hmmpfam - search one or more sequences against HMM database HMMER 2.3.2 (Oct 2003) Copyright (C) 1992-2003 HHMI/Washington University School of Medicine Freely distributed under the GNU General Public License (GPL) - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - HMM file: /data/Pfam.bin Sequence file: /tmp/20080305/iprscan-20080305-21224917/chunk_1/iprscan-20080305-21224917.nocrc - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query sequence: pF1KB5469 Accession: [none] Description: [none] Scores for sequence family classification (score includes all domains): Model Description Score E-value N -------- ----------- ----- ------- --- PF01451.11.ls Low molecular weight phosphotyrosine protein 251.3 1.8e-72 1 PF01451.11.fs Low molecular weight phosphotyrosine protein 249.4 7.2e-72 1 Parsed for domains: Model Domain seq-f seq-t hmm-f hmm-t score E-value -------- ------- ----- ----- ----- ----- ----- ------- PF01451.11.fs 1/1 7 156 .. 1 156 [] 249.4 7.2e-72 PF01451.11.ls 1/1 7 156 .. 1 156 [] 251.3 1.8e-72 Alignments of top-scoring domains: PF01451.11.fs: domain 1 of 1, from 7 to 156: score 249.4, E = 7.2e-72 *->mkvLFVCtGNiCRSpMAEalfrallpkkGLevkieveSAGrvdSagT ++vLFVC+GNiCRSp+AEa+fr+l+++ ++ + +rvdSa+T pF1KB5469 7 KSVLFVCLGNICRSPIAEAVFRKLVTD------QNISENWRVDSAAT 47 sgthvggsvdpravevlkehGidisghrarqlteedlksipfDliltmdg sg+++g+++d+r ++++k+hGi++s h+arq+t+ed++ fD+il+md+ pF1KB5469 48 SGYEIGNPPDYRGQSCMKRHGIPMS-HVARQITKEDFAT--FDYILCMDE 94 eairlilp.laqppevrgkvkllgdwae..qkdidDPyygsidgFeevrd +++r+++++++ ++ +++k++llg++++++q++i+DPyyg++++Fe+v++ pF1KB5469 95 SNLRDLNRkSNRVKTCKAKIELLGSYDPqkQLIIEDPYYGNDSDFETVYQ 144 eIeervkkllke<-* ++ ++++++l++ pF1KB5469 145 QCVRCCRAFLEK 156 PF01451.11.ls: domain 1 of 1, from 7 to 156: score 251.3, E = 1.8e-72 *->mkvLFVCtGNiCRSpMAEalfrallpkkGLevkieveSAGrvdSagT ++vLFVC+GNiCRSp+AEa+fr+l+++ ++ + +rvdSa+T pF1KB5469 7 KSVLFVCLGNICRSPIAEAVFRKLVTD------QNISENWRVDSAAT 47 sgthvggsvdpravevlkehGidisghrarqlteedlksipfDliltmdg sg+++g+++d+r ++++k+hGi++s h+arq+t+ed++ fD+il+md+ pF1KB5469 48 SGYEIGNPPDYRGQSCMKRHGIPMS-HVARQITKEDFAT--FDYILCMDE 94 eairlilp.laqppevrgkvkllgdwae..qkdidDPyygsidgFeevrd +++r+++++++ ++ +++k++llg++++++q++i+DPyyg++++Fe+v++ pF1KB5469 95 SNLRDLNRkSNRVKTCKAKIELLGSYDPqkQLIIEDPYYGNDSDFETVYQ 144 eIeervkkllke<-* ++ ++++++l++ pF1KB5469 145 QCVRCCRAFLEK 156 //