Result of FASTA (ccds) for pF1KSDA1734
FASTA searches a protein or DNA sequence data bank 36.3.4 Apr, 2011
Please cite:
W.R. Pearson & D.J. Lipman PNAS (1988) 85:2444-2448

Query: pF1KSDA1734, 1292 aa
  1>>>pF1KSDA1734 1292 - 1292 aa - 1292 aa
Library: human.CCDS.faa
  18511270 residues in 32554 sequences

Statistics:  Expectation_n fit: rho(ln(x))= 8.7985+/-0.00101; mu= 9.8011+/- 0.062
 mean_var=248.3605+/-49.786, 0's: 0 Z-trim(113.4): 31  B-trim: 565 in 1/55
 Lambda= 0.081383
 statistics sampled from 13984 (14006) to 13984 sequences
Algorithm: FASTA (3.7 Nov 2010) [optimized]
Parameters: BL50 matrix (15:-5), open/ext: -10/-2
 ktup: 2, E-join: 1 (0.735), E-opt: 0.2 (0.43), width:  16
 Scan time:  3.140

The best scores are:                                      opt bits E(32554)
CCDS32742.1 UBE2O gene_id:63893|Hs108|chr17        (1292) 8714 1037.3       0
CCDS33175.2 BIRC6 gene_id:57448|Hs108|chr2         (4857)  504 73.9 1.2e-11


>>CCDS32742.1 UBE2O gene_id:63893|Hs108|chr17             (1292 aa)
 initn: 8714 init1: 8714 opt: 8714  Z-score: 5539.7  bits: 1037.3 E(32554):    0
Smith-Waterman score: 8714; 99.8% identity (99.9% similar) in 1292 aa overlap (1-1292:1-1292)

               10        20        30        40        50        60
pF1KSD MADPAAPTPAAPAPAQAPAPAPEAVPAPAAAPVPAPAPASDSASGPSSDFGPEAGSQRLL
       ::::::::::::::::::::::::::::::::::::::::::::::::: ::::::::::
CCDS32 MADPAAPTPAAPAPAQAPAPAPEAVPAPAAAPVPAPAPASDSASGPSSDSGPEAGSQRLL
               10        20        30        40        50        60

               70        80        90       100       110       120
pF1KSD FSHDLVSGRYRGSVHFGLVRLIHGEDSDSEGEEEGRGSSGCSEAGGAGHEEGRASPLRRG
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS32 FSHDLVSGRYRGSVHFGLVRLIHGEDSDSEGEEEGRGSSGCSEAGGAGHEEGRASPLRRG
               70        80        90       100       110       120

              130       140       150       160       170       180
pF1KSD YVRVQWYPEGVKQHVKETKLKLEDRSVVPRDVVRHMRSTDSQCGTVIDVNIDCAVKLIGT
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS32 YVRVQWYPEGVKQHVKETKLKLEDRSVVPRDVVRHMRSTDSQCGTVIDVNIDCAVKLIGT
              130       140       150       160       170       180

              190       200       210       220       230       240
pF1KSD NCIIYPVNSKDLQHIWPFMYGDYIAYDCWLGKVYDLKNQIILKLSNGARCSMNTEDGAKL
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS32 NCIIYPVNSKDLQHIWPFMYGDYIAYDCWLGKVYDLKNQIILKLSNGARCSMNTEDGAKL
              190       200       210       220       230       240

              250       260       270       280       290       300
pF1KSD YDVCPHVSDSGLFFDDSYGFYPGQVLIGPAKIFSSVQWLSGVKPVLSTKSKFRVVVEEVQ
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS32 YDVCPHVSDSGLFFDDSYGFYPGQVLIGPAKIFSSVQWLSGVKPVLSTKSKFRVVVEEVQ
              250       260       270       280       290       300

              310       320       330       340       350       360
pF1KSD VVELKVTWITKSFCPGGTDSVSPPPSVITQENLGRVKRLGCFDHAQRQLGERCLYVFPAK
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS32 VVELKVTWITKSFCPGGTDSVSPPPSVITQENLGRVKRLGCFDHAQRQLGERCLYVFPAK
              310       320       330       340       350       360

              370       380       390       400       410       420
pF1KSD VEPAKIAWECPEKNCAQGEGSMAKKVKRLLKKQVVRIMSCSPDTQCSRDHSMEDPDKKGE
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS32 VEPAKIAWECPEKNCAQGEGSMAKKVKRLLKKQVVRIMSCSPDTQCSRDHSMEDPDKKGE
              370       380       390       400       410       420

              430       440       450       460       470       480
pF1KSD SKTKSEAESASPEETPDGSASPVEMQDEGAEEPHEAGEQLPPFLLKEGRDDRLHSAEQDA
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS32 SKTKSEAESASPEETPDGSASPVEMQDEGAEEPHEAGEQLPPFLLKEGRDDRLHSAEQDA
              430       440       450       460       470       480

              490       500       510       520       530       540
pF1KSD DDEAADDTDDTSSVTSSASSTTSSQSGSGTSRKKSIPLSIKNLKRKHKRKKNKITRDFKP
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS32 DDEAADDTDDTSSVTSSASSTTSSQSGSGTSRKKSIPLSIKNLKRKHKRKKNKITRDFKP
              490       500       510       520       530       540

              550       560       570       580       590       600
pF1KSD GDRVAVEVVTTMTSADVMWQDGSVECNIRSNDLFPVHHLDNNEFCPGDFVVDKRVQSCPD
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS32 GDRVAVEVVTTMTSADVMWQDGSVECNIRSNDLFPVHHLDNNEFCPGDFVVDKRVQSCPD
              550       560       570       580       590       600

              610       620       630       640       650       660
pF1KSD PAVYGVVQSGDHIGRTCMVKWFKLRPSGDDVELIGEEEDVSVYDIADHPDFRFRTTDIVI
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS32 PAVYGVVQSGDHIGRTCMVKWFKLRPSGDDVELIGEEEDVSVYDIADHPDFRFRTTDIVI
              610       620       630       640       650       660

              670       680       690       700       710       720
pF1KSD RIGNTEDGAPHKEDEPSVGQVARVDVSSKVEVVWADNSKTIILPQHLYNIESEIEESDYD
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS32 RIGNTEDGAPHKEDEPSVGQVARVDVSSKVEVVWADNSKTIILPQHLYNIESEIEESDYD
              670       680       690       700       710       720

              730       740       750       760       770       780
pF1KSD SVEGSTSGASSDEWEDDSDSWETDNGLVEDEHPKIEEPPIPPLEQPVAPEDKGVVISEEA
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS32 SVEGSTSGASSDEWEDDSDSWETDNGLVEDEHPKIEEPPIPPLEQPVAPEDKGVVISEEA
              730       740       750       760       770       780

              790       800       810       820       830       840
pF1KSD ATAAVQGAVAMAAPMAGLMEKAGKDGPPKSFRELKEAIKILESLKNMTVEQLLTGSPTSP
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS32 ATAAVQGAVAMAAPMAGLMEKAGKDGPPKSFRELKEAIKILESLKNMTVEQLLTGSPTSP
              790       800       810       820       830       840

              850       860       870       880       890       900
pF1KSD TVEPEKPTREKKFLDDIKKLQENLKKTLDNVAIVEEEKMEAVPDVERKEDKPEGQSPVKA
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS32 TVEPEKPTREKKFLDDIKKLQENLKKTLDNVAIVEEEKMEAVPDVERKEDKPEGQSPVKA
              850       860       870       880       890       900

              910       920       930       940       950       960
pF1KSD EWPSETPVLCQQCGGKPGVTFTSAKGEVFSVLEFAPSNHSFKKIEFQPPEAKKFFSTVRK
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS32 EWPSETPVLCQQCGGKPGVTFTSAKGEVFSVLEFAPSNHSFKKIEFQPPEAKKFFSTVRK
              910       920       930       940       950       960

              970       980       990      1000      1010      1020
pF1KSD EMALLATSLPEGIMVKTFEDRMDLFSALIKGPTRTPYEDGLYLFDIQLPNIYPAVPPHFC
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS32 EMALLATSLPEGIMVKTFEDRMDLFSALIKGPTRTPYEDGLYLFDIQLPNIYPAVPPHFC
              970       980       990      1000      1010      1020

             1030      1040      1050      1060      1070      1080
pF1KSD YLSQCSGRLNPNLYDNGKVCVSLLGTWIGKGTERWTSKSSLLQVLISIQGLILVNEPYYN
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS32 YLSQCSGRLNPNLYDNGKVCVSLLGTWIGKGTERWTSKSSLLQVLISIQGLILVNEPYYN
             1030      1040      1050      1060      1070      1080

             1090      1100      1110      1120      1130      1140
pF1KSD EAGFDSDRGLQEGYENSRCYNEMALIRVVQSMTQLVRRPPEVFEQEIRQHFSTGGWRLVN
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS32 EAGFDSDRGLQEGYENSRCYNEMALIRVVQSMTQLVRRPPEVFEQEIRQHFSTGGWRLVN
             1090      1100      1110      1120      1130      1140

             1150      1160      1170      1180      1190      1200
pF1KSD RIESWLETHALLEKAQALPNGVPKASSSPEPPAVAELSDSGQQEPEDGGPAPGEASQGSD
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS32 RIESWLETHALLEKAQALPNGVPKASSSPEPPAVAELSDSGQQEPEDGGPAPGEASQGSD
             1150      1160      1170      1180      1190      1200

             1210      1220      1230      1240      1250      1260
pF1KSD SEGGAQSLASASRDHTDQTSETAPDASVPPSVKPKKRRKSYRSFLPEKSGYPDIGFPLFP
       ::::::.:::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS32 SEGGAQGLASASRDHTDQTSETAPDASVPPSVKPKKRRKSYRSFLPEKSGYPDIGFPLFP
             1210      1220      1230      1240      1250      1260

             1270      1280      1290  
pF1KSD LSKGFIKSIRGVLTQFRAALLEAGMPECTEDK
       ::::::::::::::::::::::::::::::::
CCDS32 LSKGFIKSIRGVLTQFRAALLEAGMPECTEDK
             1270      1280      1290  

>>CCDS33175.2 BIRC6 gene_id:57448|Hs108|chr2              (4857 aa)
 initn: 426 init1: 165 opt: 504  Z-score: 322.8  bits: 73.9 E(32554): 1.2e-11
Smith-Waterman score: 506; 31.8% identity (60.9% similar) in 330 aa overlap (830-1146:4456-4774)

     800       810       820       830        840       850        
pF1KSD EKAGKDGPPKSFRELKEAIKILESLKNMTVEQLLTG-SPTSPTVEPEKPTREKKFLDDIK
                                     :.. :: .: .   :::  :    .. ::.
CCDS33 QSECQTSVGTLLAKMKTCVDTYTNRLRSKRENVKTGVKPDASDQEPEGLTL---LVPDIQ
        4430      4440      4450      4460      4470         4480  

      860       870       880       890        900       910       
pF1KSD KLQENLKKTLDNVAIVEEEKMEAVPDVERKED-KPEGQSPVKAEWPSETPVLCQQCGGKP
       :  : .  .  ..  ...::   . .  .:   ::.  : .:.   . . :. .      
CCDS33 KTAEIVYAATTSLRQANQEK--KLGEYSKKAAMKPKPLSVLKSLEEKYVAVMKKLQFD--
           4490      4500        4510      4520      4530          

       920       930       940       950         960       970     
pF1KSD GVTFTSAKGEVFSVLEFAPSNHSFKKIEFQPPEAKKFFSTVR--KEMALLATSLP----E
         ::  .. .  . : :  . : ..... .  .:..   . :  .: . :.::::     
CCDS33 --TFEMVSEDEDGKLGFKVNYHYMSQVK-NANDANSAARARRLAQEAVTLSTSLPLSSSS
       4540      4550      4560       4570      4580      4590     

             980       990      1000      1010      1020           
pF1KSD GIMVKTFEDRMDLFSALIKGPTRTPYEDGLYLFDIQLPNIYPAVPPHFCYLSQCSG---R
       ...:.  :.:.:....:: ::. ::: .: . ::. .:. ::. :: .  :   .:   :
CCDS33 SVFVRCDEERLDIMKVLITGPADTPYANGCFEFDVYFPQDYPSSPP-LVNLETTGGHSVR
        4600      4610      4620      4630      4640       4650    

     1030      1040      1050       1060      1070      1080       
pF1KSD LNPNLYDNGKVCVSLLGTWIGKGTERWTSK-SSLLQVLISIQGLILVNEPYYNEAGFDSD
       .:::::..::::.:.:.:: :.  :.:. . ::.::::.:.:.:::: :::.:: :.. .
CCDS33 FNPNLYNDGKVCLSILNTWHGRPEEKWNPQTSSFLQVLVSVQSLILVAEPYFNEPGYERS
         4660      4670      4680      4690      4700      4710    

      1090      1100       1110      1120      1130      1140      
pF1KSD RGLQEGYENSRCYN-EMALIRVVQSMTQLVRRPPEVFEQEIRQHFSTGGWRLVNRIESWL
       ::   : ..:: :. ..    :  .: . .: :   :.. :..::     ... . : :.
CCDS33 RGTPSGTQSSREYDGNIRQATVKWAMLEQIRNPSPCFKEVIHKHFYLKRVEIMAQCEEWI
         4720      4730      4740      4750      4760      4770    

       1150      1160      1170      1180      1190      1200      
pF1KSD ETHALLEKAQALPNGVPKASSSPEPPAVAELSDSGQQEPEDGGPAPGEASQGSDSEGGAQ
                                                                   
CCDS33 ADIQQYSSDKRVGRTMSHHAAALKRHTAQLREELLKLPCPEGLDPDTDDAPEVCRATTGA
         4780      4790      4800      4810      4820      4830    




1292 residues in 1 query   sequences
18511270 residues in 32554 library sequences
 Tcomplib [36.3.4 Apr, 2011] (8 proc)
 start: Thu Nov  3 19:08:51 2016 done: Thu Nov  3 19:08:52 2016
 Total Scan time:  3.140 Total Display time:  0.030

Function used was FASTA [36.3.4 Apr, 2011]
Inquiries or Suggestions ?
Send a message to flexiclone AT kazusagt.com