FASTA searches a protein or DNA sequence data bank 36.3.4 Apr, 2011
Please cite:
W.R. Pearson & D.J. Lipman PNAS (1988) 85:2444-2448

Query: pF1KB4031, 790 aa
  1>>>pF1KB4031 790 - 790 aa - 790 aa
Library: human.CCDS.faa
  18511270 residues in 32554 sequences

Statistics:  Expectation_n fit: rho(ln(x))= 6.3740+/-0.000907; mu= 15.5472+/- 0.055
 mean_var=87.8577+/-17.396, 0's: 0 Z-trim(107.8): 21  B-trim: 163 in 2/49
 Lambda= 0.136831
 statistics sampled from 9791 (9792) to 9791 sequences
Algorithm: FASTA (3.7 Nov 2010) [optimized]
Parameters: BL50 matrix (15:-5), open/ext: -10/-2
 ktup: 2, E-join: 1 (0.658), E-opt: 0.2 (0.301), width:  16
 Scan time:  4.220

The best scores are:                                      opt bits E(32554)
CCDS6728.1 NCBP1 gene_id:4686|Hs108|chr9           ( 790) 5350 1066.5       0


>>CCDS6728.1 NCBP1 gene_id:4686|Hs108|chr9                (790 aa)
 initn: 5350 init1: 5350 opt: 5350  Z-score: 5705.1  bits: 1066.5 E(32554):    0
Smith-Waterman score: 5350; 99.9% identity (100.0% similar) in 790 aa overlap (1-790:1-790)

               10        20        30        40        50        60
pF1KB4 MSRRRHSDENDGGQPHKRRKTSDANETEDHLESLICKVGEKSACSLESNLEGLAGVLEAD
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS67 MSRRRHSDENDGGQPHKRRKTSDANETEDHLESLICKVGEKSACSLESNLEGLAGVLEAD
               10        20        30        40        50        60

               70        80        90       100       110       120
pF1KB4 LPNYKSKILRLLCTVARLLPEKLTIYTTLVGLLNARNYNFGGEFVEAMIRQLKESLKANN
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS67 LPNYKSKILRLLCTVARLLPEKLTIYTTLVGLLNARNYNFGGEFVEAMIRQLKESLKANN
               70        80        90       100       110       120

              130       140       150       160       170       180
pF1KB4 YNEAVYLVRFLSDLVNCHVIAAPSMVAMFENFVSVTQEDDVPQVRRDWYVYAFLSSLPWV
       ::::::::::::::::::::::::::::::::::::::.:::::::::::::::::::::
CCDS67 YNEAVYLVRFLSDLVNCHVIAAPSMVAMFENFVSVTQEEDVPQVRRDWYVYAFLSSLPWV
              130       140       150       160       170       180

              190       200       210       220       230       240
pF1KB4 GKELYEKKDAEMDRIFANTESYLKRRQKTHVPMLQVWTADKPHPQEEYLDCLWAQIQKLK
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS67 GKELYEKKDAEMDRIFANTESYLKRRQKTHVPMLQVWTADKPHPQEEYLDCLWAQIQKLK
              190       200       210       220       230       240

              250       260       270       280       290       300
pF1KB4 KDRWQERHILRPYLAFDSILCEALQHNLPPFTPPPHTEDSVYPMPRVIFRMFDYTDDPEG
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS67 KDRWQERHILRPYLAFDSILCEALQHNLPPFTPPPHTEDSVYPMPRVIFRMFDYTDDPEG
              250       260       270       280       290       300

              310       320       330       340       350       360
pF1KB4 PVMPGSHSVERFVIEENLHCIIKSHWKERKTCAAQLVSYPGKNKIPLNYHIVEVIFAELF
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS67 PVMPGSHSVERFVIEENLHCIIKSHWKERKTCAAQLVSYPGKNKIPLNYHIVEVIFAELF
              310       320       330       340       350       360

              370       380       390       400       410       420
pF1KB4 QLPAPPHIDVMYTTLLIELCKLQPGSLPQVLAQATEMLYMRLDTMNTTCVDRFINWFSHH
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS67 QLPAPPHIDVMYTTLLIELCKLQPGSLPQVLAQATEMLYMRLDTMNTTCVDRFINWFSHH
              370       380       390       400       410       420

              430       440       450       460       470       480
pF1KB4 LSNFQFRWSWEDWSDCLSQDPESPKPKFVREVLEKCMRLSYHQRILDIVPPTFSALCPAN
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS67 LSNFQFRWSWEDWSDCLSQDPESPKPKFVREVLEKCMRLSYHQRILDIVPPTFSALCPAN
              430       440       450       460       470       480

              490       500       510       520       530       540
pF1KB4 PTCIYKYGDESSNSLPGHSVALCLAVAFKSKATNDEIFSILKDVPNPNQDDDDDEGFSFN
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS67 PTCIYKYGDESSNSLPGHSVALCLAVAFKSKATNDEIFSILKDVPNPNQDDDDDEGFSFN
              490       500       510       520       530       540

              550       560       570       580       590       600
pF1KB4 PLKIEVFVQTLLHLAAKSFSHSFSALAKFHEVFKTLAESDEGKLHVLRVMFEVWRNHPQM
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS67 PLKIEVFVQTLLHLAAKSFSHSFSALAKFHEVFKTLAESDEGKLHVLRVMFEVWRNHPQM
              550       560       570       580       590       600

              610       620       630       640       650       660
pF1KB4 IAVLVDKMIRTQIVDCAAVANWIFSSELSRDFTRLFVWEILHSTIRKMNKHVLKIQKELE
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS67 IAVLVDKMIRTQIVDCAAVANWIFSSELSRDFTRLFVWEILHSTIRKMNKHVLKIQKELE
              610       620       630       640       650       660

              670       680       690       700       710       720
pF1KB4 EAKEKLARQHKRRSDDDDRSSDRKDGVLEEQIERLQEKVESAQSEQKNLFLVIFQRFIMI
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS67 EAKEKLARQHKRRSDDDDRSSDRKDGVLEEQIERLQEKVESAQSEQKNLFLVIFQRFIMI
              670       680       690       700       710       720

              730       740       750       760       770       780
pF1KB4 LTEHLVRCETDGTSVLTPWYKNCIERLQQIFLQHHQIIQQYMVTLENLLFTAELDPHILA
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS67 LTEHLVRCETDGTSVLTPWYKNCIERLQQIFLQHHQIIQQYMVTLENLLFTAELDPHILA
              730       740       750       760       770       780

              790
pF1KB4 VFQQFCALQA
       ::::::::::
CCDS67 VFQQFCALQA
              790




790 residues in 1 query   sequences
18511270 residues in 32554 library sequences
 Tcomplib [36.3.4 Apr, 2011] (8 proc)
 start: Thu Nov  3 14:16:21 2016 done: Thu Nov  3 14:16:21 2016
 Total Scan time:  4.220 Total Display time:  0.020

Function used was FASTA [36.3.4 Apr, 2011]