Result of FASTA (ccds) for pF1KB3707
FASTA searches a protein or DNA sequence data bank 36.3.4 Apr, 2011
Please cite:
W.R. Pearson & D.J. Lipman PNAS (1988) 85:2444-2448

Query: pF1KB3707, 999 aa
  1>>>pF1KB3707 999 - 999 aa - 999 aa
Library: human.CCDS.faa
  18511270 residues in 32554 sequences

Statistics:  Expectation_n fit: rho(ln(x))= 9.8996+/-0.00112; mu= 1.6535+/- 0.068
 mean_var=247.0204+/-48.695, 0's: 0 Z-trim(110.8): 28  B-trim: 0 in 0/53
 Lambda= 0.081603
 statistics sampled from 11893 (11914) to 11893 sequences
Algorithm: FASTA (3.7 Nov 2010) [optimized]
Parameters: BL50 matrix (15:-5), open/ext: -10/-2
 ktup: 2, E-join: 1 (0.692), E-opt: 0.2 (0.366), width:  16
 Scan time:  4.940

The best scores are:                                      opt bits E(32554)
CCDS8408.1 HYOU1 gene_id:10525|Hs108|chr11         ( 999) 6453 773.7       0
CCDS73559.1 HSPH1 gene_id:10808|Hs108|chr13        ( 782)  463 68.4 6.5e-11


>>CCDS8408.1 HYOU1 gene_id:10525|Hs108|chr11              (999 aa)
 initn: 6453 init1: 6453 opt: 6453  Z-score: 4119.1  bits: 773.7 E(32554):    0
Smith-Waterman score: 6453; 100.0% identity (100.0% similar) in 999 aa overlap (1-999:1-999)

               10        20        30        40        50        60
pF1KB3 MADKVRRQRPRRRVCWALVAVLLADLLALSDTLAVMSVDLGSESMKVAIVKPGVPMEIVL
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS84 MADKVRRQRPRRRVCWALVAVLLADLLALSDTLAVMSVDLGSESMKVAIVKPGVPMEIVL
               10        20        30        40        50        60

               70        80        90       100       110       120
pF1KB3 NKESRRKTPVIVTLKENERFFGDSAASMAIKNPKATLRYFQHLLGKQADNPHVALYQARF
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS84 NKESRRKTPVIVTLKENERFFGDSAASMAIKNPKATLRYFQHLLGKQADNPHVALYQARF
               70        80        90       100       110       120

              130       140       150       160       170       180
pF1KB3 PEHELTFDPQRQTVHFQISSQLQFSPEEVLGMVLNYSRSLAEDFAEQPIKDAVITVPVFF
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS84 PEHELTFDPQRQTVHFQISSQLQFSPEEVLGMVLNYSRSLAEDFAEQPIKDAVITVPVFF
              130       140       150       160       170       180

              190       200       210       220       230       240
pF1KB3 NQAERRAVLQAARMAGLKVLQLINDNTATALSYGVFRRKDINTTAQNIMFYDMGSGSTVC
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS84 NQAERRAVLQAARMAGLKVLQLINDNTATALSYGVFRRKDINTTAQNIMFYDMGSGSTVC
              190       200       210       220       230       240

              250       260       270       280       290       300
pF1KB3 TIVTYQMVKTKEAGMQPQLQIRGVGFDRTLGGLEMELRLRERLAGLFNEQRKGQRAKDVR
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS84 TIVTYQMVKTKEAGMQPQLQIRGVGFDRTLGGLEMELRLRERLAGLFNEQRKGQRAKDVR
              250       260       270       280       290       300

              310       320       330       340       350       360
pF1KB3 ENPRAMAKLLREANRLKTVLSANADHMAQIEGLMDDVDFKAKVTRVEFEELCADLFERVP
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS84 ENPRAMAKLLREANRLKTVLSANADHMAQIEGLMDDVDFKAKVTRVEFEELCADLFERVP
              310       320       330       340       350       360

              370       380       390       400       410       420
pF1KB3 GPVQQALQSAEMSLDEIEQVILVGGATRVPRVQEVLLKAVGKEELGKNINADEAAAMGAV
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS84 GPVQQALQSAEMSLDEIEQVILVGGATRVPRVQEVLLKAVGKEELGKNINADEAAAMGAV
              370       380       390       400       410       420

              430       440       450       460       470       480
pF1KB3 YQAAALSKAFKVKPFVVRDAVVYPILVEFTREVEEEPGIHSLKHNKRVLFSRMGPYPQRK
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS84 YQAAALSKAFKVKPFVVRDAVVYPILVEFTREVEEEPGIHSLKHNKRVLFSRMGPYPQRK
              430       440       450       460       470       480

              490       500       510       520       530       540
pF1KB3 VITFNRYSHDFNFHINYGDLGFLGPEDLRVFGSQNLTTVKLKGVGDSFKKYPDYESKGIK
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS84 VITFNRYSHDFNFHINYGDLGFLGPEDLRVFGSQNLTTVKLKGVGDSFKKYPDYESKGIK
              490       500       510       520       530       540

              550       560       570       580       590       600
pF1KB3 AHFNLDESGVLSLDRVESVFETLVEDSAEEESTLTKLGNTISSLFGGGTTPDAKENGTDT
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS84 AHFNLDESGVLSLDRVESVFETLVEDSAEEESTLTKLGNTISSLFGGGTTPDAKENGTDT
              550       560       570       580       590       600

              610       620       630       640       650       660
pF1KB3 VQEEEESPAEGSKDEPGEQVELKEEAEAPVEDGSQPPPPEPKGDATPEGEKATEKENGDK
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS84 VQEEEESPAEGSKDEPGEQVELKEEAEAPVEDGSQPPPPEPKGDATPEGEKATEKENGDK
              610       620       630       640       650       660

              670       680       690       700       710       720
pF1KB3 SEAQKPSEKAEAGPEGVAPAPEGEKKQKPARKRRMVEEIGVELVVLDLPDLPEDKLAQSV
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS84 SEAQKPSEKAEAGPEGVAPAPEGEKKQKPARKRRMVEEIGVELVVLDLPDLPEDKLAQSV
              670       680       690       700       710       720

              730       740       750       760       770       780
pF1KB3 QKLQDLTLRDLEKQEREKAANSLEAFIFETQDKLYQPEYQEVSTEEQREEISGKLSAAST
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS84 QKLQDLTLRDLEKQEREKAANSLEAFIFETQDKLYQPEYQEVSTEEQREEISGKLSAAST
              730       740       750       760       770       780

              790       800       810       820       830       840
pF1KB3 WLEDEGVGATTVMLKEKLAELRKLCQGLFFRVEERKKWPERLSALDNLLNHSSMFLKGAR
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS84 WLEDEGVGATTVMLKEKLAELRKLCQGLFFRVEERKKWPERLSALDNLLNHSSMFLKGAR
              790       800       810       820       830       840

              850       860       870       880       890       900
pF1KB3 LIPEMDQIFTEVEMTTLEKVINETWAWKNATLAEQAKLPATEKPVLLSKDIEAKMMALDR
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS84 LIPEMDQIFTEVEMTTLEKVINETWAWKNATLAEQAKLPATEKPVLLSKDIEAKMMALDR
              850       860       870       880       890       900

              910       920       930       940       950       960
pF1KB3 EVQYLLNKAKFTKPRPRPKDKNGTRAEPPLNASASDQGEKVIPPAGQTEDAEPISEPEKV
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS84 EVQYLLNKAKFTKPRPRPKDKNGTRAEPPLNASASDQGEKVIPPAGQTEDAEPISEPEKV
              910       920       930       940       950       960

              970       980       990         
pF1KB3 ETGSEPGDTEPLELGGPGAEPEQKEQSTGQKRPLKNDEL
       :::::::::::::::::::::::::::::::::::::::
CCDS84 ETGSEPGDTEPLELGGPGAEPEQKEQSTGQKRPLKNDEL
              970       980       990         

>>CCDS73559.1 HSPH1 gene_id:10808|Hs108|chr13             (782 aa)
 initn: 469 init1: 205 opt: 463  Z-score: 309.4  bits: 68.4 E(32554): 6.5e-11
Smith-Waterman score: 760; 27.9% identity (56.5% similar) in 703 aa overlap (259-940:144-774)

      230       240       250       260       270       280        
pF1KB3 MFYDMGSGSTVCTIVTYQMVKTKEAGMQPQLQIRGVGFDRTLGGLEMELRLRERLAGLFN
                                     ... :..::  ::: ... .: :.. . :.
CCDS73 FSVEQITAMLLTKLKETAENSLKKPVTDCVISVLGTAFDPFLGGKNFDEKLVEHFCAEFK
           120       130       140       150       160       170   

      290       300       310       320        330       340       
pF1KB3 EQRKGQRAKDVRENPRAMAKLLREANRLKTVLSANADHMA-QIEGLMDDVDFKAKVTRVE
        . :     :.. . ::. .: .: ..:: ..:.:.  .  .:: .:.: : ..:..: .
CCDS73 TKYK----LDAKSKIRALLRLYQECEKLKKLMSSNSTDLPLNIECFMNDKDVSGKMNRSQ
               180       190       200       210       220         

       350       360       370       380       390       400       
pF1KB3 FEELCADLFERVPGPVQQALQSAEMSLDEIEQVILVGGATRVPRVQEVLLKAVGKEELGK
       ::::::.:....  :. . :..........  : .::::::.: :.: . :  ::. .. 
CCDS73 FEELCAELLQKIEVPLYSLLEQTHLKVEDVSAVEIVGGATRIPAVKERIAKFFGKD-IST
     230       240       250       260       270       280         

       410       420       430       440       450       460       
pF1KB3 NINADEAAAMGAVYQAAALSKAFKVKPFVVRDAVVYPILVEFTREVEEEPGIHSLKHNKR
       ..:::::.: : . : : :: ::::. : : ::: .:: . .... :.  :.: .     
CCDS73 TLNADEAVARGCALQCAILSPAFKVREFSVTDAVPFPISLIWNHDSEDTEGVHEV-----
      290       300       310       320       330       340        

       470       480       490        500        510       520     
pF1KB3 VLFSRMGPYPQRKVITFNRYSHDFNFHINYGD-LGFLGPE-DLRVFGSQNLTTVKLKGVG
         :::    :  ::.:: : .  :...  :.:  :   ::  .  :  ::... :     
CCDS73 --FSRNHAAPFSKVLTFLRRG-PFELEAFYSDPQGVPYPEAKIGRFVVQNVSAQK-----
             350       360        370       380       390          

         530       540       550       560       570       580     
pF1KB3 DSFKKYPDYESKGIKAHFNLDESGVLSLDRVESVFETLVEDSAEEESTLTKLGNTISSLF
              : :.. .:..  ..  :..... .     ..::    ::. ... ..      
CCDS73 -------DGEKSRVKVKVRVNTHGIFTISTA-----SMVEKVPTEENEMSSEADMECLNQ
                400       410            420       430       440   

         590       600       610       620       630       640     
pF1KB3 GGGTTPDAKENGTDTVQEEEESPAEGSKDEPGEQVELKEEAEAPVEDGSQPPPPE--PKG
           .::. .:    ::...        .: : : ... .:.   . ...:: ::   . 
CCDS73 RPPENPDTDKN----VQQDN--------SEAGTQPQVQTDAQ---QTSQSPPSPELTSEE
           450                   460       470          480        

           650       660       670       680       690       700   
pF1KB3 DATPEGEKATEKENGDKSEAQKPSEKAEAGPEGVAPAPEGEKKQKPARKRRMVEEIGVEL
       .  :...::.::.  .  ::.::. :.              . . : .   .: ..: .:
CCDS73 NKIPDADKANEKKVDQPPEAKKPKIKVV-------------NVELPIEAN-LVWQLGKDL
      490       500       510                    520        530    

           710       720       730       740       750       760   
pF1KB3 VVLDLPDLPEDKLAQSVQKLQDLTLRDLEKQEREKAANSLEAFIFETQDKLYQPEYQEVS
         :..    : :.      .::     ::: ::. : :..: ...: .:::  : :..  
CCDS73 --LNMYIETEGKMI-----MQD----KLEK-ERNDAKNAVEEYVYEFRDKLCGP-YEKFI
            540                550        560       570        580 

           770       780       790       800       810       820   
pF1KB3 TEEQREEISGKLSAASTWLEDEGVGATTVMLKEKLAELRKLCQGLFFRVEERKKWPERLS
        :......   :. .  :: .::   .     .:: :: :.   .  : .: .. :. . 
CCDS73 CEQDHQNFLRLLTETEDWLYEEGEDQAKQAYVDKLEELMKIGTPVKVRFQEAEERPKMFE
             590       600       610       620       630       640 

           830       840       850       860       870       880   
pF1KB3 ALDNLLNHSSMFLKGARLIPEMDQIFTEVEMTTLEKVINETWAWKNATLAEQAKLPATEK
        : . :.: . .    :   :  . . : ::  .:: .::.  : : ..  :::    . 
CCDS73 ELGQRLQHYAKIAADFRNKDEKYNHIDESEMKKVEKSVNEVMEWMNNVMNAQAKKSLDQD
             650       660       670       680       690       700 

           890       900         910                     920       
pF1KB3 PVLLSKDIEAKMMALDREVQYLLN--KAKFTKPR----PR-P---------KDKNGTRAE
       ::. ...:..:.  :.   . ...  : :. .:.    :  :         .:::.  ::
CCDS73 PVVRAQEIKTKIKELNNTCEPVVTQPKPKIESPKLERTPNGPNIDKKEEDLEDKNNFGAE
             710       720       730       740       750       760 

       930       940       950       960       970       980       
pF1KB3 PPLNASASDQGEKVIPPAGQTEDAEPISEPEKVETGSEPGDTEPLELGGPGAEPEQKEQS
       :: . .    .::                                               
CCDS73 PPHQNGECYPNEKNSVNMDLD                                       
             770       780                                         




999 residues in 1 query   sequences
18511270 residues in 32554 library sequences
 Tcomplib [36.3.4 Apr, 2011] (8 proc)
 start: Thu Nov  3 13:46:34 2016 done: Thu Nov  3 13:46:35 2016
 Total Scan time:  4.940 Total Display time:  0.070

Function used was FASTA [36.3.4 Apr, 2011]
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