtcaggagctgcagctgaaagggaagccatcagccgcgtctgtgaa
gctgtgcctggtgcgaagggagccttcaagaagagaaagcctccaagcaaaatgctgtcc
agcatcttgggaaagagcaacctccagtttgcgggaatgagcatctctctgaccatctcc
acggccagtctgaacctgcgaactccggactccaaacagatcatagcgaatcaccacatg
cggtccatctccttcgcctctgggggagacccggacacaactgactatgttgcatatgtg
gctaaggaccctgttaatcgcagaggggcaaaccaagagtactttctgcccacaatacag
ttcctgtccagcgacatgggaatcaggatcgattccacatgtcccgtggctgcctcacca
ggctctctcaggtttgcatgtggtgatactgtgaagacaaatgccagacctgtgatgcag
aaaaagatctccaccatttttggtgcttga