Result of FASTA (omim) for pF1KB4415
FASTA searches a protein or DNA sequence data bank 36.3.4 Apr, 2011
Please cite:
W.R. Pearson & D.J. Lipman PNAS (1988) 85:2444-2448

Query: pF1KB4415, 130 aa
  1>>>pF1KB4415 130 - 130 aa - 130 aa
Library: /omim/omim.rfq.tfa
  60827320 residues in 85289 sequences

Statistics:  Expectation_n fit: rho(ln(x))= 5.0407+/-0.000325; mu= 12.0617+/- 0.020
 mean_var=58.5877+/-11.573, 0's: 0 Z-trim(115.5): 45  B-trim: 214 in 1/52
 Lambda= 0.167560
 statistics sampled from 25987 (26043) to 25987 sequences
Algorithm: FASTA (3.7 Nov 2010) [optimized]
Parameters: BL50 matrix (15:-5), open/ext: -10/-2
 ktup: 2, E-join: 1 (0.693), E-opt: 0.2 (0.305), width:  16
 Scan time:  5.010

The best scores are:                                      opt bits E(85289)
NP_003503 (OMIM: 602794) histone H2A type 1-C [Hom ( 130)  825 207.2 6.2e-54
NP_254280 (OMIM: 615015) histone H2A type 3 [Homo  ( 130)  821 206.2 1.2e-53
NP_003507 (OMIM: 142720) histone H2A type 2-A [Hom ( 130)  819 205.7 1.7e-53
NP_003500 (OMIM: 602787) histone H2A type 1 [Homo  ( 130)  818 205.5   2e-53
NP_003505 (OMIM: 602796) histone H2A type 1 [Homo  ( 130)  818 205.5   2e-53
NP_003501 (OMIM: 602788) histone H2A type 1 [Homo  ( 130)  818 205.5   2e-53
NP_066390 (OMIM: 602786) histone H2A type 1-B/E [H ( 130)  818 205.5   2e-53
NP_066408 (OMIM: 615012) histone H2A type 1 [Homo  ( 130)  818 205.5   2e-53
NP_003504 (OMIM: 602795) histone H2A type 1-B/E [H ( 130)  818 205.5   2e-53
NP_003502 (OMIM: 602793) histone H2A type 1 [Homo  ( 130)  818 205.5   2e-53
NP_066409 (OMIM: 602792) histone H2A type 1-D [Hom ( 130)  814 204.5 3.9e-53
NP_542163 (OMIM: 615013) histone H2A type 1-H [Hom ( 128)  804 202.1 2.1e-52
NP_066544 (OMIM: 602791) histone cluster 1, H2aj [ ( 128)  799 200.9 4.8e-52
NP_003508 (OMIM: 602797) histone H2A type 2-C [Hom ( 129)  789 198.5 2.6e-51
NP_778235 (OMIM: 615014) histone H2A type 2-B [Hom ( 130)  784 197.3   6e-51
NP_734466 (OMIM: 613499) histone H2A type 1-A [Hom ( 131)  781 196.5 9.9e-51
NP_002096 (OMIM: 601772) histone H2AX [Homo sapien ( 143)  739 186.4 1.2e-47
XP_011542037 (OMIM: 610054) PREDICTED: core histon ( 195)  495 127.5   9e-30
XP_011542036 (OMIM: 610054) PREDICTED: core histon ( 196)  495 127.5 9.1e-30
XP_005272192 (OMIM: 610054) PREDICTED: core histon ( 198)  495 127.5 9.1e-30
XP_005272191 (OMIM: 610054) PREDICTED: core histon ( 199)  495 127.5 9.2e-30
XP_016865558 (OMIM: 610054) PREDICTED: core histon ( 222)  495 127.5   1e-29
XP_016865557 (OMIM: 610054) PREDICTED: core histon ( 235)  495 127.5 1.1e-29
XP_016865556 (OMIM: 610054) PREDICTED: core histon ( 251)  495 127.5 1.1e-29
XP_011542035 (OMIM: 610054) PREDICTED: core histon ( 252)  495 127.6 1.1e-29
XP_011542034 (OMIM: 610054) PREDICTED: core histon ( 269)  495 127.6 1.2e-29
XP_011542033 (OMIM: 610054) PREDICTED: core histon ( 270)  495 127.6 1.2e-29
XP_005272189 (OMIM: 610054) PREDICTED: core histon ( 368)  495 127.6 1.5e-29
NP_613075 (OMIM: 610054) core histone macro-H2A.1  ( 369)  495 127.6 1.5e-29
NP_001035248 (OMIM: 610054) core histone macro-H2A ( 371)  495 127.6 1.6e-29
NP_004884 (OMIM: 610054) core histone macro-H2A.1  ( 371)  495 127.6 1.6e-29
XP_011542032 (OMIM: 610054) PREDICTED: core histon ( 371)  495 127.6 1.6e-29
NP_613258 (OMIM: 610054) core histone macro-H2A.1  ( 372)  495 127.6 1.6e-29
XP_011542031 (OMIM: 610054) PREDICTED: core histon ( 372)  495 127.6 1.6e-29
NP_061119 (OMIM: 616141) core histone macro-H2A.2  ( 372)  485 125.2 8.3e-29
NP_002097 (OMIM: 142763) histone H2A.Z [Homo sapie ( 128)  451 116.8   1e-26
NP_542451 (OMIM: 300445) histone H2A-Bbd type 2/3  ( 115)  302 80.7 6.4e-16
XP_011531366 (OMIM: 135300,182530,610733) PREDICTE (1276)  158 46.4 0.00015
XP_005264572 (OMIM: 135300,182530,610733) PREDICTE (1318)  158 46.5 0.00015
XP_011531364 (OMIM: 135300,182530,610733) PREDICTE (1326)  158 46.5 0.00015
NP_005624 (OMIM: 135300,182530,610733) son of seve (1333)  158 46.5 0.00015
NP_008870 (OMIM: 601247,616559) son of sevenless h (1332)  136 41.1  0.0061


>>NP_003503 (OMIM: 602794) histone H2A type 1-C [Homo sa  (130 aa)
 initn: 825 init1: 825 opt: 825  Z-score: 1089.3  bits: 207.2 E(85289): 6.2e-54
Smith-Waterman score: 825; 100.0% identity (100.0% similar) in 130 aa overlap (1-130:1-130)

               10        20        30        40        50        60
pF1KB4 MSGRGKQGGKARAKAKSRSSRAGLQFPVGRVHRLLRKGNYAERVGAGAPVYLAAVLEYLT
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_003 MSGRGKQGGKARAKAKSRSSRAGLQFPVGRVHRLLRKGNYAERVGAGAPVYLAAVLEYLT
               10        20        30        40        50        60

               70        80        90       100       110       120
pF1KB4 AEILELAGNAARDNKKTRIIPRHLQLAIRNDEELNKLLGRVTIAQGGVLPNIQAVLLPKK
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_003 AEILELAGNAARDNKKTRIIPRHLQLAIRNDEELNKLLGRVTIAQGGVLPNIQAVLLPKK
               70        80        90       100       110       120

              130
pF1KB4 TESHHKAKGK
       ::::::::::
NP_003 TESHHKAKGK
              130

>>NP_254280 (OMIM: 615015) histone H2A type 3 [Homo sapi  (130 aa)
 initn: 821 init1: 821 opt: 821  Z-score: 1084.0  bits: 206.2 E(85289): 1.2e-53
Smith-Waterman score: 821; 99.2% identity (100.0% similar) in 130 aa overlap (1-130:1-130)

               10        20        30        40        50        60
pF1KB4 MSGRGKQGGKARAKAKSRSSRAGLQFPVGRVHRLLRKGNYAERVGAGAPVYLAAVLEYLT
       ::::::::::::::::::::::::::::::::::::::::.:::::::::::::::::::
NP_254 MSGRGKQGGKARAKAKSRSSRAGLQFPVGRVHRLLRKGNYSERVGAGAPVYLAAVLEYLT
               10        20        30        40        50        60

               70        80        90       100       110       120
pF1KB4 AEILELAGNAARDNKKTRIIPRHLQLAIRNDEELNKLLGRVTIAQGGVLPNIQAVLLPKK
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_254 AEILELAGNAARDNKKTRIIPRHLQLAIRNDEELNKLLGRVTIAQGGVLPNIQAVLLPKK
               70        80        90       100       110       120

              130
pF1KB4 TESHHKAKGK
       ::::::::::
NP_254 TESHHKAKGK
              130

>>NP_003507 (OMIM: 142720) histone H2A type 2-A [Homo sa  (130 aa)
 initn: 819 init1: 819 opt: 819  Z-score: 1081.4  bits: 205.7 E(85289): 1.7e-53
Smith-Waterman score: 819; 98.5% identity (100.0% similar) in 130 aa overlap (1-130:1-130)

               10        20        30        40        50        60
pF1KB4 MSGRGKQGGKARAKAKSRSSRAGLQFPVGRVHRLLRKGNYAERVGAGAPVYLAAVLEYLT
       :::::::::::::::::::::::::::::::::::::::::::::::::::.::::::::
NP_003 MSGRGKQGGKARAKAKSRSSRAGLQFPVGRVHRLLRKGNYAERVGAGAPVYMAAVLEYLT
               10        20        30        40        50        60

               70        80        90       100       110       120
pF1KB4 AEILELAGNAARDNKKTRIIPRHLQLAIRNDEELNKLLGRVTIAQGGVLPNIQAVLLPKK
       :::::::::::::::::::::::::::::::::::::::.::::::::::::::::::::
NP_003 AEILELAGNAARDNKKTRIIPRHLQLAIRNDEELNKLLGKVTIAQGGVLPNIQAVLLPKK
               70        80        90       100       110       120

              130
pF1KB4 TESHHKAKGK
       ::::::::::
NP_003 TESHHKAKGK
              130

>>NP_003500 (OMIM: 602787) histone H2A type 1 [Homo sapi  (130 aa)
 initn: 818 init1: 818 opt: 818  Z-score: 1080.1  bits: 205.5 E(85289): 2e-53
Smith-Waterman score: 818; 98.5% identity (100.0% similar) in 130 aa overlap (1-130:1-130)

               10        20        30        40        50        60
pF1KB4 MSGRGKQGGKARAKAKSRSSRAGLQFPVGRVHRLLRKGNYAERVGAGAPVYLAAVLEYLT
       ::::::::::::::::.:::::::::::::::::::::::::::::::::::::::::::
NP_003 MSGRGKQGGKARAKAKTRSSRAGLQFPVGRVHRLLRKGNYAERVGAGAPVYLAAVLEYLT
               10        20        30        40        50        60

               70        80        90       100       110       120
pF1KB4 AEILELAGNAARDNKKTRIIPRHLQLAIRNDEELNKLLGRVTIAQGGVLPNIQAVLLPKK
       :::::::::::::::::::::::::::::::::::::::.::::::::::::::::::::
NP_003 AEILELAGNAARDNKKTRIIPRHLQLAIRNDEELNKLLGKVTIAQGGVLPNIQAVLLPKK
               70        80        90       100       110       120

              130
pF1KB4 TESHHKAKGK
       ::::::::::
NP_003 TESHHKAKGK
              130

>>NP_003505 (OMIM: 602796) histone H2A type 1 [Homo sapi  (130 aa)
 initn: 818 init1: 818 opt: 818  Z-score: 1080.1  bits: 205.5 E(85289): 2e-53
Smith-Waterman score: 818; 98.5% identity (100.0% similar) in 130 aa overlap (1-130:1-130)

               10        20        30        40        50        60
pF1KB4 MSGRGKQGGKARAKAKSRSSRAGLQFPVGRVHRLLRKGNYAERVGAGAPVYLAAVLEYLT
       ::::::::::::::::.:::::::::::::::::::::::::::::::::::::::::::
NP_003 MSGRGKQGGKARAKAKTRSSRAGLQFPVGRVHRLLRKGNYAERVGAGAPVYLAAVLEYLT
               10        20        30        40        50        60

               70        80        90       100       110       120
pF1KB4 AEILELAGNAARDNKKTRIIPRHLQLAIRNDEELNKLLGRVTIAQGGVLPNIQAVLLPKK
       :::::::::::::::::::::::::::::::::::::::.::::::::::::::::::::
NP_003 AEILELAGNAARDNKKTRIIPRHLQLAIRNDEELNKLLGKVTIAQGGVLPNIQAVLLPKK
               70        80        90       100       110       120

              130
pF1KB4 TESHHKAKGK
       ::::::::::
NP_003 TESHHKAKGK
              130

>>NP_003501 (OMIM: 602788) histone H2A type 1 [Homo sapi  (130 aa)
 initn: 818 init1: 818 opt: 818  Z-score: 1080.1  bits: 205.5 E(85289): 2e-53
Smith-Waterman score: 818; 98.5% identity (100.0% similar) in 130 aa overlap (1-130:1-130)

               10        20        30        40        50        60
pF1KB4 MSGRGKQGGKARAKAKSRSSRAGLQFPVGRVHRLLRKGNYAERVGAGAPVYLAAVLEYLT
       ::::::::::::::::.:::::::::::::::::::::::::::::::::::::::::::
NP_003 MSGRGKQGGKARAKAKTRSSRAGLQFPVGRVHRLLRKGNYAERVGAGAPVYLAAVLEYLT
               10        20        30        40        50        60

               70        80        90       100       110       120
pF1KB4 AEILELAGNAARDNKKTRIIPRHLQLAIRNDEELNKLLGRVTIAQGGVLPNIQAVLLPKK
       :::::::::::::::::::::::::::::::::::::::.::::::::::::::::::::
NP_003 AEILELAGNAARDNKKTRIIPRHLQLAIRNDEELNKLLGKVTIAQGGVLPNIQAVLLPKK
               70        80        90       100       110       120

              130
pF1KB4 TESHHKAKGK
       ::::::::::
NP_003 TESHHKAKGK
              130

>>NP_066390 (OMIM: 602786) histone H2A type 1-B/E [Homo   (130 aa)
 initn: 818 init1: 818 opt: 818  Z-score: 1080.1  bits: 205.5 E(85289): 2e-53
Smith-Waterman score: 818; 98.5% identity (100.0% similar) in 130 aa overlap (1-130:1-130)

               10        20        30        40        50        60
pF1KB4 MSGRGKQGGKARAKAKSRSSRAGLQFPVGRVHRLLRKGNYAERVGAGAPVYLAAVLEYLT
       ::::::::::::::::.:::::::::::::::::::::::.:::::::::::::::::::
NP_066 MSGRGKQGGKARAKAKTRSSRAGLQFPVGRVHRLLRKGNYSERVGAGAPVYLAAVLEYLT
               10        20        30        40        50        60

               70        80        90       100       110       120
pF1KB4 AEILELAGNAARDNKKTRIIPRHLQLAIRNDEELNKLLGRVTIAQGGVLPNIQAVLLPKK
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_066 AEILELAGNAARDNKKTRIIPRHLQLAIRNDEELNKLLGRVTIAQGGVLPNIQAVLLPKK
               70        80        90       100       110       120

              130
pF1KB4 TESHHKAKGK
       ::::::::::
NP_066 TESHHKAKGK
              130

>>NP_066408 (OMIM: 615012) histone H2A type 1 [Homo sapi  (130 aa)
 initn: 818 init1: 818 opt: 818  Z-score: 1080.1  bits: 205.5 E(85289): 2e-53
Smith-Waterman score: 818; 98.5% identity (100.0% similar) in 130 aa overlap (1-130:1-130)

               10        20        30        40        50        60
pF1KB4 MSGRGKQGGKARAKAKSRSSRAGLQFPVGRVHRLLRKGNYAERVGAGAPVYLAAVLEYLT
       ::::::::::::::::.:::::::::::::::::::::::::::::::::::::::::::
NP_066 MSGRGKQGGKARAKAKTRSSRAGLQFPVGRVHRLLRKGNYAERVGAGAPVYLAAVLEYLT
               10        20        30        40        50        60

               70        80        90       100       110       120
pF1KB4 AEILELAGNAARDNKKTRIIPRHLQLAIRNDEELNKLLGRVTIAQGGVLPNIQAVLLPKK
       :::::::::::::::::::::::::::::::::::::::.::::::::::::::::::::
NP_066 AEILELAGNAARDNKKTRIIPRHLQLAIRNDEELNKLLGKVTIAQGGVLPNIQAVLLPKK
               70        80        90       100       110       120

              130
pF1KB4 TESHHKAKGK
       ::::::::::
NP_066 TESHHKAKGK
              130

>>NP_003504 (OMIM: 602795) histone H2A type 1-B/E [Homo   (130 aa)
 initn: 818 init1: 818 opt: 818  Z-score: 1080.1  bits: 205.5 E(85289): 2e-53
Smith-Waterman score: 818; 98.5% identity (100.0% similar) in 130 aa overlap (1-130:1-130)

               10        20        30        40        50        60
pF1KB4 MSGRGKQGGKARAKAKSRSSRAGLQFPVGRVHRLLRKGNYAERVGAGAPVYLAAVLEYLT
       ::::::::::::::::.:::::::::::::::::::::::.:::::::::::::::::::
NP_003 MSGRGKQGGKARAKAKTRSSRAGLQFPVGRVHRLLRKGNYSERVGAGAPVYLAAVLEYLT
               10        20        30        40        50        60

               70        80        90       100       110       120
pF1KB4 AEILELAGNAARDNKKTRIIPRHLQLAIRNDEELNKLLGRVTIAQGGVLPNIQAVLLPKK
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_003 AEILELAGNAARDNKKTRIIPRHLQLAIRNDEELNKLLGRVTIAQGGVLPNIQAVLLPKK
               70        80        90       100       110       120

              130
pF1KB4 TESHHKAKGK
       ::::::::::
NP_003 TESHHKAKGK
              130

>>NP_003502 (OMIM: 602793) histone H2A type 1 [Homo sapi  (130 aa)
 initn: 818 init1: 818 opt: 818  Z-score: 1080.1  bits: 205.5 E(85289): 2e-53
Smith-Waterman score: 818; 98.5% identity (100.0% similar) in 130 aa overlap (1-130:1-130)

               10        20        30        40        50        60
pF1KB4 MSGRGKQGGKARAKAKSRSSRAGLQFPVGRVHRLLRKGNYAERVGAGAPVYLAAVLEYLT
       ::::::::::::::::.:::::::::::::::::::::::::::::::::::::::::::
NP_003 MSGRGKQGGKARAKAKTRSSRAGLQFPVGRVHRLLRKGNYAERVGAGAPVYLAAVLEYLT
               10        20        30        40        50        60

               70        80        90       100       110       120
pF1KB4 AEILELAGNAARDNKKTRIIPRHLQLAIRNDEELNKLLGRVTIAQGGVLPNIQAVLLPKK
       :::::::::::::::::::::::::::::::::::::::.::::::::::::::::::::
NP_003 AEILELAGNAARDNKKTRIIPRHLQLAIRNDEELNKLLGKVTIAQGGVLPNIQAVLLPKK
               70        80        90       100       110       120

              130
pF1KB4 TESHHKAKGK
       ::::::::::
NP_003 TESHHKAKGK
              130




130 residues in 1 query   sequences
60827320 residues in 85289 library sequences
 Tcomplib [36.3.4 Apr, 2011] (8 proc)
 start: Thu Nov  3 14:58:37 2016 done: Thu Nov  3 14:58:38 2016
 Total Scan time:  5.010 Total Display time: -0.020

Function used was FASTA [36.3.4 Apr, 2011]
Inquiries or Suggestions ?
Send a message to flexiclone AT kazusagt.com