Result of FASTA (omim) for pF1KB4679
FASTA searches a protein or DNA sequence data bank 36.3.4 Apr, 2011
Please cite:
W.R. Pearson & D.J. Lipman PNAS (1988) 85:2444-2448

Query: pF1KB4679, 201 aa
  1>>>pF1KB4679 201 - 201 aa - 201 aa
Library: /omim/omim.rfq.tfa
  60827320 residues in 85289 sequences

Statistics:  Expectation_n fit: rho(ln(x))= 6.0679+/-0.00033; mu= 13.6237+/- 0.021
 mean_var=243.2416+/-55.269, 0's: 0 Z-trim(121.2): 76  B-trim: 2184 in 1/55
 Lambda= 0.082235
 statistics sampled from 37285 (37410) to 37285 sequences
Algorithm: FASTA (3.7 Nov 2010) [optimized]
Parameters: BL50 matrix (15:-5), open/ext: -10/-2
 ktup: 2, E-join: 1 (0.778), E-opt: 0.2 (0.439), width:  16
 Scan time:  6.390

The best scores are:                                      opt bits E(85289)
NP_001071634 (OMIM: 600812) serine/arginine-rich s ( 201) 1431 181.7 7.1e-46
NP_008855 (OMIM: 600812) serine/arginine-rich spli ( 248) 1307 167.1 2.1e-41
NP_003760 (OMIM: 601943) serine/arginine-rich spli ( 221)  865 114.6 1.2e-25
XP_011540253 (OMIM: 601940) PREDICTED: serine/argi ( 464)  464 67.5 3.7e-11
NP_005617 (OMIM: 601940) serine/arginine-rich spli ( 494)  464 67.6 3.8e-11
XP_005268056 (OMIM: 600914) PREDICTED: serine/argi ( 271)  456 66.2 5.5e-11
XP_005268057 (OMIM: 600914) PREDICTED: serine/argi ( 271)  456 66.2 5.5e-11
XP_016877082 (OMIM: 600914) PREDICTED: serine/argi ( 271)  456 66.2 5.5e-11
NP_001034554 (OMIM: 600914) serine/arginine-rich s ( 272)  456 66.2 5.5e-11
NP_008856 (OMIM: 600914) serine/arginine-rich spli ( 272)  456 66.2 5.5e-11
NP_001307143 (OMIM: 600914) serine/arginine-rich s ( 272)  456 66.2 5.5e-11
NP_006266 (OMIM: 601944) serine/arginine-rich spli ( 344)  449 65.5 1.1e-10
NP_003008 (OMIM: 603364) serine/arginine-rich spli ( 164)  257 42.2 0.00054


>>NP_001071634 (OMIM: 600812) serine/arginine-rich splic  (201 aa)
 initn: 1431 init1: 1431 opt: 1431  Z-score: 944.6  bits: 181.7 E(85289): 7.1e-46
Smith-Waterman score: 1431; 100.0% identity (100.0% similar) in 201 aa overlap (1-201:1-201)

               10        20        30        40        50        60
pF1KB4 MSGGGVIRGPAGNNDCRIYVGNLPPDIRTKDIEDVFYKYGAIRDIDLKNRRGGPPFAFVE
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 MSGGGVIRGPAGNNDCRIYVGNLPPDIRTKDIEDVFYKYGAIRDIDLKNRRGGPPFAFVE
               10        20        30        40        50        60

               70        80        90       100       110       120
pF1KB4 FEDPRDAEDAVYGRDGYDYDGYRLRVEFPRSGRGTGRGGGGGGGGGAPRGRYGPPSRRSE
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 FEDPRDAEDAVYGRDGYDYDGYRLRVEFPRSGRGTGRGGGGGGGGGAPRGRYGPPSRRSE
               70        80        90       100       110       120

              130       140       150       160       170       180
pF1KB4 NRVVVSGLPPSGSWQDLKDHMREAGDVCYADVYRDGTGVVEFVRKEDMTYAVRKLDNTKF
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 NRVVVSGLPPSGSWQDLKDHMREAGDVCYADVYRDGTGVVEFVRKEDMTYAVRKLDNTKF
              130       140       150       160       170       180

              190       200 
pF1KB4 RSHEVGYTRILFFDQNWIQWS
       :::::::::::::::::::::
NP_001 RSHEVGYTRILFFDQNWIQWS
              190       200 

>>NP_008855 (OMIM: 600812) serine/arginine-rich splicing  (248 aa)
 initn: 1303 init1: 1303 opt: 1307  Z-score: 864.3  bits: 167.1 E(85289): 2.1e-41
Smith-Waterman score: 1307; 96.9% identity (98.4% similar) in 192 aa overlap (1-190:1-192)

               10        20        30        40        50        60
pF1KB4 MSGGGVIRGPAGNNDCRIYVGNLPPDIRTKDIEDVFYKYGAIRDIDLKNRRGGPPFAFVE
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_008 MSGGGVIRGPAGNNDCRIYVGNLPPDIRTKDIEDVFYKYGAIRDIDLKNRRGGPPFAFVE
               10        20        30        40        50        60

               70        80        90       100       110       120
pF1KB4 FEDPRDAEDAVYGRDGYDYDGYRLRVEFPRSGRGTGRGGGGGGGGGAPRGRYGPPSRRSE
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_008 FEDPRDAEDAVYGRDGYDYDGYRLRVEFPRSGRGTGRGGGGGGGGGAPRGRYGPPSRRSE
               70        80        90       100       110       120

              130       140       150       160       170       180
pF1KB4 NRVVVSGLPPSGSWQDLKDHMREAGDVCYADVYRDGTGVVEFVRKEDMTYAVRKLDNTKF
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_008 NRVVVSGLPPSGSWQDLKDHMREAGDVCYADVYRDGTGVVEFVRKEDMTYAVRKLDNTKF
              130       140       150       160       170       180

                190       200                                      
pF1KB4 RSHE--VGYTRILFFDQNWIQWS                                     
       ::::  ..: :.                                                
NP_008 RSHEGETAYIRVKVDGPRSPSYGRSRSRSRSRSRSRSRSNSRSRSYSPRRSRGSPRYSPR
              190       200       210       220       230       240

>>NP_003760 (OMIM: 601943) serine/arginine-rich splicing  (221 aa)
 initn: 507 init1: 462 opt: 865  Z-score: 581.3  bits: 114.6 E(85289): 1.2e-25
Smith-Waterman score: 875; 68.9% identity (82.4% similar) in 193 aa overlap (1-190:1-182)

               10        20        30        40        50        60
pF1KB4 MSGGGVIRGPAGNNDCRIYVGNLPPDIRTKDIEDVFYKYGAIRDIDLKNRRGGPPFAFVE
       ::: .  ::  :..: :::::::: :.: ::.::.::::: ::.:.::::.:  :::::.
NP_003 MSGWADERG--GEGDGRIYVGNLPTDVREKDLEDLFYKYGRIREIELKNRHGLVPFAFVR
                 10        20        30        40        50        

               70        80        90       100       110          
pF1KB4 FEDPRDAEDAVYGRDGYDYDGYRLRVEFPRSGRGTGRGGGGGGGGGAPRG-RYGPPSRRS
       ::::::::::.:::.::::   ::::::::.          :: :: ::: : :::.:::
NP_003 FEDPRDAEDAIYGRNGYDYGQCRLRVEFPRTY---------GGRGGWPRGGRNGPPTRRS
       60        70        80        90                100         

     120       130       140       150       160       170         
pF1KB4 ENRVVVSGLPPSGSWQDLKDHMREAGDVCYADVYRDGTGVVEFVRKEDMTYAVRKLDNTK
       . ::.:::::::::::::::::::::::::::: .::.:.::..::::: ::.::::.::
NP_003 DFRVLVSGLPPSGSWQDLKDHMREAGDVCYADVQKDGVGMVEYLRKEDMEYALRKLDDTK
     110       120       130       140       150       160         

     180         190       200                             
pF1KB4 FRSHE--VGYTRILFFDQNWIQWS                            
       :::::  ..: :.                                       
NP_003 FRSHEGETSYIRVYPERSTSYGYSRSRSGSRGRDSPYQSRGSPHYFSPFRPY
     170       180       190       200       210       220 

>>XP_011540253 (OMIM: 601940) PREDICTED: serine/arginine  (464 aa)
 initn: 443 init1: 143 opt: 464  Z-score: 321.3  bits: 67.5 E(85289): 3.7e-11
Smith-Waterman score: 464; 45.4% identity (66.1% similar) in 174 aa overlap (17-185:3-170)

               10        20        30        40        50        60
pF1KB4 MSGGGVIRGPAGNNDCRIYVGNLPPDIRTKDIEDVFYKYGAIRDIDLKNRRGGPPFAFVE
                       :.:.: :  . : .:.:  :  :: : ..::::  :     :::
XP_011               MPRVYIGRLSYQARERDVERFFKGYGKILEVDLKNGYG-----FVE
                             10        20        30             40 

               70        80        90       100          110       
pF1KB4 FEDPRDAEDAVYGRDGYDYDGYRLRVEFPRSGRGTGRGGGGGGGGG---APRGRYGPPSR
       :.: :::.::::  .: :  : :. ::  :. :  :  :.: .: :   . : .::::.:
XP_011 FDDLRDADDAVYELNGKDLCGERVIVEHARGPRRDGSYGSGRSGYGYRRSGRDKYGPPTR
              50        60        70        80        90       100 

       120       130       140       150         160       170     
pF1KB4 RSENRVVVSGLPPSGSWQDLKDHMREAGDVCYADVY--RDGTGVVEFVRKEDMTYAVRKL
        .: :..: .:    :::::::.::.::.: :::..  : . ::.:::   ::  :..::
XP_011 -TEYRLIVENLSSRCSWQDLKDYMRQAGEVTYADAHKGRKNEGVIEFVSYSDMKRALEKL
              110       120       130       140       150       160

         180       190       200                                   
pF1KB4 DNTKFRSHEVGYTRILFFDQNWIQWS                                  
       :.:.  ....                                                  
XP_011 DGTEVNGRKIRLVEDKPGSRRRRSYSRSRSHSRSGSRSRSKSRSRSQSRSRSKKEKSRSP
              170       180       190       200       210       220

>>NP_005617 (OMIM: 601940) serine/arginine-rich splicing  (494 aa)
 initn: 443 init1: 143 opt: 464  Z-score: 321.1  bits: 67.6 E(85289): 3.8e-11
Smith-Waterman score: 464; 45.4% identity (66.1% similar) in 174 aa overlap (17-185:3-170)

               10        20        30        40        50        60
pF1KB4 MSGGGVIRGPAGNNDCRIYVGNLPPDIRTKDIEDVFYKYGAIRDIDLKNRRGGPPFAFVE
                       :.:.: :  . : .:.:  :  :: : ..::::  :     :::
NP_005               MPRVYIGRLSYQARERDVERFFKGYGKILEVDLKNGYG-----FVE
                             10        20        30             40 

               70        80        90       100          110       
pF1KB4 FEDPRDAEDAVYGRDGYDYDGYRLRVEFPRSGRGTGRGGGGGGGGG---APRGRYGPPSR
       :.: :::.::::  .: :  : :. ::  :. :  :  :.: .: :   . : .::::.:
NP_005 FDDLRDADDAVYELNGKDLCGERVIVEHARGPRRDGSYGSGRSGYGYRRSGRDKYGPPTR
              50        60        70        80        90       100 

       120       130       140       150         160       170     
pF1KB4 RSENRVVVSGLPPSGSWQDLKDHMREAGDVCYADVY--RDGTGVVEFVRKEDMTYAVRKL
        .: :..: .:    :::::::.::.::.: :::..  : . ::.:::   ::  :..::
NP_005 -TEYRLIVENLSSRCSWQDLKDYMRQAGEVTYADAHKGRKNEGVIEFVSYSDMKRALEKL
              110       120       130       140       150       160

         180       190       200                                   
pF1KB4 DNTKFRSHEVGYTRILFFDQNWIQWS                                  
       :.:.  ....                                                  
NP_005 DGTEVNGRKIRLVEDKPGSRRRRSYSRSRSHSRSRSRSRHSRKSRSRSGSSKSSHSKSRS
              170       180       190       200       210       220

>>XP_005268056 (OMIM: 600914) PREDICTED: serine/arginine  (271 aa)
 initn: 474 init1: 175 opt: 456  Z-score: 318.3  bits: 66.2 E(85289): 5.5e-11
Smith-Waterman score: 456; 45.8% identity (67.8% similar) in 177 aa overlap (16-185:4-174)

               10        20        30        40        50        60
pF1KB4 MSGGGVIRGPAGNNDCRIYVGNLPPDIRTKDIEDVFYKYGAIRDIDLKNRRGGPPFAFVE
                      ::...: : :  : ::.:  :  :: :::::::  ::   :.:::
XP_005             MSGCRVFIGRLNPAAREKDVERFFKGYGRIRDIDLK--RG---FGFVE
                           10        20        30             40   

               70        80        90        100          110      
pF1KB4 FEDPRDAEDAVYGRDGYDYDGYRLRVEFPRS-GRGTGRGGGGGG---GGGAPRG-RYGPP
       :::::::.::::  :: .  . :. .:  :. .:: ::: :  .   ..  ::. : . :
XP_005 FEDPRDADDAVYELDGKELCSERVTIEHARARSRG-GRGRGRYSDRFSSRRPRNDRRNAP
            50        60        70         80        90       100  

         120       130       140       150         160       170   
pF1KB4 SRRSENRVVVSGLPPSGSWQDLKDHMREAGDVCYADVYRD--GTGVVEFVRKEDMTYAVR
         :.:::..: .:    ::::::: ::.::.: .::..:   . :::::.   :.  :..
XP_005 PVRTENRLIVENLSSRVSWQDLKDFMRQAGEVTFADAHRPKLNEGVVEFASYGDLKNAIE
            110       120       130       140       150       160  

           180       190       200                                 
pF1KB4 KLDNTKFRSHEVGYTRILFFDQNWIQWS                                
       ::.. .. ....                                                
XP_005 KLSGKEINGRKIKLIEGSKRHRSRSRSRSRTRSSSRSRSRSRSRSRKSYSRSRSRSRSRS
            170       180       190       200       210       220  

>>XP_005268057 (OMIM: 600914) PREDICTED: serine/arginine  (271 aa)
 initn: 474 init1: 175 opt: 456  Z-score: 318.3  bits: 66.2 E(85289): 5.5e-11
Smith-Waterman score: 456; 45.8% identity (67.8% similar) in 177 aa overlap (16-185:4-174)

               10        20        30        40        50        60
pF1KB4 MSGGGVIRGPAGNNDCRIYVGNLPPDIRTKDIEDVFYKYGAIRDIDLKNRRGGPPFAFVE
                      ::...: : :  : ::.:  :  :: :::::::  ::   :.:::
XP_005             MSGCRVFIGRLNPAAREKDVERFFKGYGRIRDIDLK--RG---FGFVE
                           10        20        30             40   

               70        80        90        100          110      
pF1KB4 FEDPRDAEDAVYGRDGYDYDGYRLRVEFPRS-GRGTGRGGGGGG---GGGAPRG-RYGPP
       :::::::.::::  :: .  . :. .:  :. .:: ::: :  .   ..  ::. : . :
XP_005 FEDPRDADDAVYELDGKELCSERVTIEHARARSRG-GRGRGRYSDRFSSRRPRNDRRNAP
            50        60        70         80        90       100  

         120       130       140       150         160       170   
pF1KB4 SRRSENRVVVSGLPPSGSWQDLKDHMREAGDVCYADVYRD--GTGVVEFVRKEDMTYAVR
         :.:::..: .:    ::::::: ::.::.: .::..:   . :::::.   :.  :..
XP_005 PVRTENRLIVENLSSRVSWQDLKDFMRQAGEVTFADAHRPKLNEGVVEFASYGDLKNAIE
            110       120       130       140       150       160  

           180       190       200                                 
pF1KB4 KLDNTKFRSHEVGYTRILFFDQNWIQWS                                
       ::.. .. ....                                                
XP_005 KLSGKEINGRKIKLIEGSKRHRSRSRSRSRTRSSSRSRSRSRSRSRKSYSRSRSRSRSRS
            170       180       190       200       210       220  

>>XP_016877082 (OMIM: 600914) PREDICTED: serine/arginine  (271 aa)
 initn: 474 init1: 175 opt: 456  Z-score: 318.3  bits: 66.2 E(85289): 5.5e-11
Smith-Waterman score: 456; 45.8% identity (67.8% similar) in 177 aa overlap (16-185:4-174)

               10        20        30        40        50        60
pF1KB4 MSGGGVIRGPAGNNDCRIYVGNLPPDIRTKDIEDVFYKYGAIRDIDLKNRRGGPPFAFVE
                      ::...: : :  : ::.:  :  :: :::::::  ::   :.:::
XP_016             MSGCRVFIGRLNPAAREKDVERFFKGYGRIRDIDLK--RG---FGFVE
                           10        20        30             40   

               70        80        90        100          110      
pF1KB4 FEDPRDAEDAVYGRDGYDYDGYRLRVEFPRS-GRGTGRGGGGGG---GGGAPRG-RYGPP
       :::::::.::::  :: .  . :. .:  :. .:: ::: :  .   ..  ::. : . :
XP_016 FEDPRDADDAVYELDGKELCSERVTIEHARARSRG-GRGRGRYSDRFSSRRPRNDRRNAP
            50        60        70         80        90       100  

         120       130       140       150         160       170   
pF1KB4 SRRSENRVVVSGLPPSGSWQDLKDHMREAGDVCYADVYRD--GTGVVEFVRKEDMTYAVR
         :.:::..: .:    ::::::: ::.::.: .::..:   . :::::.   :.  :..
XP_016 PVRTENRLIVENLSSRVSWQDLKDFMRQAGEVTFADAHRPKLNEGVVEFASYGDLKNAIE
            110       120       130       140       150       160  

           180       190       200                                 
pF1KB4 KLDNTKFRSHEVGYTRILFFDQNWIQWS                                
       ::.. .. ....                                                
XP_016 KLSGKEINGRKIKLIEGSKRHRSRSRSRSRTRSSSRSRSRSRSRSRKSYSRSRSRSRSRS
            170       180       190       200       210       220  

>>NP_001034554 (OMIM: 600914) serine/arginine-rich splic  (272 aa)
 initn: 474 init1: 175 opt: 456  Z-score: 318.3  bits: 66.2 E(85289): 5.5e-11
Smith-Waterman score: 456; 45.8% identity (67.8% similar) in 177 aa overlap (16-185:4-174)

               10        20        30        40        50        60
pF1KB4 MSGGGVIRGPAGNNDCRIYVGNLPPDIRTKDIEDVFYKYGAIRDIDLKNRRGGPPFAFVE
                      ::...: : :  : ::.:  :  :: :::::::  ::   :.:::
NP_001             MSGCRVFIGRLNPAAREKDVERFFKGYGRIRDIDLK--RG---FGFVE
                           10        20        30             40   

               70        80        90        100          110      
pF1KB4 FEDPRDAEDAVYGRDGYDYDGYRLRVEFPRS-GRGTGRGGGGGG---GGGAPRG-RYGPP
       :::::::.::::  :: .  . :. .:  :. .:: ::: :  .   ..  ::. : . :
NP_001 FEDPRDADDAVYELDGKELCSERVTIEHARARSRG-GRGRGRYSDRFSSRRPRNDRRNAP
            50        60        70         80        90       100  

         120       130       140       150         160       170   
pF1KB4 SRRSENRVVVSGLPPSGSWQDLKDHMREAGDVCYADVYRD--GTGVVEFVRKEDMTYAVR
         :.:::..: .:    ::::::: ::.::.: .::..:   . :::::.   :.  :..
NP_001 PVRTENRLIVENLSSRVSWQDLKDFMRQAGEVTFADAHRPKLNEGVVEFASYGDLKNAIE
            110       120       130       140       150       160  

           180       190       200                                 
pF1KB4 KLDNTKFRSHEVGYTRILFFDQNWIQWS                                
       ::.. .. ....                                                
NP_001 KLSGKEINGRKIKLIEGSKRHSRSRSRSRSRTRSSSRSRSRSRSRSRKSYSRSRSRSRSR
            170       180       190       200       210       220  

>>NP_008856 (OMIM: 600914) serine/arginine-rich splicing  (272 aa)
 initn: 474 init1: 175 opt: 456  Z-score: 318.3  bits: 66.2 E(85289): 5.5e-11
Smith-Waterman score: 456; 45.8% identity (67.8% similar) in 177 aa overlap (16-185:4-174)

               10        20        30        40        50        60
pF1KB4 MSGGGVIRGPAGNNDCRIYVGNLPPDIRTKDIEDVFYKYGAIRDIDLKNRRGGPPFAFVE
                      ::...: : :  : ::.:  :  :: :::::::  ::   :.:::
NP_008             MSGCRVFIGRLNPAAREKDVERFFKGYGRIRDIDLK--RG---FGFVE
                           10        20        30             40   

               70        80        90        100          110      
pF1KB4 FEDPRDAEDAVYGRDGYDYDGYRLRVEFPRS-GRGTGRGGGGGG---GGGAPRG-RYGPP
       :::::::.::::  :: .  . :. .:  :. .:: ::: :  .   ..  ::. : . :
NP_008 FEDPRDADDAVYELDGKELCSERVTIEHARARSRG-GRGRGRYSDRFSSRRPRNDRRNAP
            50        60        70         80        90       100  

         120       130       140       150         160       170   
pF1KB4 SRRSENRVVVSGLPPSGSWQDLKDHMREAGDVCYADVYRD--GTGVVEFVRKEDMTYAVR
         :.:::..: .:    ::::::: ::.::.: .::..:   . :::::.   :.  :..
NP_008 PVRTENRLIVENLSSRVSWQDLKDFMRQAGEVTFADAHRPKLNEGVVEFASYGDLKNAIE
            110       120       130       140       150       160  

           180       190       200                                 
pF1KB4 KLDNTKFRSHEVGYTRILFFDQNWIQWS                                
       ::.. .. ....                                                
NP_008 KLSGKEINGRKIKLIEGSKRHSRSRSRSRSRTRSSSRSRSRSRSRSRKSYSRSRSRSRSR
            170       180       190       200       210       220  




201 residues in 1 query   sequences
60827320 residues in 85289 library sequences
 Tcomplib [36.3.4 Apr, 2011] (8 proc)
 start: Thu Nov  3 15:19:52 2016 done: Thu Nov  3 15:19:53 2016
 Total Scan time:  6.390 Total Display time: -0.020

Function used was FASTA [36.3.4 Apr, 2011]
Inquiries or Suggestions ?
Send a message to flexiclone AT kazusagt.com