hmmpfam - search one or more sequences against HMM database HMMER 2.3.2 (Oct 2003) Copyright (C) 1992-2003 HHMI/Washington University School of Medicine Freely distributed under the GNU General Public License (GPL) - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - HMM file: /data/Pfam.bin Sequence file: /tmp/20080304/iprscan-20080304-21042692/chunk_1/iprscan-20080304-21042692.nocrc - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query sequence: pF1KB4014 Accession: [none] Description: [none] Scores for sequence family classification (score includes all domains): Model Description Score E-value N -------- ----------- ----- ------- --- PF00096.16.ls Zinc finger, C2H2 type 91.7 2.1e-24 3 PF00096.16.fs Zinc finger, C2H2 type 85.7 1.3e-22 3 Parsed for domains: Model Domain seq-f seq-t hmm-f hmm-t score E-value -------- ------- ----- ----- ----- ----- ----- ------- PF00096.16.fs 1/3 358 382 .. 1 24 [] 25.7 3.6e-05 PF00096.16.ls 1/3 358 382 .. 1 24 [] 27.7 3.7e-05 PF00096.16.fs 2/3 388 412 .. 1 24 [] 31.7 1.2e-06 PF00096.16.ls 2/3 388 412 .. 1 24 [] 33.7 5.9e-07 PF00096.16.fs 3/3 418 440 .. 1 24 [] 28.3 8.6e-06 PF00096.16.ls 3/3 418 440 .. 1 24 [] 30.2 6.6e-06 Alignments of top-scoring domains: PF00096.16.fs: domain 1 of 3, from 358 to 382: score 25.7, E = 3.6e-05 *->ykCpf.dCgksFsrksnLkrHlrtH<-* + C++++Cgk++ +s+Lk+H rtH pF1KB4014 358 HICSHpGCGKTYFKSSHLKAHTRTH 382 PF00096.16.ls: domain 1 of 3, from 358 to 382: score 27.7, E = 3.7e-05 *->ykCpf.dCgksFsrksnLkrHlrtH<-* + C++++Cgk++ +s+Lk+H rtH pF1KB4014 358 HICSHpGCGKTYFKSSHLKAHTRTH 382 PF00096.16.fs: domain 2 of 3, from 388 to 412: score 31.7, E = 1.2e-06 *->ykCpf.dCgksFsrksnLkrHlrtH<-* ++C++++C ++F r+++L rH+rtH pF1KB4014 388 FSCSWkGCERRFARSDELSRHRRTH 412 PF00096.16.ls: domain 2 of 3, from 388 to 412: score 33.7, E = 5.9e-07 *->ykCpf.dCgksFsrksnLkrHlrtH<-* ++C++++C ++F r+++L rH+rtH pF1KB4014 388 FSCSWkGCERRFARSDELSRHRRTH 412 PF00096.16.fs: domain 3 of 3, from 418 to 440: score 28.3, E = 8.6e-06 *->ykCpfdCgksFsrksnLkrHlrtH<-* + Cp C+++F r+++L++H r+H pF1KB4014 418 FACP-MCDRRFMRSDHLTKHARRH 440 PF00096.16.ls: domain 3 of 3, from 418 to 440: score 30.2, E = 6.6e-06 *->ykCpfdCgksFsrksnLkrHlrtH<-* + Cp C+++F r+++L++H r+H pF1KB4014 418 FACP-MCDRRFMRSDHLTKHARRH 440 //