Result of FASTA (ccds) for pF1KB3312
FASTA searches a protein or DNA sequence data bank 36.3.4 Apr, 2011
Please cite:
W.R. Pearson & D.J. Lipman PNAS (1988) 85:2444-2448

Query: pF1KB3312, 824 aa
  1>>>pF1KB3312 824 - 824 aa - 824 aa
Library: human.CCDS.faa
  18511270 residues in 32554 sequences

Statistics:  Expectation_n fit: rho(ln(x))= 9.7265+/-0.00118; mu= -0.6632+/- 0.070
 mean_var=192.4522+/-39.077, 0's: 0 Z-trim(107.3): 46  B-trim: 7 in 1/51
 Lambda= 0.092451
 statistics sampled from 9456 (9482) to 9456 sequences
Algorithm: FASTA (3.7 Nov 2010) [optimized]
Parameters: BL50 matrix (15:-5), open/ext: -10/-2
 ktup: 2, E-join: 1 (0.637), E-opt: 0.2 (0.291), width:  16
 Scan time:  4.400

The best scores are:                                      opt bits E(32554)
CCDS11509.1 CDC27 gene_id:996|Hs108|chr17          ( 824) 5442 739.2 6.6e-213
CCDS74090.1 CDC27 gene_id:996|Hs108|chr17          ( 823) 5424 736.8 3.5e-212
CCDS45720.1 CDC27 gene_id:996|Hs108|chr17          ( 830) 5420 736.3 5.1e-212


>>CCDS11509.1 CDC27 gene_id:996|Hs108|chr17               (824 aa)
 initn: 5442 init1: 5442 opt: 5442  Z-score: 3935.8  bits: 739.2 E(32554): 6.6e-213
Smith-Waterman score: 5442; 100.0% identity (100.0% similar) in 824 aa overlap (1-824:1-824)

               10        20        30        40        50        60
pF1KB3 MTVLQEPVQAAIWQALNHYAYRDAVFLAERLYAEVHSEEALFLLATCYYRSGKAYKAYRL
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS11 MTVLQEPVQAAIWQALNHYAYRDAVFLAERLYAEVHSEEALFLLATCYYRSGKAYKAYRL
               10        20        30        40        50        60

               70        80        90       100       110       120
pF1KB3 LKGHSCTTPQCKYLLAKCCVDLSKLAEGEQILSGGVFNKQKSHDDIVTEFGDSACFTLSL
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS11 LKGHSCTTPQCKYLLAKCCVDLSKLAEGEQILSGGVFNKQKSHDDIVTEFGDSACFTLSL
               70        80        90       100       110       120

              130       140       150       160       170       180
pF1KB3 LGHVYCKTDRLAKGSECYQKSLSLNPFLWSPFESLCEIGEKPDPDQTFKFTSLQNFSNCL
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS11 LGHVYCKTDRLAKGSECYQKSLSLNPFLWSPFESLCEIGEKPDPDQTFKFTSLQNFSNCL
              130       140       150       160       170       180

              190       200       210       220       230       240
pF1KB3 PNSCTTQVPNHSLSHRQPETVLTETPQDTIELNRLNLESSNSKYSLNTDSSVSYIDSAVI
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS11 PNSCTTQVPNHSLSHRQPETVLTETPQDTIELNRLNLESSNSKYSLNTDSSVSYIDSAVI
              190       200       210       220       230       240

              250       260       270       280       290       300
pF1KB3 SPDTVPLGTGTSILSKQVQNKPKTGRSLLGGPAALSPLTPSFGILPLETPSPGDGSYLQN
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS11 SPDTVPLGTGTSILSKQVQNKPKTGRSLLGGPAALSPLTPSFGILPLETPSPGDGSYLQN
              250       260       270       280       290       300

              310       320       330       340       350       360
pF1KB3 YTNTPPVIDVPSTGAPSKKSVARIGQTGTKSVFSQSGNSREVTPILAQTQSSGPQTSTTP
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS11 YTNTPPVIDVPSTGAPSKKSVARIGQTGTKSVFSQSGNSREVTPILAQTQSSGPQTSTTP
              310       320       330       340       350       360

              370       380       390       400       410       420
pF1KB3 QVLSPTITSPPNALPRRSSRLFTSDSSTTKENSKKLKMKFPPKIPNRKTKSKTNKGGITQ
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS11 QVLSPTITSPPNALPRRSSRLFTSDSSTTKENSKKLKMKFPPKIPNRKTKSKTNKGGITQ
              370       380       390       400       410       420

              430       440       450       460       470       480
pF1KB3 PNINDSLEITKLDSSIISEGKISTITPQIQAFNLQKAAAEGLMSLLREMGKGYLALCSYN
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS11 PNINDSLEITKLDSSIISEGKISTITPQIQAFNLQKAAAEGLMSLLREMGKGYLALCSYN
              430       440       450       460       470       480

              490       500       510       520       530       540
pF1KB3 CKEAINILSHLPSHHYNTGWVLCQIGRAYFELSEYMQAERIFSEVRRIENYRVEGMEIYS
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS11 CKEAINILSHLPSHHYNTGWVLCQIGRAYFELSEYMQAERIFSEVRRIENYRVEGMEIYS
              490       500       510       520       530       540

              550       560       570       580       590       600
pF1KB3 TTLWHLQKDVALSVLSKDLTDMDKNSPEAWCAAGNCFSLQREHDIAIKFFQRAIQVDPNY
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS11 TTLWHLQKDVALSVLSKDLTDMDKNSPEAWCAAGNCFSLQREHDIAIKFFQRAIQVDPNY
              550       560       570       580       590       600

              610       620       630       640       650       660
pF1KB3 AYAYTLLGHEFVLTEELDKALACFRNAIRVNPRHYNAWYGLGMIYYKQEKFSLAEMHFQK
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS11 AYAYTLLGHEFVLTEELDKALACFRNAIRVNPRHYNAWYGLGMIYYKQEKFSLAEMHFQK
              610       620       630       640       650       660

              670       680       690       700       710       720
pF1KB3 ALDINPQSSVLLCHIGVVQHALKKSEKALDTLNKAIVIDPKNPLCKFHRASVLFANEKYK
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS11 ALDINPQSSVLLCHIGVVQHALKKSEKALDTLNKAIVIDPKNPLCKFHRASVLFANEKYK
              670       680       690       700       710       720

              730       740       750       760       770       780
pF1KB3 SALQELEELKQIVPKESLVYFLIGKVYKKLGQTHLALMNFSWAMDLDPKGANNQIKEAID
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS11 SALQELEELKQIVPKESLVYFLIGKVYKKLGQTHLALMNFSWAMDLDPKGANNQIKEAID
              730       740       750       760       770       780

              790       800       810       820    
pF1KB3 KRYLPDDEEPITQEEQIMGTDESQESSMTDADDTQLHAAESDEF
       ::::::::::::::::::::::::::::::::::::::::::::
CCDS11 KRYLPDDEEPITQEEQIMGTDESQESSMTDADDTQLHAAESDEF
              790       800       810       820    

>>CCDS74090.1 CDC27 gene_id:996|Hs108|chr17               (823 aa)
 initn: 3163 init1: 3006 opt: 5424  Z-score: 3922.9  bits: 736.8 E(32554): 3.5e-212
Smith-Waterman score: 5424; 99.9% identity (99.9% similar) in 824 aa overlap (1-824:1-823)

               10        20        30        40        50        60
pF1KB3 MTVLQEPVQAAIWQALNHYAYRDAVFLAERLYAEVHSEEALFLLATCYYRSGKAYKAYRL
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS74 MTVLQEPVQAAIWQALNHYAYRDAVFLAERLYAEVHSEEALFLLATCYYRSGKAYKAYRL
               10        20        30        40        50        60

               70        80        90       100       110       120
pF1KB3 LKGHSCTTPQCKYLLAKCCVDLSKLAEGEQILSGGVFNKQKSHDDIVTEFGDSACFTLSL
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS74 LKGHSCTTPQCKYLLAKCCVDLSKLAEGEQILSGGVFNKQKSHDDIVTEFGDSACFTLSL
               70        80        90       100       110       120

              130       140       150       160       170       180
pF1KB3 LGHVYCKTDRLAKGSECYQKSLSLNPFLWSPFESLCEIGEKPDPDQTFKFTSLQNFSNCL
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS74 LGHVYCKTDRLAKGSECYQKSLSLNPFLWSPFESLCEIGEKPDPDQTFKFTSLQNFSNCL
              130       140       150       160       170       180

              190       200       210       220       230       240
pF1KB3 PNSCTTQVPNHSLSHRQPETVLTETPQDTIELNRLNLESSNSKYSLNTDSSVSYIDSAVI
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS74 PNSCTTQVPNHSLSHRQPETVLTETPQDTIELNRLNLESSNSKYSLNTDSSVSYIDSAVI
              190       200       210       220       230       240

              250       260       270       280       290       300
pF1KB3 SPDTVPLGTGTSILSKQVQNKPKTGRSLLGGPAALSPLTPSFGILPLETPSPGDGSYLQN
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS74 SPDTVPLGTGTSILSKQVQNKPKTGRSLLGGPAALSPLTPSFGILPLETPSPGDGSYLQN
              250       260       270       280       290       300

              310       320       330       340       350       360
pF1KB3 YTNTPPVIDVPSTGAPSKKSVARIGQTGTKSVFSQSGNSREVTPILAQTQSSGPQTSTTP
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS74 YTNTPPVIDVPSTGAPSKKSVARIGQTGTKSVFSQSGNSREVTPILAQTQSSGPQTSTTP
              310       320       330       340       350       360

              370       380       390       400       410       420
pF1KB3 QVLSPTITSPPNALPRRSSRLFTSDSSTTKENSKKLKMKFPPKIPNRKTKSKTNKGGITQ
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS74 QVLSPTITSPPNALPRRSSRLFTSDSSTTKENSKKLKMKFPPKIPNRKTKSKTNKGGITQ
              370       380       390       400       410       420

              430       440       450       460       470       480
pF1KB3 PNINDSLEITKLDSSIISEGKISTITPQIQAFNLQKAAAEGLMSLLREMGKGYLALCSYN
       ::::::::::::::::::::::::::::::::::::::: ::::::::::::::::::::
CCDS74 PNINDSLEITKLDSSIISEGKISTITPQIQAFNLQKAAA-GLMSLLREMGKGYLALCSYN
              430       440       450        460       470         

              490       500       510       520       530       540
pF1KB3 CKEAINILSHLPSHHYNTGWVLCQIGRAYFELSEYMQAERIFSEVRRIENYRVEGMEIYS
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS74 CKEAINILSHLPSHHYNTGWVLCQIGRAYFELSEYMQAERIFSEVRRIENYRVEGMEIYS
     480       490       500       510       520       530         

              550       560       570       580       590       600
pF1KB3 TTLWHLQKDVALSVLSKDLTDMDKNSPEAWCAAGNCFSLQREHDIAIKFFQRAIQVDPNY
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS74 TTLWHLQKDVALSVLSKDLTDMDKNSPEAWCAAGNCFSLQREHDIAIKFFQRAIQVDPNY
     540       550       560       570       580       590         

              610       620       630       640       650       660
pF1KB3 AYAYTLLGHEFVLTEELDKALACFRNAIRVNPRHYNAWYGLGMIYYKQEKFSLAEMHFQK
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS74 AYAYTLLGHEFVLTEELDKALACFRNAIRVNPRHYNAWYGLGMIYYKQEKFSLAEMHFQK
     600       610       620       630       640       650         

              670       680       690       700       710       720
pF1KB3 ALDINPQSSVLLCHIGVVQHALKKSEKALDTLNKAIVIDPKNPLCKFHRASVLFANEKYK
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS74 ALDINPQSSVLLCHIGVVQHALKKSEKALDTLNKAIVIDPKNPLCKFHRASVLFANEKYK
     660       670       680       690       700       710         

              730       740       750       760       770       780
pF1KB3 SALQELEELKQIVPKESLVYFLIGKVYKKLGQTHLALMNFSWAMDLDPKGANNQIKEAID
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS74 SALQELEELKQIVPKESLVYFLIGKVYKKLGQTHLALMNFSWAMDLDPKGANNQIKEAID
     720       730       740       750       760       770         

              790       800       810       820    
pF1KB3 KRYLPDDEEPITQEEQIMGTDESQESSMTDADDTQLHAAESDEF
       ::::::::::::::::::::::::::::::::::::::::::::
CCDS74 KRYLPDDEEPITQEEQIMGTDESQESSMTDADDTQLHAAESDEF
     780       790       800       810       820   

>>CCDS45720.1 CDC27 gene_id:996|Hs108|chr17               (830 aa)
 initn: 3308 init1: 3308 opt: 5420  Z-score: 3919.9  bits: 736.3 E(32554): 5.1e-212
Smith-Waterman score: 5420; 99.3% identity (99.3% similar) in 830 aa overlap (1-824:1-830)

               10        20        30        40        50        60
pF1KB3 MTVLQEPVQAAIWQALNHYAYRDAVFLAERLYAEVHSEEALFLLATCYYRSGKAYKAYRL
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS45 MTVLQEPVQAAIWQALNHYAYRDAVFLAERLYAEVHSEEALFLLATCYYRSGKAYKAYRL
               10        20        30        40        50        60

               70        80        90       100       110       120
pF1KB3 LKGHSCTTPQCKYLLAKCCVDLSKLAEGEQILSGGVFNKQKSHDDIVTEFGDSACFTLSL
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS45 LKGHSCTTPQCKYLLAKCCVDLSKLAEGEQILSGGVFNKQKSHDDIVTEFGDSACFTLSL
               70        80        90       100       110       120

              130       140       150       160       170       180
pF1KB3 LGHVYCKTDRLAKGSECYQKSLSLNPFLWSPFESLCEIGEKPDPDQTFKFTSLQNFSNCL
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS45 LGHVYCKTDRLAKGSECYQKSLSLNPFLWSPFESLCEIGEKPDPDQTFKFTSLQNFSNCL
              130       140       150       160       170       180

              190       200       210       220       230       240
pF1KB3 PNSCTTQVPNHSLSHRQPETVLTETPQDTIELNRLNLESSNSKYSLNTDSSVSYIDSAVI
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS45 PNSCTTQVPNHSLSHRQPETVLTETPQDTIELNRLNLESSNSKYSLNTDSSVSYIDSAVI
              190       200       210       220       230       240

              250       260       270       280       290       300
pF1KB3 SPDTVPLGTGTSILSKQVQNKPKTGRSLLGGPAALSPLTPSFGILPLETPSPGDGSYLQN
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS45 SPDTVPLGTGTSILSKQVQNKPKTGRSLLGGPAALSPLTPSFGILPLETPSPGDGSYLQN
              250       260       270       280       290       300

              310             320       330       340       350    
pF1KB3 YTNTPPVIDVPSTGAPSKK------SVARIGQTGTKSVFSQSGNSREVTPILAQTQSSGP
       :::::::::::::::::::      :::::::::::::::::::::::::::::::::::
CCDS45 YTNTPPVIDVPSTGAPSKKTFRVLQSVARIGQTGTKSVFSQSGNSREVTPILAQTQSSGP
              310       320       330       340       350       360

          360       370       380       390       400       410    
pF1KB3 QTSTTPQVLSPTITSPPNALPRRSSRLFTSDSSTTKENSKKLKMKFPPKIPNRKTKSKTN
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS45 QTSTTPQVLSPTITSPPNALPRRSSRLFTSDSSTTKENSKKLKMKFPPKIPNRKTKSKTN
              370       380       390       400       410       420

          420       430       440       450       460       470    
pF1KB3 KGGITQPNINDSLEITKLDSSIISEGKISTITPQIQAFNLQKAAAEGLMSLLREMGKGYL
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS45 KGGITQPNINDSLEITKLDSSIISEGKISTITPQIQAFNLQKAAAEGLMSLLREMGKGYL
              430       440       450       460       470       480

          480       490       500       510       520       530    
pF1KB3 ALCSYNCKEAINILSHLPSHHYNTGWVLCQIGRAYFELSEYMQAERIFSEVRRIENYRVE
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS45 ALCSYNCKEAINILSHLPSHHYNTGWVLCQIGRAYFELSEYMQAERIFSEVRRIENYRVE
              490       500       510       520       530       540

          540       550       560       570       580       590    
pF1KB3 GMEIYSTTLWHLQKDVALSVLSKDLTDMDKNSPEAWCAAGNCFSLQREHDIAIKFFQRAI
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS45 GMEIYSTTLWHLQKDVALSVLSKDLTDMDKNSPEAWCAAGNCFSLQREHDIAIKFFQRAI
              550       560       570       580       590       600

          600       610       620       630       640       650    
pF1KB3 QVDPNYAYAYTLLGHEFVLTEELDKALACFRNAIRVNPRHYNAWYGLGMIYYKQEKFSLA
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS45 QVDPNYAYAYTLLGHEFVLTEELDKALACFRNAIRVNPRHYNAWYGLGMIYYKQEKFSLA
              610       620       630       640       650       660

          660       670       680       690       700       710    
pF1KB3 EMHFQKALDINPQSSVLLCHIGVVQHALKKSEKALDTLNKAIVIDPKNPLCKFHRASVLF
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS45 EMHFQKALDINPQSSVLLCHIGVVQHALKKSEKALDTLNKAIVIDPKNPLCKFHRASVLF
              670       680       690       700       710       720

          720       730       740       750       760       770    
pF1KB3 ANEKYKSALQELEELKQIVPKESLVYFLIGKVYKKLGQTHLALMNFSWAMDLDPKGANNQ
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS45 ANEKYKSALQELEELKQIVPKESLVYFLIGKVYKKLGQTHLALMNFSWAMDLDPKGANNQ
              730       740       750       760       770       780

          780       790       800       810       820    
pF1KB3 IKEAIDKRYLPDDEEPITQEEQIMGTDESQESSMTDADDTQLHAAESDEF
       ::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS45 IKEAIDKRYLPDDEEPITQEEQIMGTDESQESSMTDADDTQLHAAESDEF
              790       800       810       820       830




824 residues in 1 query   sequences
18511270 residues in 32554 library sequences
 Tcomplib [36.3.4 Apr, 2011] (8 proc)
 start: Thu Nov  3 12:48:22 2016 done: Thu Nov  3 12:48:23 2016
 Total Scan time:  4.400 Total Display time:  0.090

Function used was FASTA [36.3.4 Apr, 2011]
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