Result of FASTA (omim) for pF1KB5363
FASTA searches a protein or DNA sequence data bank 36.3.4 Apr, 2011
Please cite:
W.R. Pearson & D.J. Lipman PNAS (1988) 85:2444-2448

Query: pF1KB5363, 154 aa
  1>>>pF1KB5363 154 - 154 aa - 154 aa
Library: /omim/omim.rfq.tfa
  60827320 residues in 85289 sequences

Statistics:  Expectation_n fit: rho(ln(x))= 6.9023+/-0.000264; mu= 6.3857+/- 0.017
 mean_var=126.5075+/-25.638, 0's: 0 Z-trim(123.7): 123  B-trim: 2209 in 2/54
 Lambda= 0.114029
 statistics sampled from 43952 (44097) to 43952 sequences
Algorithm: FASTA (3.7 Nov 2010) [optimized]
Parameters: BL50 matrix (15:-5), open/ext: -10/-2
 ktup: 2, E-join: 1 (0.838), E-opt: 0.2 (0.517), width:  16
 Scan time:  5.940

The best scores are:                                      opt bits E(85289)
NP_055187 (OMIM: 612598) RING finger protein 11 [H ( 154) 1097 190.0 1.3e-48
NP_898864 (OMIM: 133239,604242) E3 ubiquitin-prote ( 685)  207 44.1 0.00049
NP_898865 (OMIM: 133239,604242) E3 ubiquitin-prote ( 685)  207 44.1 0.00049
XP_005266542 (OMIM: 133239,604242) PREDICTED: E3 u ( 685)  207 44.1 0.00049
XP_011533479 (OMIM: 133239,604242) PREDICTED: E3 u ( 685)  207 44.1 0.00049
NP_005968 (OMIM: 133239,604242) E3 ubiquitin-prote ( 685)  207 44.1 0.00049
XP_005266543 (OMIM: 133239,604242) PREDICTED: E3 u ( 685)  207 44.1 0.00049
XP_016869786 (OMIM: 612488) PREDICTED: E3 ubiquiti ( 402)  200 42.7 0.00072
XP_016869785 (OMIM: 612488) PREDICTED: E3 ubiquiti ( 402)  200 42.7 0.00072
XP_006716784 (OMIM: 612488) PREDICTED: E3 ubiquiti ( 432)  200 42.8 0.00076
XP_005251425 (OMIM: 612488) PREDICTED: E3 ubiquiti ( 432)  200 42.8 0.00076
NP_919309 (OMIM: 612488) E3 ubiquitin-protein liga ( 432)  200 42.8 0.00076
XP_011516014 (OMIM: 612488) PREDICTED: E3 ubiquiti ( 432)  200 42.8 0.00076
NP_919311 (OMIM: 612488) E3 ubiquitin-protein liga ( 432)  200 42.8 0.00076
XP_005251424 (OMIM: 612488) PREDICTED: E3 ubiquiti ( 432)  200 42.8 0.00076
XP_016869784 (OMIM: 612488) PREDICTED: E3 ubiquiti ( 432)  200 42.8 0.00076
NP_919313 (OMIM: 612488) E3 ubiquitin-protein liga ( 432)  200 42.8 0.00076
XP_011516015 (OMIM: 612488) PREDICTED: E3 ubiquiti ( 432)  200 42.8 0.00076
XP_005251423 (OMIM: 612488) PREDICTED: E3 ubiquiti ( 432)  200 42.8 0.00076
XP_016869783 (OMIM: 612488) PREDICTED: E3 ubiquiti ( 444)  200 42.8 0.00077
NP_919310 (OMIM: 612488) E3 ubiquitin-protein liga ( 465)  200 42.8  0.0008
XP_016879917 (OMIM: 610431) PREDICTED: E3 ubiquiti ( 227)  195 41.7 0.00081
NP_073618 (OMIM: 612488) E3 ubiquitin-protein liga ( 515)  200 42.8 0.00087
NP_001257458 (OMIM: 605840) E3 ubiquitin-protein l ( 985)  200 43.0  0.0015
XP_016877832 (OMIM: 605840) PREDICTED: E3 ubiquiti ( 985)  200 43.0  0.0015
XP_016877831 (OMIM: 605840) PREDICTED: E3 ubiquiti ( 986)  200 43.0  0.0015
NP_060080 (OMIM: 605840) E3 ubiquitin-protein liga ( 986)  200 43.0  0.0015
XP_016877829 (OMIM: 605840) PREDICTED: E3 ubiquiti ( 993)  200 43.0  0.0015
XP_016877830 (OMIM: 605840) PREDICTED: E3 ubiquiti ( 993)  200 43.0  0.0015
XP_016877828 (OMIM: 605840) PREDICTED: E3 ubiquiti ( 994)  200 43.0  0.0015
XP_016877827 (OMIM: 605840) PREDICTED: E3 ubiquiti ( 994)  200 43.0  0.0015
NP_001257459 (OMIM: 605840) E3 ubiquitin-protein l ( 994)  200 43.0  0.0015
NP_001257457 (OMIM: 605840) E3 ubiquitin-protein l ( 995)  200 43.0  0.0015
XP_016877826 (OMIM: 605840) PREDICTED: E3 ubiquiti (1002)  200 43.0  0.0015
XP_006720642 (OMIM: 605840) PREDICTED: E3 ubiquiti (1003)  200 43.0  0.0015
NP_001317260 (OMIM: 605840) E3 ubiquitin-protein l (1003)  200 43.0  0.0015
XP_016877825 (OMIM: 605840) PREDICTED: E3 ubiquiti (1009)  200 43.0  0.0015
XP_011520001 (OMIM: 605840) PREDICTED: E3 ubiquiti (1014)  200 43.0  0.0015
XP_006720638 (OMIM: 605840) PREDICTED: E3 ubiquiti (1026)  200 43.0  0.0015
XP_011519999 (OMIM: 605840) PREDICTED: E3 ubiquiti (1030)  200 43.0  0.0015
XP_011519998 (OMIM: 605840) PREDICTED: E3 ubiquiti (1031)  200 43.0  0.0015
XP_011519996 (OMIM: 605840) PREDICTED: E3 ubiquiti (1039)  200 43.0  0.0015
NP_001307294 (OMIM: 610431) E3 ubiquitin-protein l ( 315)  186 40.4  0.0029
NP_001307293 (OMIM: 610431) E3 ubiquitin-protein l ( 315)  186 40.4  0.0029
NP_001307292 (OMIM: 610431) E3 ubiquitin-protein l ( 315)  186 40.4  0.0029
NP_001307291 (OMIM: 610431) E3 ubiquitin-protein l ( 315)  186 40.4  0.0029
XP_016861150 (OMIM: 609247) PREDICTED: E3 ubiquiti ( 193)  182 39.6  0.0031
NP_001307289 (OMIM: 610431) E3 ubiquitin-protein l ( 350)  186 40.4  0.0032
NP_001307290 (OMIM: 610431) E3 ubiquitin-protein l ( 350)  186 40.4  0.0032
XP_016879916 (OMIM: 610431) PREDICTED: E3 ubiquiti ( 350)  186 40.4  0.0032


>>NP_055187 (OMIM: 612598) RING finger protein 11 [Homo   (154 aa)
 initn: 1097 init1: 1097 opt: 1097  Z-score: 993.9  bits: 190.0 E(85289): 1.3e-48
Smith-Waterman score: 1097; 100.0% identity (100.0% similar) in 154 aa overlap (1-154:1-154)

               10        20        30        40        50        60
pF1KB5 MGNCLKSPTSDDISLLHESQSDRASFGEGTEPDQEPPPPYQEQVPVPVYHPTPSQTRLAT
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_055 MGNCLKSPTSDDISLLHESQSDRASFGEGTEPDQEPPPPYQEQVPVPVYHPTPSQTRLAT
               10        20        30        40        50        60

               70        80        90       100       110       120
pF1KB5 QLTEEEQIRIAQRIGLIQHLPKGVYDPGRDGSEKKIRECVICMMDFVYGDPIRFLPCMHI
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_055 QLTEEEQIRIAQRIGLIQHLPKGVYDPGRDGSEKKIRECVICMMDFVYGDPIRFLPCMHI
               70        80        90       100       110       120

              130       140       150    
pF1KB5 YHLDCIDDWLMRSFTCPSCMEPVDAALLSSYETN
       ::::::::::::::::::::::::::::::::::
NP_055 YHLDCIDDWLMRSFTCPSCMEPVDAALLSSYETN
              130       140       150    

>>NP_898864 (OMIM: 133239,604242) E3 ubiquitin-protein l  (685 aa)
 initn: 207 init1: 207 opt: 207  Z-score: 193.4  bits: 44.1 E(85289): 0.00049
Smith-Waterman score: 207; 51.1% identity (73.3% similar) in 45 aa overlap (99-143:632-676)

       70        80        90       100       110       120        
pF1KB5 RIAQRIGLIQHLPKGVYDPGRDGSEKKIRECVICMMDFVYGDPIRFLPCMHIYHLDCIDD
                                     : .:. :.: :. .: ::::: .:. ::: 
NP_898 RIRGLTKEQIDNLSTRHYEHNSIDSELGKICSVCISDYVTGNKLRQLPCMHEFHIHCIDR
             610       620       630       640       650       660 

      130       140       150    
pF1KB5 WLMRSFTCPSCMEPVDAALLSSYETN
       :: .. ::: : .::           
NP_898 WLSENCTCPICRQPVLGSNIANNG  
             670       680       

>>NP_898865 (OMIM: 133239,604242) E3 ubiquitin-protein l  (685 aa)
 initn: 207 init1: 207 opt: 207  Z-score: 193.4  bits: 44.1 E(85289): 0.00049
Smith-Waterman score: 207; 51.1% identity (73.3% similar) in 45 aa overlap (99-143:632-676)

       70        80        90       100       110       120        
pF1KB5 RIAQRIGLIQHLPKGVYDPGRDGSEKKIRECVICMMDFVYGDPIRFLPCMHIYHLDCIDD
                                     : .:. :.: :. .: ::::: .:. ::: 
NP_898 RIRGLTKEQIDNLSTRHYEHNSIDSELGKICSVCISDYVTGNKLRQLPCMHEFHIHCIDR
             610       620       630       640       650       660 

      130       140       150    
pF1KB5 WLMRSFTCPSCMEPVDAALLSSYETN
       :: .. ::: : .::           
NP_898 WLSENCTCPICRQPVLGSNIANNG  
             670       680       

>>XP_005266542 (OMIM: 133239,604242) PREDICTED: E3 ubiqu  (685 aa)
 initn: 207 init1: 207 opt: 207  Z-score: 193.4  bits: 44.1 E(85289): 0.00049
Smith-Waterman score: 207; 51.1% identity (73.3% similar) in 45 aa overlap (99-143:632-676)

       70        80        90       100       110       120        
pF1KB5 RIAQRIGLIQHLPKGVYDPGRDGSEKKIRECVICMMDFVYGDPIRFLPCMHIYHLDCIDD
                                     : .:. :.: :. .: ::::: .:. ::: 
XP_005 RIRGLTKEQIDNLSTRHYEHNSIDSELGKICSVCISDYVTGNKLRQLPCMHEFHIHCIDR
             610       620       630       640       650       660 

      130       140       150    
pF1KB5 WLMRSFTCPSCMEPVDAALLSSYETN
       :: .. ::: : .::           
XP_005 WLSENCTCPICRQPVLGSNIANNG  
             670       680       

>>XP_011533479 (OMIM: 133239,604242) PREDICTED: E3 ubiqu  (685 aa)
 initn: 207 init1: 207 opt: 207  Z-score: 193.4  bits: 44.1 E(85289): 0.00049
Smith-Waterman score: 207; 51.1% identity (73.3% similar) in 45 aa overlap (99-143:632-676)

       70        80        90       100       110       120        
pF1KB5 RIAQRIGLIQHLPKGVYDPGRDGSEKKIRECVICMMDFVYGDPIRFLPCMHIYHLDCIDD
                                     : .:. :.: :. .: ::::: .:. ::: 
XP_011 RIRGLTKEQIDNLSTRHYEHNSIDSELGKICSVCISDYVTGNKLRQLPCMHEFHIHCIDR
             610       620       630       640       650       660 

      130       140       150    
pF1KB5 WLMRSFTCPSCMEPVDAALLSSYETN
       :: .. ::: : .::           
XP_011 WLSENCTCPICRQPVLGSNIANNG  
             670       680       

>>NP_005968 (OMIM: 133239,604242) E3 ubiquitin-protein l  (685 aa)
 initn: 207 init1: 207 opt: 207  Z-score: 193.4  bits: 44.1 E(85289): 0.00049
Smith-Waterman score: 207; 51.1% identity (73.3% similar) in 45 aa overlap (99-143:632-676)

       70        80        90       100       110       120        
pF1KB5 RIAQRIGLIQHLPKGVYDPGRDGSEKKIRECVICMMDFVYGDPIRFLPCMHIYHLDCIDD
                                     : .:. :.: :. .: ::::: .:. ::: 
NP_005 RIRGLTKEQIDNLSTRHYEHNSIDSELGKICSVCISDYVTGNKLRQLPCMHEFHIHCIDR
             610       620       630       640       650       660 

      130       140       150    
pF1KB5 WLMRSFTCPSCMEPVDAALLSSYETN
       :: .. ::: : .::           
NP_005 WLSENCTCPICRQPVLGSNIANNG  
             670       680       

>>XP_005266543 (OMIM: 133239,604242) PREDICTED: E3 ubiqu  (685 aa)
 initn: 207 init1: 207 opt: 207  Z-score: 193.4  bits: 44.1 E(85289): 0.00049
Smith-Waterman score: 207; 51.1% identity (73.3% similar) in 45 aa overlap (99-143:632-676)

       70        80        90       100       110       120        
pF1KB5 RIAQRIGLIQHLPKGVYDPGRDGSEKKIRECVICMMDFVYGDPIRFLPCMHIYHLDCIDD
                                     : .:. :.: :. .: ::::: .:. ::: 
XP_005 RIRGLTKEQIDNLSTRHYEHNSIDSELGKICSVCISDYVTGNKLRQLPCMHEFHIHCIDR
             610       620       630       640       650       660 

      130       140       150    
pF1KB5 WLMRSFTCPSCMEPVDAALLSSYETN
       :: .. ::: : .::           
XP_005 WLSENCTCPICRQPVLGSNIANNG  
             670       680       

>>XP_016869786 (OMIM: 612488) PREDICTED: E3 ubiquitin-pr  (402 aa)
 initn: 225 init1: 171 opt: 200  Z-score: 190.5  bits: 42.7 E(85289): 0.00072
Smith-Waterman score: 219; 33.9% identity (54.3% similar) in 127 aa overlap (36-139:267-390)

          10        20        30        40                 50      
pF1KB5 KSPTSDDISLLHESQSDRASFGEGTEPDQEPPPPYQEQV--------PVP-VYHPTPSQT
                                     :::::. ..        ::: .  :: :  
XP_016 HQEVSFGVPYPPFMPRRLTGRSRYRSQQPIPPPPYHPSLLPYVLSMLPVPPAVGPTFS-F
        240       250       260       270       280       290      

         60            70                  80        90       100  
pF1KB5 RLATQLTEEEQ----IRIAQRIGL----------IQHLPKGVYDPGRDGSEKKIRECVIC
       .: ..  : :.    . .:.:.:           :..::.  ..:.   ::. .  ::.:
XP_016 ELDVEDGEVENYEALLNLAERLGEAKPRGLTKADIEQLPSYRFNPNNHQSEQTL--CVVC
         300       310       320       330       340         350   

            110       120       130       140       150    
pF1KB5 MMDFVYGDPIRFLPCMHIYHLDCIDDWLMRSFTCPSCMEPVDAALLSSYETN
       : ::   . .: ::: : .:  :.: ::  . ::: :               
XP_016 MCDFESRQLLRVLPCNHEFHAKCVDKWLKANRTCPICRADASEVHRDSE   
           360       370       380       390       400     

>>XP_016869785 (OMIM: 612488) PREDICTED: E3 ubiquitin-pr  (402 aa)
 initn: 225 init1: 171 opt: 200  Z-score: 190.5  bits: 42.7 E(85289): 0.00072
Smith-Waterman score: 219; 33.9% identity (54.3% similar) in 127 aa overlap (36-139:267-390)

          10        20        30        40                 50      
pF1KB5 KSPTSDDISLLHESQSDRASFGEGTEPDQEPPPPYQEQV--------PVP-VYHPTPSQT
                                     :::::. ..        ::: .  :: :  
XP_016 HQEVSFGVPYPPFMPRRLTGRSRYRSQQPIPPPPYHPSLLPYVLSMLPVPPAVGPTFS-F
        240       250       260       270       280       290      

         60            70                  80        90       100  
pF1KB5 RLATQLTEEEQ----IRIAQRIGL----------IQHLPKGVYDPGRDGSEKKIRECVIC
       .: ..  : :.    . .:.:.:           :..::.  ..:.   ::. .  ::.:
XP_016 ELDVEDGEVENYEALLNLAERLGEAKPRGLTKADIEQLPSYRFNPNNHQSEQTL--CVVC
         300       310       320       330       340         350   

            110       120       130       140       150    
pF1KB5 MMDFVYGDPIRFLPCMHIYHLDCIDDWLMRSFTCPSCMEPVDAALLSSYETN
       : ::   . .: ::: : .:  :.: ::  . ::: :               
XP_016 MCDFESRQLLRVLPCNHEFHAKCVDKWLKANRTCPICRADASEVHRDSE   
           360       370       380       390       400     

>>XP_006716784 (OMIM: 612488) PREDICTED: E3 ubiquitin-pr  (432 aa)
 initn: 225 init1: 171 opt: 200  Z-score: 190.0  bits: 42.8 E(85289): 0.00076
Smith-Waterman score: 219; 33.9% identity (54.3% similar) in 127 aa overlap (36-139:297-420)

          10        20        30        40                 50      
pF1KB5 KSPTSDDISLLHESQSDRASFGEGTEPDQEPPPPYQEQV--------PVP-VYHPTPSQT
                                     :::::. ..        ::: .  :: :  
XP_006 HQEVSFGVPYPPFMPRRLTGRSRYRSQQPIPPPPYHPSLLPYVLSMLPVPPAVGPTFS-F
        270       280       290       300       310       320      

         60            70                  80        90       100  
pF1KB5 RLATQLTEEEQ----IRIAQRIGL----------IQHLPKGVYDPGRDGSEKKIRECVIC
       .: ..  : :.    . .:.:.:           :..::.  ..:.   ::. .  ::.:
XP_006 ELDVEDGEVENYEALLNLAERLGEAKPRGLTKADIEQLPSYRFNPNNHQSEQTL--CVVC
         330       340       350       360       370         380   

            110       120       130       140       150    
pF1KB5 MMDFVYGDPIRFLPCMHIYHLDCIDDWLMRSFTCPSCMEPVDAALLSSYETN
       : ::   . .: ::: : .:  :.: ::  . ::: :               
XP_006 MCDFESRQLLRVLPCNHEFHAKCVDKWLKANRTCPICRADASEVHRDSE   
           390       400       410       420       430     




154 residues in 1 query   sequences
60827320 residues in 85289 library sequences
 Tcomplib [36.3.4 Apr, 2011] (8 proc)
 start: Thu Nov  3 17:15:03 2016 done: Thu Nov  3 17:15:04 2016
 Total Scan time:  5.940 Total Display time: -0.020

Function used was FASTA [36.3.4 Apr, 2011]
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