Result of FASTA (omim) for pF1KB5104
FASTA searches a protein or DNA sequence data bank 36.3.4 Apr, 2011
Please cite:
W.R. Pearson & D.J. Lipman PNAS (1988) 85:2444-2448

Query: pF1KB5104, 548 aa
  1>>>pF1KB5104 548 - 548 aa - 548 aa
Library: /omim/omim.rfq.tfa
  60827320 residues in 85289 sequences

Statistics:  Expectation_n fit: rho(ln(x))= 5.9603+/-0.000442; mu= 16.1923+/- 0.028
 mean_var=92.5315+/-19.149, 0's: 0 Z-trim(111.0): 22  B-trim: 722 in 1/57
 Lambda= 0.133330
 statistics sampled from 19505 (19511) to 19505 sequences
Algorithm: FASTA (3.7 Nov 2010) [optimized]
Parameters: BL50 matrix (15:-5), open/ext: -10/-2
 ktup: 2, E-join: 1 (0.584), E-opt: 0.2 (0.229), width:  16
 Scan time:  9.300

The best scores are:                                      opt bits E(85289)
NP_005307 (OMIM: 189972) general transcription fac ( 548) 3556 694.8 1.8e-199
XP_006718271 (OMIM: 189972) PREDICTED: general tra ( 548) 3556 694.8 1.8e-199
NP_001135779 (OMIM: 189972) general transcription  ( 548) 3556 694.8 1.8e-199


>>NP_005307 (OMIM: 189972) general transcription factor   (548 aa)
 initn: 3556 init1: 3556 opt: 3556  Z-score: 3702.3  bits: 694.8 E(85289): 1.8e-199
Smith-Waterman score: 3556; 100.0% identity (100.0% similar) in 548 aa overlap (1-548:1-548)

               10        20        30        40        50        60
pF1KB5 MATSSEEVLLIVKKVRQKKQDGALYLMAERIAWAPEGKDRFTISHMYADIKCQKISPEGK
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_005 MATSSEEVLLIVKKVRQKKQDGALYLMAERIAWAPEGKDRFTISHMYADIKCQKISPEGK
               10        20        30        40        50        60

               70        80        90       100       110       120
pF1KB5 AKIQLQLVLHAGDTTNFHFSNESTAVKERDAVKDLLQQLLPKFKRKANKELEEKNRMLQE
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_005 AKIQLQLVLHAGDTTNFHFSNESTAVKERDAVKDLLQQLLPKFKRKANKELEEKNRMLQE
               70        80        90       100       110       120

              130       140       150       160       170       180
pF1KB5 DPVLFQLYKDLVVSQVISAEEFWANRLNVNATDSSSTSNHKQDVGISAAFLADVRPQTDG
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_005 DPVLFQLYKDLVVSQVISAEEFWANRLNVNATDSSSTSNHKQDVGISAAFLADVRPQTDG
              130       140       150       160       170       180

              190       200       210       220       230       240
pF1KB5 CNGLRYNLTSDIIESIFRTYPAVKMKYAENVPHNMTEKEFWTRFFQSHYFHRDRLNTGSK
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_005 CNGLRYNLTSDIIESIFRTYPAVKMKYAENVPHNMTEKEFWTRFFQSHYFHRDRLNTGSK
              190       200       210       220       230       240

              250       260       270       280       290       300
pF1KB5 DLFAECAKIDEKGLKTMVSLGVKNPLLDLTALEDKPLDEGYGISSVPSASNSKSIKENSN
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_005 DLFAECAKIDEKGLKTMVSLGVKNPLLDLTALEDKPLDEGYGISSVPSASNSKSIKENSN
              250       260       270       280       290       300

              310       320       330       340       350       360
pF1KB5 AAIIKRFNHHSAMVLAAGLRKQEAQNEQTSEPSNMDGNSGDADCFQPAVKRAKLQESIEY
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_005 AAIIKRFNHHSAMVLAAGLRKQEAQNEQTSEPSNMDGNSGDADCFQPAVKRAKLQESIEY
              310       320       330       340       350       360

              370       380       390       400       410       420
pF1KB5 EDLGKNNSVKTIALNLKKSDRYYHGPTPIQSLQYATSQDIINSFQSIRQEMEAYTPKLTQ
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_005 EDLGKNNSVKTIALNLKKSDRYYHGPTPIQSLQYATSQDIINSFQSIRQEMEAYTPKLTQ
              370       380       390       400       410       420

              430       440       450       460       470       480
pF1KB5 VLSSSAASSTITALSPGGALMQGGTQQAINQMVPNDIQSELKHLYVAVGELLRHFWSCFP
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_005 VLSSSAASSTITALSPGGALMQGGTQQAINQMVPNDIQSELKHLYVAVGELLRHFWSCFP
              430       440       450       460       470       480

              490       500       510       520       530       540
pF1KB5 VNTPFLEEKVVKMKSNLERFQVTKLCPFQEKIRRQYLSTNLVSHIEEMLQTAYNKLHTWQ
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_005 VNTPFLEEKVVKMKSNLERFQVTKLCPFQEKIRRQYLSTNLVSHIEEMLQTAYNKLHTWQ
              490       500       510       520       530       540

               
pF1KB5 SRRLMKKT
       ::::::::
NP_005 SRRLMKKT
               

>>XP_006718271 (OMIM: 189972) PREDICTED: general transcr  (548 aa)
 initn: 3556 init1: 3556 opt: 3556  Z-score: 3702.3  bits: 694.8 E(85289): 1.8e-199
Smith-Waterman score: 3556; 100.0% identity (100.0% similar) in 548 aa overlap (1-548:1-548)

               10        20        30        40        50        60
pF1KB5 MATSSEEVLLIVKKVRQKKQDGALYLMAERIAWAPEGKDRFTISHMYADIKCQKISPEGK
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_006 MATSSEEVLLIVKKVRQKKQDGALYLMAERIAWAPEGKDRFTISHMYADIKCQKISPEGK
               10        20        30        40        50        60

               70        80        90       100       110       120
pF1KB5 AKIQLQLVLHAGDTTNFHFSNESTAVKERDAVKDLLQQLLPKFKRKANKELEEKNRMLQE
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_006 AKIQLQLVLHAGDTTNFHFSNESTAVKERDAVKDLLQQLLPKFKRKANKELEEKNRMLQE
               70        80        90       100       110       120

              130       140       150       160       170       180
pF1KB5 DPVLFQLYKDLVVSQVISAEEFWANRLNVNATDSSSTSNHKQDVGISAAFLADVRPQTDG
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_006 DPVLFQLYKDLVVSQVISAEEFWANRLNVNATDSSSTSNHKQDVGISAAFLADVRPQTDG
              130       140       150       160       170       180

              190       200       210       220       230       240
pF1KB5 CNGLRYNLTSDIIESIFRTYPAVKMKYAENVPHNMTEKEFWTRFFQSHYFHRDRLNTGSK
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_006 CNGLRYNLTSDIIESIFRTYPAVKMKYAENVPHNMTEKEFWTRFFQSHYFHRDRLNTGSK
              190       200       210       220       230       240

              250       260       270       280       290       300
pF1KB5 DLFAECAKIDEKGLKTMVSLGVKNPLLDLTALEDKPLDEGYGISSVPSASNSKSIKENSN
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_006 DLFAECAKIDEKGLKTMVSLGVKNPLLDLTALEDKPLDEGYGISSVPSASNSKSIKENSN
              250       260       270       280       290       300

              310       320       330       340       350       360
pF1KB5 AAIIKRFNHHSAMVLAAGLRKQEAQNEQTSEPSNMDGNSGDADCFQPAVKRAKLQESIEY
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_006 AAIIKRFNHHSAMVLAAGLRKQEAQNEQTSEPSNMDGNSGDADCFQPAVKRAKLQESIEY
              310       320       330       340       350       360

              370       380       390       400       410       420
pF1KB5 EDLGKNNSVKTIALNLKKSDRYYHGPTPIQSLQYATSQDIINSFQSIRQEMEAYTPKLTQ
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_006 EDLGKNNSVKTIALNLKKSDRYYHGPTPIQSLQYATSQDIINSFQSIRQEMEAYTPKLTQ
              370       380       390       400       410       420

              430       440       450       460       470       480
pF1KB5 VLSSSAASSTITALSPGGALMQGGTQQAINQMVPNDIQSELKHLYVAVGELLRHFWSCFP
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_006 VLSSSAASSTITALSPGGALMQGGTQQAINQMVPNDIQSELKHLYVAVGELLRHFWSCFP
              430       440       450       460       470       480

              490       500       510       520       530       540
pF1KB5 VNTPFLEEKVVKMKSNLERFQVTKLCPFQEKIRRQYLSTNLVSHIEEMLQTAYNKLHTWQ
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_006 VNTPFLEEKVVKMKSNLERFQVTKLCPFQEKIRRQYLSTNLVSHIEEMLQTAYNKLHTWQ
              490       500       510       520       530       540

               
pF1KB5 SRRLMKKT
       ::::::::
XP_006 SRRLMKKT
               

>>NP_001135779 (OMIM: 189972) general transcription fact  (548 aa)
 initn: 3556 init1: 3556 opt: 3556  Z-score: 3702.3  bits: 694.8 E(85289): 1.8e-199
Smith-Waterman score: 3556; 100.0% identity (100.0% similar) in 548 aa overlap (1-548:1-548)

               10        20        30        40        50        60
pF1KB5 MATSSEEVLLIVKKVRQKKQDGALYLMAERIAWAPEGKDRFTISHMYADIKCQKISPEGK
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 MATSSEEVLLIVKKVRQKKQDGALYLMAERIAWAPEGKDRFTISHMYADIKCQKISPEGK
               10        20        30        40        50        60

               70        80        90       100       110       120
pF1KB5 AKIQLQLVLHAGDTTNFHFSNESTAVKERDAVKDLLQQLLPKFKRKANKELEEKNRMLQE
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 AKIQLQLVLHAGDTTNFHFSNESTAVKERDAVKDLLQQLLPKFKRKANKELEEKNRMLQE
               70        80        90       100       110       120

              130       140       150       160       170       180
pF1KB5 DPVLFQLYKDLVVSQVISAEEFWANRLNVNATDSSSTSNHKQDVGISAAFLADVRPQTDG
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 DPVLFQLYKDLVVSQVISAEEFWANRLNVNATDSSSTSNHKQDVGISAAFLADVRPQTDG
              130       140       150       160       170       180

              190       200       210       220       230       240
pF1KB5 CNGLRYNLTSDIIESIFRTYPAVKMKYAENVPHNMTEKEFWTRFFQSHYFHRDRLNTGSK
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 CNGLRYNLTSDIIESIFRTYPAVKMKYAENVPHNMTEKEFWTRFFQSHYFHRDRLNTGSK
              190       200       210       220       230       240

              250       260       270       280       290       300
pF1KB5 DLFAECAKIDEKGLKTMVSLGVKNPLLDLTALEDKPLDEGYGISSVPSASNSKSIKENSN
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 DLFAECAKIDEKGLKTMVSLGVKNPLLDLTALEDKPLDEGYGISSVPSASNSKSIKENSN
              250       260       270       280       290       300

              310       320       330       340       350       360
pF1KB5 AAIIKRFNHHSAMVLAAGLRKQEAQNEQTSEPSNMDGNSGDADCFQPAVKRAKLQESIEY
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 AAIIKRFNHHSAMVLAAGLRKQEAQNEQTSEPSNMDGNSGDADCFQPAVKRAKLQESIEY
              310       320       330       340       350       360

              370       380       390       400       410       420
pF1KB5 EDLGKNNSVKTIALNLKKSDRYYHGPTPIQSLQYATSQDIINSFQSIRQEMEAYTPKLTQ
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 EDLGKNNSVKTIALNLKKSDRYYHGPTPIQSLQYATSQDIINSFQSIRQEMEAYTPKLTQ
              370       380       390       400       410       420

              430       440       450       460       470       480
pF1KB5 VLSSSAASSTITALSPGGALMQGGTQQAINQMVPNDIQSELKHLYVAVGELLRHFWSCFP
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 VLSSSAASSTITALSPGGALMQGGTQQAINQMVPNDIQSELKHLYVAVGELLRHFWSCFP
              430       440       450       460       470       480

              490       500       510       520       530       540
pF1KB5 VNTPFLEEKVVKMKSNLERFQVTKLCPFQEKIRRQYLSTNLVSHIEEMLQTAYNKLHTWQ
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 VNTPFLEEKVVKMKSNLERFQVTKLCPFQEKIRRQYLSTNLVSHIEEMLQTAYNKLHTWQ
              490       500       510       520       530       540

               
pF1KB5 SRRLMKKT
       ::::::::
NP_001 SRRLMKKT
               




548 residues in 1 query   sequences
60827320 residues in 85289 library sequences
 Tcomplib [36.3.4 Apr, 2011] (8 proc)
 start: Thu Nov  3 16:02:54 2016 done: Thu Nov  3 16:02:56 2016
 Total Scan time:  9.300 Total Display time: -0.010

Function used was FASTA [36.3.4 Apr, 2011]
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