Result of FASTA (omim) for pF1KB4371
FASTA searches a protein or DNA sequence data bank 36.3.4 Apr, 2011
Please cite:
W.R. Pearson & D.J. Lipman PNAS (1988) 85:2444-2448

Query: pF1KB4371, 158 aa
  1>>>pF1KB4371 158 - 158 aa - 158 aa
Library: /omim/omim.rfq.tfa
  60827320 residues in 85289 sequences

Statistics:  Expectation_n fit: rho(ln(x))= 5.0110+/-0.000265; mu= 14.2662+/- 0.017
 mean_var=69.7829+/-14.112, 0's: 0 Z-trim(120.3): 10  B-trim: 1547 in 1/51
 Lambda= 0.153532
 statistics sampled from 35467 (35477) to 35467 sequences
Algorithm: FASTA (3.7 Nov 2010) [optimized]
Parameters: BL50 matrix (15:-5), open/ext: -10/-2
 ktup: 2, E-join: 1 (0.788), E-opt: 0.2 (0.416), width:  16
 Scan time:  5.790

The best scores are:                                      opt bits E(85289)
XP_005250509 (OMIM: 604150) PREDICTED: DNA-directe ( 159) 1042 238.7 2.9e-63
XP_016867842 (OMIM: 604150) PREDICTED: DNA-directe ( 116)  683 159.1   2e-39
NP_116581 (OMIM: 609881) DNA-directed RNA polymera ( 115)  671 156.4 1.2e-38
NP_006225 (OMIM: 604150) DNA-directed RNA polymera ( 117)  671 156.5 1.3e-38
NP_057056 (OMIM: 613715,613717) DNA-directed RNA p ( 133)  182 48.2 5.6e-06
XP_005266469 (OMIM: 613715,613717) PREDICTED: DNA- ( 133)  182 48.2 5.6e-06


>>XP_005250509 (OMIM: 604150) PREDICTED: DNA-directed RN  (159 aa)
 initn: 946 init1: 946 opt: 1042  Z-score: 1256.7  bits: 238.7 E(85289): 2.9e-63
Smith-Waterman score: 1042; 98.1% identity (98.1% similar) in 159 aa overlap (1-158:1-159)

               10         20        30        40        50         
pF1KB4 MNAPPAFESFLLFEGEK-ITINKDTKVPNACLFTINKEDHTLGNIIKSQLLKDPQVLFAG
       ::::::::::::::::: ::::::::::::::::::::::::::::::::::::::::::
XP_005 MNAPPAFESFLLFEGEKKITINKDTKVPNACLFTINKEDHTLGNIIKSQLLKDPQVLFAG
               10        20        30        40        50        60

      60        70        80        90       100       110         
pF1KB4 YKVPHPLEHKIIIRVQTTPDYSPQEAFTNAITDLIRELSLLEERFRVRAGPGGADGVGWT
       ::::::::::::::::::::::::::::::::::: ::::::::::::::::::::::::
XP_005 YKVPHPLEHKIIIRVQTTPDYSPQEAFTNAITDLISELSLLEERFRVRAGPGGADGVGWT
               70        80        90       100       110       120

     120       130       140       150        
pF1KB4 LARVPRPGTALACFFGGPQGEAAVMEEQGLPPQAPGHVD
       :::::::::::::::::: ::::::::::::::::::::
XP_005 LARVPRPGTALACFFGGPGGEAAVMEEQGLPPQAPGHVD
              130       140       150         

>>XP_016867842 (OMIM: 604150) PREDICTED: DNA-directed RN  (116 aa)
 initn: 683 init1: 683 opt: 683  Z-score: 828.9  bits: 159.1 E(85289): 2e-39
Smith-Waterman score: 683; 99.1% identity (99.1% similar) in 106 aa overlap (1-106:1-106)

               10        20        30        40        50        60
pF1KB4 MNAPPAFESFLLFEGEKITINKDTKVPNACLFTINKEDHTLGNIIKSQLLKDPQVLFAGY
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_016 MNAPPAFESFLLFEGEKITINKDTKVPNACLFTINKEDHTLGNIIKSQLLKDPQVLFAGY
               10        20        30        40        50        60

               70        80        90       100       110       120
pF1KB4 KVPHPLEHKIIIRVQTTPDYSPQEAFTNAITDLIRELSLLEERFRVRAGPGGADGVGWTL
       :::::::::::::::::::::::::::::::::: :::::::::::              
XP_016 KVPHPLEHKIIIRVQTTPDYSPQEAFTNAITDLISELSLLEERFRVAIKDKQEGIE    
               70        80        90       100       110          

              130       140       150        
pF1KB4 ARVPRPGTALACFFGGPQGEAAVMEEQGLPPQAPGHVD

>>NP_116581 (OMIM: 609881) DNA-directed RNA polymerase I  (115 aa)
 initn: 671 init1: 671 opt: 671  Z-score: 814.5  bits: 156.4 E(85289): 1.2e-38
Smith-Waterman score: 671; 98.1% identity (99.0% similar) in 105 aa overlap (1-105:1-105)

               10        20        30        40        50        60
pF1KB4 MNAPPAFESFLLFEGEKITINKDTKVPNACLFTINKEDHTLGNIIKSQLLKDPQVLFAGY
       :::::::::::::::::::::::::::.::::::::::::::::::::::::::::::::
NP_116 MNAPPAFESFLLFEGEKITINKDTKVPKACLFTINKEDHTLGNIIKSQLLKDPQVLFAGY
               10        20        30        40        50        60

               70        80        90       100       110       120
pF1KB4 KVPHPLEHKIIIRVQTTPDYSPQEAFTNAITDLIRELSLLEERFRVRAGPGGADGVGWTL
       :::::::::::::::::::::::::::::::::: ::::::::::               
NP_116 KVPHPLEHKIIIRVQTTPDYSPQEAFTNAITDLISELSLLEERFRTCLLPLRLLP     
               70        80        90       100       110          

              130       140       150        
pF1KB4 ARVPRPGTALACFFGGPQGEAAVMEEQGLPPQAPGHVD

>>NP_006225 (OMIM: 604150) DNA-directed RNA polymerase I  (117 aa)
 initn: 575 init1: 575 opt: 671  Z-score: 814.4  bits: 156.5 E(85289): 1.3e-38
Smith-Waterman score: 671; 98.1% identity (98.1% similar) in 107 aa overlap (1-106:1-107)

               10         20        30        40        50         
pF1KB4 MNAPPAFESFLLFEGEK-ITINKDTKVPNACLFTINKEDHTLGNIIKSQLLKDPQVLFAG
       ::::::::::::::::: ::::::::::::::::::::::::::::::::::::::::::
NP_006 MNAPPAFESFLLFEGEKKITINKDTKVPNACLFTINKEDHTLGNIIKSQLLKDPQVLFAG
               10        20        30        40        50        60

      60        70        80        90       100       110         
pF1KB4 YKVPHPLEHKIIIRVQTTPDYSPQEAFTNAITDLIRELSLLEERFRVRAGPGGADGVGWT
       ::::::::::::::::::::::::::::::::::: :::::::::::             
NP_006 YKVPHPLEHKIIIRVQTTPDYSPQEAFTNAITDLISELSLLEERFRVAIKDKQEGIE   
               70        80        90       100       110          

     120       130       140       150        
pF1KB4 LARVPRPGTALACFFGGPQGEAAVMEEQGLPPQAPGHVD

>>NP_057056 (OMIM: 613715,613717) DNA-directed RNA polym  (133 aa)
 initn: 182 init1: 164 opt: 182  Z-score: 228.3  bits: 48.2 E(85289): 5.6e-06
Smith-Waterman score: 182; 32.6% identity (65.3% similar) in 95 aa overlap (14-104:20-114)

                     10        20           30         40        50
pF1KB4       MNAPPAFESFLLFEGEKITINKDTKVPNA---CL-FTINKEDHTLGNIIKSQLL
                          :::. :  . ... ..   :. :....::::::: .. ...
NP_057 MEEDQELERKISGLKTSMAEGERKTALEMVQAAGTDRHCVTFVLHEEDHTLGNSLRYMIM
               10        20        30        40        50        60

               60        70        80        90       100       110
pF1KB4 KDPQVLFAGYKVPHPLEHKIIIRVQTTPDYSPQEAFTNAITDLIRELSLLEERFRVRAGP
       :.:.: : :: . :: : :: .:.::       : :  ....:.   . . ..:      
NP_057 KNPEVEFCGYTTTHPSESKINLRIQTRGTLPAVEPFQRGLNELMNVCQHVLDKFEASIKD
               70        80        90       100       110       120

              120       130       140       150        
pF1KB4 GGADGVGWTLARVPRPGTALACFFGGPQGEAAVMEEQGLPPQAPGHVD
                                                       
NP_057 YKDQKASRNESTF                                   
              130                                      

>>XP_005266469 (OMIM: 613715,613717) PREDICTED: DNA-dire  (133 aa)
 initn: 182 init1: 164 opt: 182  Z-score: 228.3  bits: 48.2 E(85289): 5.6e-06
Smith-Waterman score: 182; 32.6% identity (65.3% similar) in 95 aa overlap (14-104:20-114)

                     10        20           30         40        50
pF1KB4       MNAPPAFESFLLFEGEKITINKDTKVPNA---CL-FTINKEDHTLGNIIKSQLL
                          :::. :  . ... ..   :. :....::::::: .. ...
XP_005 MEEDQELERKISGLKTSMAEGERKTALEMVQAAGTDRHCVTFVLHEEDHTLGNSLRYMIM
               10        20        30        40        50        60

               60        70        80        90       100       110
pF1KB4 KDPQVLFAGYKVPHPLEHKIIIRVQTTPDYSPQEAFTNAITDLIRELSLLEERFRVRAGP
       :.:.: : :: . :: : :: .:.::       : :  ....:.   . . ..:      
XP_005 KNPEVEFCGYTTTHPSESKINLRIQTRGTLPAVEPFQRGLNELMNVCQHVLDKFEASIKD
               70        80        90       100       110       120

              120       130       140       150        
pF1KB4 GGADGVGWTLARVPRPGTALACFFGGPQGEAAVMEEQGLPPQAPGHVD
                                                       
XP_005 YKDQKASRNESTF                                   
              130                                      




158 residues in 1 query   sequences
60827320 residues in 85289 library sequences
 Tcomplib [36.3.4 Apr, 2011] (8 proc)
 start: Thu Nov  3 14:51:52 2016 done: Thu Nov  3 14:51:53 2016
 Total Scan time:  5.790 Total Display time: -0.020

Function used was FASTA [36.3.4 Apr, 2011]
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