(Circular) (Six-base) MAPSORT of: pF1KB9267.seq Check: 1672 from: 1 to: 3524 pF1KB9267 3524 bp With 182 enzymes: SgfI * June 20, 2008 10:30 .. AccI GT'mk_AC Cuts at: 562 562 Size: 3524 Acc65I G'GTAC_C Cuts at: 540 540 Size: 3524 AclI AA'CG_TT Cuts at: 3364 3364 Size: 3524 AcuI CTGAAGnnnnnnnnnnnnnn_nn' Cuts at: 262 316 1349 1781 2134 2796 262 Size: 54 1033 432 353 662 990 Fragments arranged by size: 1033 990 662 432 353 54 AflIII A'CryG_T Cuts at: 876 2676 2957 876 Size: 1800 281 1443 Fragments arranged by size: 1800 1443 281 AlwNI CAG_nnn'CTG Cuts at: 829 2267 829 Size: 1438 2086 ApaLI G'TGCA_C Cuts at: 2362 2362 Size: 3524 ApoI r'AATT_y Cuts at: 251 528 2877 3133 251 Size: 277 2349 256 642 Fragments arranged by size: 2349 642 277 256 AseI AT'TA_AT Cuts at: 20 20 Size: 3524 AsiSI GCG_AT'CGC Cuts at: 104 104 Size: 3524 AvaI C'yCGr_G Cuts at: 481 544 481 Size: 63 3461 BamHI G'GATC_C Cuts at: 549 549 Size: 3524 BanI G'GyrC_C Cuts at: 540 954 1202 1237 540 Size: 414 248 35 2827 Fragments arranged by size: 2827 414 248 35 BanII G_rGCy'C Cuts at: 538 1568 538 Size: 1030 2494 BbeI G_GCGC'C Cuts at: 958 1206 958 Size: 248 3276 BbvCI CC'TCA_GC Cuts at: 160 160 Size: 3524 BciVI GTATCCnnnnn_n' Cuts at: 1422 2478 3524 1422 Size: 1056 1046 1422 Fragments arranged by size: 1422 1056 1046 BclI T'GATC_A Cuts at: 1044 1044 Size: 3524 BglII A'GATC_T Cuts at: 1039 3076 1039 Size: 2037 1487 BlpI GC'TnA_GC Cuts at: 636 636 Size: 3524 Bme1580I G_kGCm'C Cuts at: 276 1149 1242 2366 276 Size: 873 93 1124 1434 Fragments arranged by size: 1434 1124 873 93 BmrI ACTGGGnnnn_n' Cuts at: 736 817 1152 3296 736 Size: 81 335 2144 964 Fragments arranged by size: 2144 964 335 81 BplI GAGnnnnnCTCnnnnnnnn_nnnnn' Cuts at: 1891 1891 Size: 3524 BpmI CTGGAGnnnnnnnnnnnnnn_nn' Cuts at: 376 376 Size: 3524 Bpu10I CC'TnA_GC Cuts at: 160 184 160 Size: 24 3500 BpuEI CTTGAGnnnnnnnnnnnnnn_nn' Cuts at: 700 1579 2293 2591 700 Size: 879 714 298 1633 Fragments arranged by size: 1633 879 714 298 BsaI GGTCTCn'nnnn_ Cuts at: 3228 3228 Size: 3524 BsaAI yAC'GTr Cuts at: 877 877 Size: 3524 BsaBI GATnn'nnATC Cuts at: 6 1038 3075 6 Size: 1032 2037 455 Fragments arranged by size: 2037 1032 455 BsaHI Gr'CG_yC Cuts at: 955 1203 1905 3401 955 Size: 248 702 1496 1078 Fragments arranged by size: 1496 1078 702 248 BsaWI w'CCGG_w Cuts at: 713 1234 1912 2323 2470 2744 713 Size: 521 678 411 147 274 1493 Fragments arranged by size: 1493 678 521 411 274 147 BseYI C'CCAG_C Cuts at: 949 1707 2372 2780 949 Size: 758 665 408 1693 Fragments arranged by size: 1693 758 665 408 BsiEI CG_ry'CG Cuts at: 104 1066 1112 2342 104 Size: 962 46 1230 1286 Fragments arranged by size: 1286 1230 962 46 BsiHKAI G_wGCw'C Cuts at: 538 1316 1506 2366 538 Size: 778 190 860 1696 Fragments arranged by size: 1696 860 778 190 Bsp1286I G_dGCh'C Cuts at: 276 538 1149 1242 1316 1506 1568 2366 276 Size: 262 611 93 74 190 62 798 1434 Fragments arranged by size: 1434 798 611 262 190 93 74 62 BspHI T'CATG_A Cuts at: 1956 1956 Size: 3524 BspMI ACCTGCnnnn'nnnn_ Cuts at: 574 788 1090 1471 574 Size: 214 302 381 2627 Fragments arranged by size: 2627 381 302 214 BsrBI CCG'CTC Cuts at: 50 1816 1870 3354 3519 50 Size: 1766 54 1484 165 55 Fragments arranged by size: 1766 1484 165 55 54 BsrDI GCAATG_nn' Cuts at: 1436 1436 Size: 3524 BsrFI r'CCGG_y Cuts at: 1522 1703 1522 Size: 181 3343 BssSI C'ACGA_G Cuts at: 139 1795 2503 139 Size: 1656 708 1160 Fragments arranged by size: 1656 1160 708 BstAPI GCAn_nnn'nTGC Cuts at: 901 901 Size: 3524 BstBI TT'CG_AA Cuts at: 212 1885 212 Size: 1673 1851 BstXI CCAn_nnnn'nTGG Cuts at: 123 123 Size: 3524 BstYI r'GATC_y Cuts at: 1 549 1016 1039 1374 1620 1926 1938 2024 Size: 548 467 23 335 246 306 12 86 Cuts at: 2024 3076 1 Size: 1052 449 Fragments arranged by size: 1052 548 467 449 335 306 246 86 23 12 BtgZI GCGATGnnnnnnnnnn'nnnn_ Cuts at: 1474 1655 1818 1474 Size: 181 163 3180 Fragments arranged by size: 3180 181 163 BtsI GCAGTG_nn' Cuts at: 767 767 Size: 3524 DraI TTT'AAA Cuts at: 368 523 368 Size: 155 3369 DrdI GACnn_nn'nnGTC Cuts at: 1230 2574 1230 Size: 1344 2180 EaeI y'GGCC_r Cuts at: 1109 1283 1674 1701 3046 1109 Size: 174 391 27 1345 1587 Fragments arranged by size: 1587 1345 391 174 27 EagI C'GGCC_G Cuts at: 1109 1109 Size: 3524 EarI CTCTTCn'nnn_ Cuts at: 431 1547 1757 431 Size: 1116 210 2198 Fragments arranged by size: 2198 1116 210 EciI GGCGGAnnnnnnnnn_nn' Cuts at: 1732 2474 2620 3334 1732 Size: 742 146 714 1922 Fragments arranged by size: 1922 742 714 146 EcoICRI GAG'CTC Cuts at: 536 536 Size: 3524 Eco57MI CTGrAGnnnnnnnnnnnnnn_nn' Cuts at: 262 316 376 1349 1781 2134 2796 262 Size: 54 60 973 432 353 662 990 Fragments arranged by size: 990 973 662 432 353 60 54 EcoO109I rG'GnC_Cy Cuts at: 663 663 Size: 3524 EcoRI G'AATT_C Cuts at: 528 528 Size: 3524 FalI AAGnnnnnCTTnnnnnnnn_nnnnn' Cuts at: 1543 1543 Size: 3524 FspI TGC'GCA Cuts at: 1305 1305 Size: 3524 HaeII r_GCGC'y Cuts at: 515 958 1206 2436 3207 515 Size: 443 248 1230 771 832 Fragments arranged by size: 1230 832 771 443 248 Hin4I GAynnnnnvTCnnnnnnnn_nnnnn' Cuts at: 221 253 1366 1396 1398 1428 221 Size: 32 1113 30 2 30 2317 Fragments arranged by size: 2317 1113 32 30 30 2 HincII GTy'rAC Cuts at: 563 563 Size: 3524 HindIII A'AGCT_T Cuts at: 362 362 Size: 3524 KasI G'GCGC_C Cuts at: 954 1202 954 Size: 248 3276 KpnI G_GTAC'C Cuts at: 544 544 Size: 3524 MluI A'CGCG_T Cuts at: 2957 2957 Size: 3524 MmeI TCCrACnnnnnnnnnnnnnnnnnn_nn' Cuts at: 2283 2467 2283 Size: 184 3340 MscI TGG'CCA Cuts at: 1285 1285 Size: 3524 MslI CAynn'nnrTG Cuts at: 1513 1640 1513 Size: 127 3397 MspA1I CmG'CkG Cuts at: 635 949 1309 2093 2338 635 Size: 314 360 784 245 1821 Fragments arranged by size: 1821 784 360 314 245 NaeI GCC'GGC Cuts at: 1705 1705 Size: 3524 NarI GG'CG_CC Cuts at: 955 1203 955 Size: 248 3276 NgoMIV G'CCGG_C Cuts at: 1703 1703 Size: 3524 NspI r_CATG'y Cuts at: 577 1077 2680 577 Size: 500 1603 1421 Fragments arranged by size: 1603 1421 500 PciI A'CATG_T Cuts at: 2676 2676 Size: 3524 PmeI GTTT'AAAC Cuts at: 523 523 Size: 3524 PpiI GAACnnnnnCTCnnnnnnnn_nnnnn' Cuts at: 1970 2002 1970 Size: 32 3492 PstI C_TGCA'G Cuts at: 571 1256 571 Size: 685 2839 PvuI CG_AT'CG Cuts at: 104 104 Size: 3524 PvuII CAG'CTG Cuts at: 949 1309 949 Size: 360 3164 RsrII CG'GwC_CG Cuts at: 1719 1719 Size: 3524 SacI G_AGCT'C Cuts at: 538 538 Size: 3524 SalI G'TCGA_C Cuts at: 561 561 Size: 3524 SapI GCTCTTCn'nnn_ Cuts at: 1547 1757 1547 Size: 210 3314 SbfI CC_TGCA'GG Cuts at: 571 571 Size: 3524 ScaI AGT'ACT Cuts at: 3041 3041 Size: 3524 SfcI C'TryA_G Cuts at: 33 189 567 1252 2220 2411 33 Size: 156 378 685 968 191 1146 Fragments arranged by size: 1146 968 685 378 191 156 SfoI GGC'GCC Cuts at: 956 1204 956 Size: 248 3276 SgfI GCG_AT'CGC Cuts at: 104 104 Size: 3524 SmaI CCC'GGG Cuts at: 546 546 Size: 3524 SmlI C'TyrA_G Cuts at: 481 679 1594 2308 2570 481 Size: 198 915 714 262 1435 Fragments arranged by size: 1435 915 714 262 198 SpeI A'CTAG_T Cuts at: 67 465 67 Size: 398 3126 SphI G_CATG'C Cuts at: 577 1077 577 Size: 500 3024 StyI C'CwwG_G Cuts at: 116 658 1012 116 Size: 542 354 2628 Fragments arranged by size: 2628 542 354 TaqII GACCGAnnnnnnnnn_nn' Cuts at: 1107 1240 1699 1908 1107 Size: 133 459 209 2723 Fragments arranged by size: 2723 459 209 133 TatI w'GTAC_w Cuts at: 3039 3039 Size: 3524 TstI CACnnnnnnTCCnnnnnnn_nnnnn' Cuts at: 3041 3073 3041 Size: 32 3492 Tth111I GACn'n_nGTC Cuts at: 1321 1321 Size: 3524 XbaI T'CTAG_A Cuts at: 555 555 Size: 3524 XcmI CCAnnnn_n'nnnnTGG Cuts at: 1019 1019 Size: 3524 XhoI C'TCGA_G Cuts at: 481 481 Size: 3524 XmaI C'CCGG_G Cuts at: 544 544 Size: 3524 Enzymes that do cut: AccI Acc65I AclI AcuI AflIII AlwNI ApaLI ApoI AseI AsiSI AvaI BamHI BanI BanII BbeI BbvCI BciVI BclI BglII BlpI Bme1580I BmrI BplI BpmI Bpu10I BpuEI BsaI BsaAI BsaBI BsaHI BsaWI BseYI BsiEI BsiHKAI Bsp1286I BspHI BspMI BsrBI BsrDI BsrFI BssSI BstAPI BstBI BstXI BstYI BtgZI BtsI DraI DrdI EaeI EagI EarI EciI EcoICRI Eco57MI EcoO109I EcoRI FalI FspI HaeII Hin4I HincII HindIII KasI KpnI MluI MmeI MscI MslI MspA1I NaeI NarI NgoMIV NspI PciI PmeI PpiI PstI PvuI PvuII RsrII SacI SalI SapI SbfI ScaI SfcI SfoI SgfI SmaI SmlI SpeI SphI StyI TaqII TatI TstI Tth111I XbaI XcmI XhoI XmaI Enzymes that do not cut: AarI AatII AfeI AflII AgeI AhdI AleI AlfI AloI ApaI AscI AvrII BaeI BbsI BcgI BfrBI BglI BmgBI BmtI BsaXI BseRI BsgI BsiWI BsmI BsmBI BspEI BsrGI BssHII BstEII BstZ17I Bsu36I BtgI ClaI CspCI DraIII EcoNI EcoRV FseI FspAI HpaI MfeI NcoI NdeI NheI NotI NruI NsiI PacI PasI PflMI PfoI PmlI PpuMI PshAI PsiI PspOMI PspXI PsrI SacII SanDI SexAI SfiI SgrAI SnaBI SrfI SspI StuI SwaI XmnI ZraI