hmmpfam - search one or more sequences against HMM database
HMMER 2.3.2 (Oct 2003)
Copyright (C) 1992-2003 HHMI/Washington University School of Medicine
Freely distributed under the GNU General Public License (GPL)
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HMM file:                 /data/Pfam.bin
Sequence file:            /tmp/20080305/iprscan-20080305-13182547/chunk_1/iprscan-20080305-13182547.nocrc
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Query sequence: pF1KB5099
Accession:      [none]
Description:    [none]

Scores for sequence family classification (score includes all domains):
Model    Description                                    Score    E-value  N 
-------- -----------                                    -----    ------- ---
PF01728.9.fs FtsJ-like methyltransferase                     82.1    3.4e-25   1
PF01728.9.ls FtsJ-like methyltransferase                     48.7    1.8e-11   1

Parsed for domains:
Model    Domain  seq-f seq-t    hmm-f hmm-t      score  E-value
-------- ------- ----- -----    ----- -----      -----  -------
PF01728.9.ls   1/1     114   322 ..     1   216 []    48.7  1.8e-11
PF01728.9.fs   1/1     227   322 ..   114   216 .]    82.1  3.4e-25

Alignments of top-scoring domains:
PF01728.9.ls: domain 1 of 1, from 114 to 322: score 48.7, E = 1.8e-11
                   *->yRsRsafKLleinekFkllkprn....gkrVlDLGAAPGgWsQVavk
                          ++ K  ei   F l++++  +++    l+L+ APG ++  +  
   pF1KB5099   114    ----AWCKFHEILCSFPLIPQEAfqngKLNSLHLCEAPGAFIASLNH 156  

                   rlgplckfgetLgseeeaekg.kvvavDlqpikpipgdnscvitlqgDit
                    l           ++ ++++  + va +l+p +  +  +  +  +  D +
   pF1KB5099   157 YL-----------KSHRFPCHwSWVANTLNPYHEAND-D--LMMIMDDRL 192  

                   dektlakw...........irellgnaekkqk.....atvDlVlsDgapI
                     +tl  w  +++++++   +++l +    q   ++ atv+lV++Dg++ 
   pF1KB5099   193 IANTLHWWyfgpdntgdimTLKFLTGL---QNfissmATVHLVTADGSF- 238  

                   STvLnvtGnrdiDeyrsieLvlaaldlaEnlevLkpgGnfVvKvFrgedp
                       + +Gn  ++e++ + L ++++ +a  l  L +gG+fV+K+F  +++
   pF1KB5099   239 ----DCQGNPGEQEALVSSLHYCEVVTA--LTTLGNGGSFVLKMFTMFEH 282  

                   etldllnllkklFrkvkviKPpaSRpsSaEiYlVcrgfkg<-*
                    ++ l++ll  +F++v+v+KP  S   ++E+Y+Vc+ +kg   
   pF1KB5099   283 CSINLMYLLNCCFDQVHVFKPATSKAGNSEVYVVCLHYKG    322  

PF01728.9.fs: domain 1 of 1, from 227 to 322: score 82.1, E = 3.4e-25
                   *->atvDlVlsDgapISTvLnvtGnrdiDeyrsieLvlaaldlaEnlevL
                      atv+lV++Dg++     + +Gn  ++e++ + L ++++ +a  l  L
   pF1KB5099   227    ATVHLVTADGSF-----DCQGNPGEQEALVSSLHYCEVVTA--LTTL 266  

                   kpgGnfVvKvFrgedpetldllnllkklFrkvkviKPpaSRpsSaEiYlV
                    +gG+fV+K+F  +++ ++ l++ll  +F++v+v+KP  S   ++E+Y+V
   pF1KB5099   267 GNGGSFVLKMFTMFEHCSINLMYLLNCCFDQVHVFKPATSKAGNSEVYVV 316  

                   crgfkg<-*
                   c+ +kg   
   pF1KB5099   317 CLHYKG    322  

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