Result of FASTA (ccds) for pF1KB4613
FASTA searches a protein or DNA sequence data bank 36.3.4 Apr, 2011
Please cite:
W.R. Pearson & D.J. Lipman PNAS (1988) 85:2444-2448

Query: pF1KB4613, 265 aa
  1>>>pF1KB4613 265 - 265 aa - 265 aa
Library: human.CCDS.faa
  18511270 residues in 32554 sequences

Statistics:  Expectation_n fit: rho(ln(x))= 6.2953+/-0.000681; mu= 13.4465+/- 0.042
 mean_var=155.4063+/-32.927, 0's: 0 Z-trim(115.4): 55  B-trim: 0 in 0/51
 Lambda= 0.102882
 statistics sampled from 15876 (15932) to 15876 sequences
Algorithm: FASTA (3.7 Nov 2010) [optimized]
Parameters: BL50 matrix (15:-5), open/ext: -10/-2
 ktup: 2, E-join: 1 (0.805), E-opt: 0.2 (0.489), width:  16
 Scan time:  2.850

The best scores are:                                      opt bits E(32554)
CCDS5040.1 POU3F2 gene_id:5454|Hs108|chr6          ( 443) 1424 222.4 4.4e-58
CCDS33265.1 POU3F3 gene_id:5455|Hs108|chr2         ( 500) 1163 183.7 2.2e-46
CCDS14450.1 POU3F4 gene_id:5456|Hs108|chrX         ( 361) 1058 167.9 8.6e-42
CCDS30679.1 POU3F1 gene_id:5453|Hs108|chr1         ( 451) 1052 167.2 1.8e-41
CCDS8431.1 POU2F3 gene_id:25833|Hs108|chr11        ( 436)  693 113.9   2e-25
CCDS58190.1 POU2F3 gene_id:25833|Hs108|chr11       ( 438)  693 113.9   2e-25
CCDS55655.1 POU2F1 gene_id:5451|Hs108|chr1         ( 703)  691 113.8 3.3e-25
CCDS55656.1 POU2F1 gene_id:5451|Hs108|chr1         ( 755)  691 113.8 3.5e-25
CCDS1259.2 POU2F1 gene_id:5451|Hs108|chr1          ( 766)  691 113.9 3.5e-25
CCDS34391.1 POU5F1 gene_id:5460|Hs108|chr6         ( 360)  635 105.2 6.8e-23
CCDS55274.1 POU5F1B gene_id:5462|Hs108|chr8        ( 359)  630 104.4 1.1e-22
CCDS2919.1 POU1F1 gene_id:5449|Hs108|chr3          ( 291)  613 101.8 5.7e-22
CCDS46873.1 POU1F1 gene_id:5449|Hs108|chr3         ( 317)  596 99.3 3.5e-21
CCDS34074.1 POU4F2 gene_id:5458|Hs108|chr4         ( 409)  515 87.4 1.7e-17
CCDS4281.1 POU4F3 gene_id:5459|Hs108|chr5          ( 338)  512 86.9 2.1e-17
CCDS47398.2 POU5F1 gene_id:5460|Hs108|chr6         ( 190)  499 84.7 5.4e-17
CCDS59489.1 POU5F2 gene_id:134187|Hs108|chr5       ( 328)  493 84.0 1.4e-16
CCDS31996.1 POU4F1 gene_id:5457|Hs108|chr13        ( 419)  490 83.7 2.3e-16
CCDS31803.1 POU6F1 gene_id:5463|Hs108|chr12        ( 301)  454 78.2 7.5e-15
CCDS81691.1 POU6F1 gene_id:5463|Hs108|chr12        ( 611)  454 78.6 1.2e-14
CCDS58665.1 POU2F2 gene_id:5452|Hs108|chr19        ( 400)  422 73.6 2.4e-13
CCDS33035.1 POU2F2 gene_id:5452|Hs108|chr19        ( 463)  422 73.7 2.7e-13
CCDS56094.1 POU2F2 gene_id:5452|Hs108|chr19        ( 467)  413 72.3 6.7e-13
CCDS56095.1 POU2F2 gene_id:5452|Hs108|chr19        ( 479)  413 72.4 6.8e-13
CCDS55103.1 POU6F2 gene_id:11281|Hs108|chr7        ( 655)  409 71.9 1.3e-12


>>CCDS5040.1 POU3F2 gene_id:5454|Hs108|chr6               (443 aa)
 initn: 1382 init1: 1382 opt: 1424  Z-score: 1156.3  bits: 222.4 E(32554): 4.4e-58
Smith-Waterman score: 1425; 79.6% identity (88.0% similar) in 275 aa overlap (2-265:170-443)

                                              10        20         
pF1KB4                              MATAASNHY--SLLTSSASIVHAEPP---GG
                                     ..::. :   :. .:........:    .:
CCDS50 QQQQQQQQQQRPPHLVHHAANHHPGPGAWRSAAAAAHLPPSMGASNGGLLYSQPSFTVNG
     140       150       160       170       180       190         

         30             40        50        60         70        80
pF1KB4 MQQGAGG-----YREAQSLVQGDYGALQSNGHPLSHAHQWITAPPP-QGPPGHPGAHHDP
       :  ::::     ....   .. .    . . :: :: ::    ::: :::::::::::::
CCDS50 ML-GAGGQPAGLHHHGLRDAHDEPHHADHHPHPHSHPHQQPPPPPPPQGPPGHPGAHHDP
     200        210       220       230       240       250        

               90       100       110       120       130       140
pF1KB4 HSDEDTPTSDDLEQFAKQFKQRRIKLGFTQADVGLALGTLYGNVFSQTTICRFEALQLSF
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS50 HSDEDTPTSDDLEQFAKQFKQRRIKLGFTQADVGLALGTLYGNVFSQTTICRFEALQLSF
      260       270       280       290       300       310        

              150       160       170       180       190       200
pF1KB4 KNMCKLKPLLNKWLEEADSSSGSPTSIDKIAAQGRKRKKRTSIEVSVKGALESHFLKCPK
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS50 KNMCKLKPLLNKWLEEADSSSGSPTSIDKIAAQGRKRKKRTSIEVSVKGALESHFLKCPK
      320       330       340       350       360       370        

              210       220       230       240       250       260
pF1KB4 PSAQEITSLADSLQLEKEVVRVWFCNRRQKEKRMTPPGGTLPGAEDVYGGSRDTPPHHGV
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS50 PSAQEITSLADSLQLEKEVVRVWFCNRRQKEKRMTPPGGTLPGAEDVYGGSRDTPPHHGV
      380       390       400       410       420       430        

            
pF1KB4 QTPVQ
       :::::
CCDS50 QTPVQ
      440   

>--
 initn: 446 init1: 430 opt: 437  Z-score: 364.6  bits: 75.9 E(32554): 5.5e-14
Smith-Waterman score: 437; 89.3% identity (89.3% similar) in 75 aa overlap (1-75:1-75)

               10        20        30        40        50        60
pF1KB4 MATAASNHYSLLTSSASIVHAEPPGGMQQGAGGYREAQSLVQGDYGALQSNGHPLSHAHQ
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS50 MATAASNHYSLLTSSASIVHAEPPGGMQQGAGGYREAQSLVQGDYGALQSNGHPLSHAHQ
               10        20        30        40        50        60

               70        80        90       100       110       120
pF1KB4 WITAPPPQGPPGHPGAHHDPHSDEDTPTSDDLEQFAKQFKQRRIKLGFTQADVGLALGTL
       ::::    :  :  :                                             
CCDS50 WITALSHGGGGGGGGGGGGGGGGGGGGGDGSPWSTSPLGQPDIKPSVVVQQGGRGDELHG
               70        80        90       100       110       120

>>CCDS33265.1 POU3F3 gene_id:5455|Hs108|chr2              (500 aa)
 initn: 1218 init1: 1078 opt: 1163  Z-score: 946.3  bits: 183.7 E(32554): 2.2e-46
Smith-Waterman score: 1216; 74.4% identity (79.6% similar) in 270 aa overlap (18-265:233-500)

                            10        20         30           40   
pF1KB4              MATAASNHYSLLTSSASIVHAEP-PGGMQQGAGGYREA---QSLVQG
                                     .. : : :::   ::::  ..    .::.:
CCDS33 AAHLPSMAGGQQPPPQSLLYSQPGGFTVNGMLSAPPGPGGGGGGAGGGAQSLVHPGLVRG
            210       220       230       240       250       260  

            50        60            70                 80        90
pF1KB4 DYGALQSNGHPLSHAHQWITAPP-P---QGPPGH--------PGAH-HDPHSDEDTPTSD
       :   :  . :   : :.    :: :   :::: :        :: . :::::::::::::
CCDS33 DTPELAEHHH--HHHHHAHPHPPHPHHAQGPPHHGGGGGGAGPGLNSHDPHSDEDTPTSD
            270         280       290       300       310       320

              100       110       120       130       140       150
pF1KB4 DLEQFAKQFKQRRIKLGFTQADVGLALGTLYGNVFSQTTICRFEALQLSFKNMCKLKPLL
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS33 DLEQFAKQFKQRRIKLGFTQADVGLALGTLYGNVFSQTTICRFEALQLSFKNMCKLKPLL
              330       340       350       360       370       380

              160       170       180       190       200       210
pF1KB4 NKWLEEADSSSGSPTSIDKIAAQGRKRKKRTSIEVSVKGALESHFLKCPKPSAQEITSLA
       ::::::::::.::::::::::::::::::::::::::::::::::::::::::::::.::
CCDS33 NKWLEEADSSTGSPTSIDKIAAQGRKRKKRTSIEVSVKGALESHFLKCPKPSAQEITNLA
              390       400       410       420       430       440

              220       230       240       250            260     
pF1KB4 DSLQLEKEVVRVWFCNRRQKEKRMTPPGGTLPGAEDVYGG----SRDTPP-HHGVQTPVQ
       ::::::::::::::::::::::::::::      .:::.     : :::: :::.:: ::
CCDS33 DSLQLEKEVVRVWFCNRRQKEKRMTPPGIQQQTPDDVYSQVGTVSADTPPPHHGLQTSVQ
              450       460       470       480       490       500

>>CCDS14450.1 POU3F4 gene_id:5456|Hs108|chrX              (361 aa)
 initn: 1141 init1: 1024 opt: 1058  Z-score: 863.7  bits: 167.9 E(32554): 8.6e-42
Smith-Waterman score: 1058; 77.2% identity (84.9% similar) in 219 aa overlap (46-257:143-359)

          20        30        40        50          60        70   
pF1KB4 ASIVHAEPPGGMQQGAGGYREAQSLVQGDYGALQSNG--HPLSHAHQWITAPPPQGPPGH
                                     : :. .:   : . :      :  . :: :
CCDS14 AWGASPAPNPSITSSGQPLNVYSQPGFTVSGMLEHGGLTPPPAAASAQSLHPVLREPPDH
            120       130       140       150       160       170  

               80        90       100       110       120       130
pF1KB4 P--GAHH-DPHSDEDTPTSDDLEQFAKQFKQRRIKLGFTQADVGLALGTLYGNVFSQTTI
          :.:: . ::::.:::::.:::::::::::::::::::::::::::::::::::::::
CCDS14 GELGSHHCQDHSDEETPTSDELEQFAKQFKQRRIKLGFTQADVGLALGTLYGNVFSQTTI
            180       190       200       210       220       230  

              140       150       160       170       180       190
pF1KB4 CRFEALQLSFKNMCKLKPLLNKWLEEADSSSGSPTSIDKIAAQGRKRKKRTSIEVSVKGA
       ::::::::::::::::::::::::::::::.::::::::::::::::::::::::::::.
CCDS14 CRFEALQLSFKNMCKLKPLLNKWLEEADSSTGSPTSIDKIAAQGRKRKKRTSIEVSVKGV
            240       250       260       270       280       290  

              200       210       220       230       240       250
pF1KB4 LESHFLKCPKPSAQEITSLADSLQLEKEVVRVWFCNRRQKEKRMTPPGGTLPGAEDVYGG
       ::.::::::::.::::.:::::::::::::::::::::::::::::::   :  ..::. 
CCDS14 LETHFLKCPKPAAQEISSLADSLQLEKEVVRVWFCNRRQKEKRMTPPGDQQP--HEVYSH
            300       310       320       330       340         350

                260     
pF1KB4 S--RDTPPHHGVQTPVQ
       .   ::  :        
CCDS14 TVKTDTSCHDL      
              360       

>>CCDS30679.1 POU3F1 gene_id:5453|Hs108|chr1              (451 aa)
 initn: 1086 init1: 995 opt: 1052  Z-score: 857.8  bits: 167.2 E(32554): 1.8e-41
Smith-Waterman score: 1059; 66.5% identity (75.4% similar) in 272 aa overlap (20-263:161-427)

                          10        20        30        40         
pF1KB4            MATAASNHYSLLTSSASIVHAEPPGGMQQGAGGYREAQSLVQGDYGA--
                                     .:  :::   :.::   :  :. :  ::  
CCDS30 GSTAHHLGPAMSPSPGASGGHQPQPLGLYAQAAYPGG---GGGGL--AGMLAAGGGGAGP
              140       150       160          170         180     

         50        60         70                    80             
pF1KB4 -LQSNGHPLSHAHQWITAPPPQ-GPPGHP------------GAHHDP-----------HS
        :.   :  .:  :   .:::. :  ::             .::  :           ::
CCDS30 GLHHALHEDGHEAQLEPSPPPHLGAHGHAHGHAHAGGLHAAAAHLHPGAGGGGSSVGEHS
         190       200       210       220       230       240     

             90       100       110       120       130       140  
pF1KB4 DEDTPTSDDLEQFAKQFKQRRIKLGFTQADVGLALGTLYGNVFSQTTICRFEALQLSFKN
       :::.:.::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS30 DEDAPSSDDLEQFAKQFKQRRIKLGFTQADVGLALGTLYGNVFSQTTICRFEALQLSFKN
         250       260       270       280       290       300     

            150       160       170       180       190       200  
pF1KB4 MCKLKPLLNKWLEEADSSSGSPTSIDKIAAQGRKRKKRTSIEVSVKGALESHFLKCPKPS
       ::::::::::::::.::::::::..::::::::::::::::::.::::::::::::::::
CCDS30 MCKLKPLLNKWLEETDSSSGSPTNLDKIAAQGRKRKKRTSIEVGVKGALESHFLKCPKPS
         310       320       330       340       350       360     

            210       220       230       240        250       260 
pF1KB4 AQEITSLADSLQLEKEVVRVWFCNRRQKEKRMTPPGGT-LPGAEDVYGGSRDTPPHHGVQ
       :.:::.:::::::::::::::::::::::::::: .:.  :  .:::. ..  :   :..
CCDS30 AHEITGLADSLQLEKEVVRVWFCNRRQKEKRMTPAAGAGHPPMDDVYAPGELGPGGGGAS
         370       380       390       400       410       420     

                                 
pF1KB4 TPVQ                      
        :                        
CCDS30 PPSAPPPPPPAALHHHHHHTLPGSVQ
         430       440       450 

>>CCDS8431.1 POU2F3 gene_id:25833|Hs108|chr11             (436 aa)
 initn: 704 init1: 388 opt: 693  Z-score: 570.0  bits: 113.9 E(32554): 2e-25
Smith-Waterman score: 693; 50.0% identity (69.6% similar) in 260 aa overlap (11-256:104-359)

                                   10        20          30        
pF1KB4                     MATAASNHYSLLTSSASIVHAEPPG--GMQQGAGGYREAQ
                                     : . :  ..    ::  :.: .   . . :
CCDS84 GNQMSGLNASPCQDMASLHPLQQLVLVPGHLQSVSQFLLSQTQPGQQGLQPNLLPFPQQQ
            80        90       100       110       120       130   

          40         50        60        70        80          90  
pF1KB4 S---LVQGDYG-ALQSNGHPLSHAHQWITAPPPQGPPGHPGAHHDPHSD-EDTPTS-DDL
       :   : :   : : :. :::   . .    :  ..    :  .: : :   : :.. ..:
CCDS84 SGLLLPQTGPGLASQAFGHPGLPGSS--LEPHLEASQHLPVPKHLPSSGGADEPSDLEEL
           140       150         160       170       180       190 

            100       110       120       130       140       150  
pF1KB4 EQFAKQFKQRRIKLGFTQADVGLALGTLYGNVFSQTTICRFEALQLSFKNMCKLKPLLNK
       :.::: ::::::::::::.:::::.: :::: :::::: :::::.:::::::::::::.:
CCDS84 EKFAKTFKQRRIKLGFTQGDVGLAMGKLYGNDFSQTTISRFEALNLSFKNMCKLKPLLEK
             200       210       220       230       240       250 

            160            170        180       190       200      
pF1KB4 WLEEADSSSG-----SPTSIDKIAAQ-GRKRKKRTSIEVSVKGALESHFLKCPKPSAQEI
       ::..:.:: .     .:.:  ...   :::::::::::.... .::..:   ::::..::
CCDS84 WLNDAESSPSDPSVSTPSSYPSLSEVFGRKRKKRTSIETNIRLTLEKRFQDNPKPSSEEI
             260       270       280       290       300       310 

        210       220       230       240       250       260      
pF1KB4 TSLADSLQLEKEVVRVWFCNRRQKEKRMTPPGGTLPGAEDVYGGSRDTPPHHGVQTPVQ 
       . .:..:..::::::::::::::::::.. : .: :    ::. :: . :          
CCDS84 SMIAEQLSMEKEVVRVWFCNRRQKEKRINCPVAT-PIKPPVYN-SRLVSPSGSLGPLSVP
             320       330       340        350        360         

CCDS84 PVHSTMPGTVTSSCSPGNNSRPSSPGSGLHASSPTASQNNSKAAVNSASSFNSSGSWYRW
     370       380       390       400       410       420         

>>CCDS58190.1 POU2F3 gene_id:25833|Hs108|chr11            (438 aa)
 initn: 704 init1: 388 opt: 693  Z-score: 570.0  bits: 113.9 E(32554): 2e-25
Smith-Waterman score: 693; 50.0% identity (69.6% similar) in 260 aa overlap (11-256:106-361)

                                   10        20          30        
pF1KB4                     MATAASNHYSLLTSSASIVHAEPPG--GMQQGAGGYREAQ
                                     : . :  ..    ::  :.: .   . . :
CCDS58 GNQMSGLNASPCQDMASLHPLQQLVLVPGHLQSVSQFLLSQTQPGQQGLQPNLLPFPQQQ
          80        90       100       110       120       130     

          40         50        60        70        80          90  
pF1KB4 S---LVQGDYG-ALQSNGHPLSHAHQWITAPPPQGPPGHPGAHHDPHSD-EDTPTS-DDL
       :   : :   : : :. :::   . .    :  ..    :  .: : :   : :.. ..:
CCDS58 SGLLLPQTGPGLASQAFGHPGLPGSS--LEPHLEASQHLPVPKHLPSSGGADEPSDLEEL
         140       150       160         170       180       190   

            100       110       120       130       140       150  
pF1KB4 EQFAKQFKQRRIKLGFTQADVGLALGTLYGNVFSQTTICRFEALQLSFKNMCKLKPLLNK
       :.::: ::::::::::::.:::::.: :::: :::::: :::::.:::::::::::::.:
CCDS58 EKFAKTFKQRRIKLGFTQGDVGLAMGKLYGNDFSQTTISRFEALNLSFKNMCKLKPLLEK
           200       210       220       230       240       250   

            160            170        180       190       200      
pF1KB4 WLEEADSSSG-----SPTSIDKIAAQ-GRKRKKRTSIEVSVKGALESHFLKCPKPSAQEI
       ::..:.:: .     .:.:  ...   :::::::::::.... .::..:   ::::..::
CCDS58 WLNDAESSPSDPSVSTPSSYPSLSEVFGRKRKKRTSIETNIRLTLEKRFQDNPKPSSEEI
           260       270       280       290       300       310   

        210       220       230       240       250       260      
pF1KB4 TSLADSLQLEKEVVRVWFCNRRQKEKRMTPPGGTLPGAEDVYGGSRDTPPHHGVQTPVQ 
       . .:..:..::::::::::::::::::.. : .: :    ::. :: . :          
CCDS58 SMIAEQLSMEKEVVRVWFCNRRQKEKRINCPVAT-PIKPPVYN-SRLVSPSGSLGPLSVP
           320       330       340        350        360       370 

CCDS58 PVHSTMPGTVTSSCSPGNNSRPSSPGSGLHASSPTASQNNSKAAVNSASSFNSSGSWYRW
             380       390       400       410       420       430 

>>CCDS55655.1 POU2F1 gene_id:5451|Hs108|chr1              (703 aa)
 initn: 661 init1: 372 opt: 691  Z-score: 566.0  bits: 113.8 E(32554): 3.3e-25
Smith-Waterman score: 709; 50.2% identity (72.9% similar) in 255 aa overlap (8-240:156-405)

                                      10        20        30       
pF1KB4                        MATAASNHYSLLTSSASIVHAEPPGGMQQGAGGYREA
                                     : .   . :... .. : :.:    :  .:
CCDS55 MLAGGQITGDLQQLQQLQQQNLNLQQFVLVHPTTNLQPAQFIISQTPQGQQ----GLLQA
         130       140       150       160       170           180 

        40             50              60        70          80    
pF1KB4 QSLV-----QGDYGALQSN------GHPLSHAHQWITAPPPQGPPGHPGAHH--DPHSDE
       :.:.     :.. . :::.      ..: . ..  :.: : :  :   .. .  :  : :
CCDS55 QNLLTQLPQQSQANLLQSQPSITLTSQPATPTRT-IAATPIQTLPQSQSTPKRIDTPSLE
             190       200       210        220       230       240

           90       100       110       120       130       140    
pF1KB4 DTPTSDDLEQFAKQFKQRRIKLGFTQADVGLALGTLYGNVFSQTTICRFEALQLSFKNMC
       .    ..:::::: ::::::::::::.:::::.: :::: :::::: :::::.:::::::
CCDS55 EPSDLEELEQFAKTFKQRRIKLGFTQGDVGLAMGKLYGNDFSQTTISRFEALNLSFKNMC
              250       260       270       280       290       300

          150            160       170         180       190       
pF1KB4 KLKPLLNKWLEEA-----DSSSGSPTSIDKIAAQG--RKRKKRTSIEVSVKGALESHFLK
       ::::::.:::..:     ::: .::..... . .:  :.::::::::.... :::. ::.
CCDS55 KLKPLLEKWLNDAENLSSDSSLSSPSALNSPGIEGLSRRRKKRTSIETNIRVALEKSFLE
              310       320       330       340       350       360

       200       210       220       230         240       250     
pF1KB4 CPKPSAQEITSLADSLQLEKEVVRVWFCNRRQKEKRMTPP--GGTLPGAEDVYGGSRDTP
         ::...::: .::.:..::::.:::::::::::::..::  :::               
CCDS55 NQKPTSEEITMIADQLNMEKEVIRVWFCNRRQKEKRINPPSSGGTSSSPIKAIFPSPTSL
              370       380       390       400       410       420

         260                                                       
pF1KB4 PHHGVQTPVQ                                                  
                                                                   
CCDS55 VATTPSLVTSSAATTLTVSPVLPLTSAAVTNLSVTGTSDTTSNNTATVISTAPPASSAVT
              430       440       450       460       470       480

>>CCDS55656.1 POU2F1 gene_id:5451|Hs108|chr1              (755 aa)
 initn: 661 init1: 372 opt: 691  Z-score: 565.6  bits: 113.8 E(32554): 3.5e-25
Smith-Waterman score: 709; 50.2% identity (72.9% similar) in 255 aa overlap (8-240:208-457)

                                      10        20        30       
pF1KB4                        MATAASNHYSLLTSSASIVHAEPPGGMQQGAGGYREA
                                     : .   . :... .. : :.:    :  .:
CCDS55 LSQPIQIAQDLQQLQQLQQQNLNLQQFVLVHPTTNLQPAQFIISQTPQGQQ----GLLQA
       180       190       200       210       220           230   

        40             50              60        70          80    
pF1KB4 QSLV-----QGDYGALQSN------GHPLSHAHQWITAPPPQGPPGHPGAHH--DPHSDE
       :.:.     :.. . :::.      ..: . ..  :.: : :  :   .. .  :  : :
CCDS55 QNLLTQLPQQSQANLLQSQPSITLTSQPATPTRT-IAATPIQTLPQSQSTPKRIDTPSLE
           240       250       260        270       280       290  

           90       100       110       120       130       140    
pF1KB4 DTPTSDDLEQFAKQFKQRRIKLGFTQADVGLALGTLYGNVFSQTTICRFEALQLSFKNMC
       .    ..:::::: ::::::::::::.:::::.: :::: :::::: :::::.:::::::
CCDS55 EPSDLEELEQFAKTFKQRRIKLGFTQGDVGLAMGKLYGNDFSQTTISRFEALNLSFKNMC
            300       310       320       330       340       350  

          150            160       170         180       190       
pF1KB4 KLKPLLNKWLEEA-----DSSSGSPTSIDKIAAQG--RKRKKRTSIEVSVKGALESHFLK
       ::::::.:::..:     ::: .::..... . .:  :.::::::::.... :::. ::.
CCDS55 KLKPLLEKWLNDAENLSSDSSLSSPSALNSPGIEGLSRRRKKRTSIETNIRVALEKSFLE
            360       370       380       390       400       410  

       200       210       220       230         240       250     
pF1KB4 CPKPSAQEITSLADSLQLEKEVVRVWFCNRRQKEKRMTPP--GGTLPGAEDVYGGSRDTP
         ::...::: .::.:..::::.:::::::::::::..::  :::               
CCDS55 NQKPTSEEITMIADQLNMEKEVIRVWFCNRRQKEKRINPPSSGGTSSSPIKAIFPSPTSL
            420       430       440       450       460       470  

         260                                                       
pF1KB4 PHHGVQTPVQ                                                  
                                                                   
CCDS55 VATTPSLVTSSAATTLTVSPVLPLTSAAVTNLSVTGTSDTTSNNTATVISTAPPASSAVT
            480       490       500       510       520       530  

>>CCDS1259.2 POU2F1 gene_id:5451|Hs108|chr1               (766 aa)
 initn: 661 init1: 372 opt: 691  Z-score: 565.5  bits: 113.9 E(32554): 3.5e-25
Smith-Waterman score: 709; 50.2% identity (72.9% similar) in 255 aa overlap (8-240:219-468)

                                      10        20        30       
pF1KB4                        MATAASNHYSLLTSSASIVHAEPPGGMQQGAGGYREA
                                     : .   . :... .. : :.:    :  .:
CCDS12 LSQPIQIAQDLQQLQQLQQQNLNLQQFVLVHPTTNLQPAQFIISQTPQGQQ----GLLQA
      190       200       210       220       230           240    

        40             50              60        70          80    
pF1KB4 QSLV-----QGDYGALQSN------GHPLSHAHQWITAPPPQGPPGHPGAHH--DPHSDE
       :.:.     :.. . :::.      ..: . ..  :.: : :  :   .. .  :  : :
CCDS12 QNLLTQLPQQSQANLLQSQPSITLTSQPATPTRT-IAATPIQTLPQSQSTPKRIDTPSLE
          250       260       270        280       290       300   

           90       100       110       120       130       140    
pF1KB4 DTPTSDDLEQFAKQFKQRRIKLGFTQADVGLALGTLYGNVFSQTTICRFEALQLSFKNMC
       .    ..:::::: ::::::::::::.:::::.: :::: :::::: :::::.:::::::
CCDS12 EPSDLEELEQFAKTFKQRRIKLGFTQGDVGLAMGKLYGNDFSQTTISRFEALNLSFKNMC
           310       320       330       340       350       360   

          150            160       170         180       190       
pF1KB4 KLKPLLNKWLEEA-----DSSSGSPTSIDKIAAQG--RKRKKRTSIEVSVKGALESHFLK
       ::::::.:::..:     ::: .::..... . .:  :.::::::::.... :::. ::.
CCDS12 KLKPLLEKWLNDAENLSSDSSLSSPSALNSPGIEGLSRRRKKRTSIETNIRVALEKSFLE
           370       380       390       400       410       420   

       200       210       220       230         240       250     
pF1KB4 CPKPSAQEITSLADSLQLEKEVVRVWFCNRRQKEKRMTPP--GGTLPGAEDVYGGSRDTP
         ::...::: .::.:..::::.:::::::::::::..::  :::               
CCDS12 NQKPTSEEITMIADQLNMEKEVIRVWFCNRRQKEKRINPPSSGGTSSSPIKAIFPSPTSL
           430       440       450       460       470       480   

         260                                                       
pF1KB4 PHHGVQTPVQ                                                  
                                                                   
CCDS12 VATTPSLVTSSAATTLTVSPVLPLTSAAVTNLSVTGTSDTTSNNTATVISTAPPASSAVT
           490       500       510       520       530       540   

>>CCDS34391.1 POU5F1 gene_id:5460|Hs108|chr6              (360 aa)
 initn: 703 init1: 617 opt: 635  Z-score: 524.4  bits: 105.2 E(32554): 6.8e-23
Smith-Waterman score: 635; 52.7% identity (75.6% similar) in 205 aa overlap (32-233:88-287)

              10        20        30        40         50        60
pF1KB4 ATAASNHYSLLTSSASIVHAEPPGGMQQGAGGYREAQSLVQGDYGA-LQSNGHPLSHAHQ
                                     :: . .:   .:. :. ..::.   :   .
CCDS34 WGIPPCPPPYEFCGGMAYCGPQVGVGLVPQGGLETSQP--EGEAGVGVESNSDGASP--E
        60        70        80        90         100       110     

               70        80         90       100       110         
pF1KB4 WITAPPPQGPPGHPGAHHDPHSDEDTPT-SDDLEQFAKQFKQRRIKLGFTQADVGLALGT
         :. :      .   ...:. ..:  . . .:::::: .::.:: ::.:::::::.::.
CCDS34 PCTVTPGAVKLEKEKLEQNPEESQDIKALQKELEQFAKLLKQKRITLGYTQADVGLTLGV
           120       130       140       150       160       170   

     120       130       140       150       160        170        
pF1KB4 LYGNVFSQTTICRFEALQLSFKNMCKLKPLLNKWLEEADSSSG-SPTSIDKIAAQGRKRK
       :.:.:::::::::::::::::::::::.:::.::.::::.. . .     .  .:.::::
CCDS34 LFGKVFSQTTICRFEALQLSFKNMCKLRPLLQKWVEEADNNENLQEICKAETLVQARKRK
           180       190       200       210       220       230   

      180       190       200       210       220       230        
pF1KB4 KRTSIEVSVKGALESHFLKCPKPSAQEITSLADSLQLEKEVVRVWFCNRRQKEKRMTPPG
        :::::  :.: ::. ::.::::. :.:. .:..: :::.:::::::::::: ::     
CCDS34 -RTSIENRVRGNLENLFLQCPKPTLQQISHIAQQLGLEKDVVRVWFCNRRQKGKRSSSDY
            240       250       260       270       280       290  

      240       250       260                                      
pF1KB4 GTLPGAEDVYGGSRDTPPHHGVQTPVQ                                 
                                                                   
CCDS34 AQREDFEAAGSPFSGGPVSFPLAPGPHFGTPGYGSPHFTALYSSVPFPEGEAFPPVSVTT
            300       310       320       330       340       350  




265 residues in 1 query   sequences
18511270 residues in 32554 library sequences
 Tcomplib [36.3.4 Apr, 2011] (8 proc)
 start: Thu Nov  3 21:38:18 2016 done: Thu Nov  3 21:38:18 2016
 Total Scan time:  2.850 Total Display time:  0.030

Function used was FASTA [36.3.4 Apr, 2011]
Inquiries or Suggestions ?
Send a message to flexiclone AT kazusagt.com