Result of FASTA (omim) for pF1KB3294
FASTA searches a protein or DNA sequence data bank 36.3.4 Apr, 2011
Please cite:
W.R. Pearson & D.J. Lipman PNAS (1988) 85:2444-2448

Query: pF1KB3294, 950 aa
  1>>>pF1KB3294 950 - 950 aa - 950 aa
Library: /omim/omim.rfq.tfa
  60827320 residues in 85289 sequences

Statistics:  Expectation_n fit: rho(ln(x))= 7.4460+/-0.000427; mu= 11.1299+/- 0.026
 mean_var=128.0949+/-25.988, 0's: 0 Z-trim(115.6): 415  B-trim: 2178 in 2/53
 Lambda= 0.113320
 statistics sampled from 25666 (26132) to 25666 sequences
Algorithm: FASTA (3.7 Nov 2010) [optimized]
Parameters: BL50 matrix (15:-5), open/ext: -10/-2
 ktup: 2, E-join: 1 (0.643), E-opt: 0.2 (0.306), width:  16
 Scan time: 14.160

The best scores are:                                      opt bits E(85289)
NP_061723 (OMIM: 606307) protocadherin alpha-1 iso ( 950) 6178 1022.2       0
NP_113598 (OMIM: 606307) protocadherin alpha-1 iso ( 807) 5133 851.3       0
NP_061728 (OMIM: 606308) protocadherin alpha-2 iso ( 948) 5111 847.7       0
NP_061729 (OMIM: 606309) protocadherin alpha-3 iso ( 950) 5078 842.3       0
NP_061734 (OMIM: 606314) protocadherin alpha-8 iso ( 950) 5066 840.4       0
NP_061730 (OMIM: 606310) protocadherin alpha-4 iso ( 947) 5033 835.0       0
NP_061732 (OMIM: 606312) protocadherin alpha-6 iso ( 950) 5033 835.0       0
NP_061727 (OMIM: 606319) protocadherin alpha-13 is ( 950) 5009 831.1       0
NP_114063 (OMIM: 606315) protocadherin alpha-9 iso ( 950) 5006 830.6       0
NP_061725 (OMIM: 606317) protocadherin alpha-11 is ( 949) 5000 829.6       0
NP_061724 (OMIM: 606316) protocadherin alpha-10 is ( 948) 4878 809.6       0
NP_061731 (OMIM: 606311) protocadherin alpha-5 iso ( 936) 4094 681.5 5.5e-195
NP_113684 (OMIM: 606308) protocadherin alpha-2 iso ( 808) 4073 678.0 5.2e-194
NP_113683 (OMIM: 606308) protocadherin alpha-2 iso ( 824) 4073 678.0 5.3e-194
NP_113689 (OMIM: 606311) protocadherin alpha-5 iso ( 816) 4059 675.7 2.6e-193
NP_113685 (OMIM: 606309) protocadherin alpha-3 iso ( 824) 4033 671.5 4.9e-192
NP_114062 (OMIM: 606314) protocadherin alpha-8 iso ( 814) 4028 670.6 8.6e-192
NP_113688 (OMIM: 606310) protocadherin alpha-4 iso ( 798) 3998 665.7 2.5e-190
NP_114036 (OMIM: 606312) protocadherin alpha-6 iso ( 803) 3991 664.6 5.6e-190
NP_061733 (OMIM: 606313) protocadherin alpha-7 iso ( 937) 3991 664.6 6.4e-190
NP_114071 (OMIM: 606319) protocadherin alpha-13 is ( 807) 3972 661.5 4.9e-189
NP_054724 (OMIM: 606315) protocadherin alpha-9 iso ( 842) 3961 659.7 1.8e-188
NP_114067 (OMIM: 606317) protocadherin alpha-11 is ( 810) 3956 658.9  3e-188
NP_114040 (OMIM: 606313) protocadherin alpha-7 iso ( 789) 3952 658.2 4.6e-188
NP_061726 (OMIM: 606318) protocadherin alpha-12 is ( 941) 3867 644.4 8.1e-184
NP_114065 (OMIM: 606316) protocadherin alpha-10 is ( 844) 3839 639.8 1.8e-182
NP_114070 (OMIM: 606318) protocadherin alpha-12 is ( 792) 3836 639.3 2.4e-182
NP_113599 (OMIM: 606307) protocadherin alpha-1 iso ( 686) 3443 575.0 4.6e-163
NP_114037 (OMIM: 606312) protocadherin alpha-6 iso ( 686) 2577 433.4 1.9e-120
NP_114066 (OMIM: 606316) protocadherin alpha-10 is ( 685) 2563 431.1 9.3e-120
NP_002579 (OMIM: 603627) protocadherin gamma-C3 is ( 934) 2023 342.9 4.6e-93
NP_115778 (OMIM: 603627) protocadherin gamma-C3 is ( 863) 1985 336.7 3.2e-91
NP_114089 (OMIM: 606321) protocadherin alpha-C2 is ( 884) 1950 330.9 1.7e-89
NP_115265 (OMIM: 603059) protocadherin gamma-A12 i ( 820) 1925 326.8 2.7e-88
NP_003726 (OMIM: 603059) protocadherin gamma-A12 i ( 932) 1925 326.9   3e-88
NP_061736 (OMIM: 606297) protocadherin gamma-A10 i ( 936) 1918 325.7 6.7e-88
NP_114479 (OMIM: 606297) protocadherin gamma-A10 i ( 850) 1917 325.5 6.9e-88
NP_003727 (OMIM: 603058) protocadherin gamma-B4 is ( 923) 1911 324.6 1.5e-87
NP_061747 (OMIM: 606301) protocadherin gamma-B3 is ( 929) 1908 324.1 2.1e-87
NP_114476 (OMIM: 606294) protocadherin gamma-A7 is ( 817) 1904 323.4 2.9e-87
NP_061743 (OMIM: 606294) protocadherin gamma-A7 is ( 932) 1904 323.4 3.3e-87
NP_061758 (OMIM: 606341) protocadherin beta-15 pre ( 787) 1892 321.4 1.1e-86
NP_114480 (OMIM: 606298) protocadherin gamma-A11 i ( 837) 1891 321.3 1.3e-86
NP_061738 (OMIM: 606289) protocadherin gamma-A2 is ( 932) 1891 321.3 1.4e-86
NP_061737 (OMIM: 606298) protocadherin gamma-A11 i ( 935) 1891 321.3 1.4e-86
NP_114398 (OMIM: 606289) protocadherin gamma-A2 is ( 823) 1884 320.1 2.8e-86
NP_114477 (OMIM: 606295) protocadherin gamma-A8 is ( 932) 1881 319.7 4.4e-86
NP_054723 (OMIM: 606295) protocadherin gamma-A8 is ( 820) 1876 318.8   7e-86
NP_061744 (OMIM: 606296) protocadherin gamma-A9 is ( 932) 1870 317.9 1.5e-85
NP_114478 (OMIM: 606296) protocadherin gamma-A9 is ( 828) 1868 317.5 1.8e-85


>>NP_061723 (OMIM: 606307) protocadherin alpha-1 isoform  (950 aa)
 initn: 6178 init1: 6178 opt: 6178  Z-score: 5462.9  bits: 1022.2 E(85289):    0
Smith-Waterman score: 6178; 100.0% identity (100.0% similar) in 950 aa overlap (1-950:1-950)

               10        20        30        40        50        60
pF1KB3 MVFSRRGGLGARDLLLWLLLLAAWEVGSGQLHYSIPEEAKHGTFVGRVAQDLGLELAELV
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_061 MVFSRRGGLGARDLLLWLLLLAAWEVGSGQLHYSIPEEAKHGTFVGRVAQDLGLELAELV
               10        20        30        40        50        60

               70        80        90       100       110       120
pF1KB3 PRLFRVASKTHRDLLEVNLQNGILFVNSRIDREELCQWSAECSIHLELIADRPLQVFHVE
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_061 PRLFRVASKTHRDLLEVNLQNGILFVNSRIDREELCQWSAECSIHLELIADRPLQVFHVE
               70        80        90       100       110       120

              130       140       150       160       170       180
pF1KB3 VKVKDINDNPPVFRGREQIIFIPESRLLNSRFPIEGAADADIGANALLTYTLSPSDYFSL
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_061 VKVKDINDNPPVFRGREQIIFIPESRLLNSRFPIEGAADADIGANALLTYTLSPSDYFSL
              130       140       150       160       170       180

              190       200       210       220       230       240
pF1KB3 DVEASDELSKSLWLELRKYLDREETPELHLLLTATDGGKPELQGTVELLITVLDVNDNAP
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_061 DVEASDELSKSLWLELRKYLDREETPELHLLLTATDGGKPELQGTVELLITVLDVNDNAP
              190       200       210       220       230       240

              250       260       270       280       290       300
pF1KB3 LFDQAVYRVHLLETTANGTLVTTLNASDADEGVNGEVVFSFDSGISRDIQEKFKVDSSSG
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_061 LFDQAVYRVHLLETTANGTLVTTLNASDADEGVNGEVVFSFDSGISRDIQEKFKVDSSSG
              250       260       270       280       290       300

              310       320       330       340       350       360
pF1KB3 EIRLIDKLDYEETKSYEIQVKAVDKGSPPMSNHCKVLVKVLDVNDNAPELAVTSLYLPIR
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_061 EIRLIDKLDYEETKSYEIQVKAVDKGSPPMSNHCKVLVKVLDVNDNAPELAVTSLYLPIR
              310       320       330       340       350       360

              370       380       390       400       410       420
pF1KB3 EDAPLSTVIALITVSDRDSGANGQVTCSLMPHVPFKLVSTFKNYYSLVLDSALDRESLSV
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_061 EDAPLSTVIALITVSDRDSGANGQVTCSLMPHVPFKLVSTFKNYYSLVLDSALDRESLSV
              370       380       390       400       410       420

              430       440       450       460       470       480
pF1KB3 YELVVTARDGGSPSLWATARVSVEVADVNDNAPAFAQPEYTVFVKENNPPGCHIFTVSAR
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_061 YELVVTARDGGSPSLWATARVSVEVADVNDNAPAFAQPEYTVFVKENNPPGCHIFTVSAR
              430       440       450       460       470       480

              490       500       510       520       530       540
pF1KB3 DADAQENALVSYSLVERRVGERALSNYVSVHAESGKVYALQPLDHEELELLQFQVSARDA
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_061 DADAQENALVSYSLVERRVGERALSNYVSVHAESGKVYALQPLDHEELELLQFQVSARDA
              490       500       510       520       530       540

              550       560       570       580       590       600
pF1KB3 GVPPLGSNVTLQVFVLDENDNAPALLAPRVGGTIGAVSELVPRLVGAGHVVAKVRAVDAD
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_061 GVPPLGSNVTLQVFVLDENDNAPALLAPRVGGTIGAVSELVPRLVGAGHVVAKVRAVDAD
              550       560       570       580       590       600

              610       620       630       640       650       660
pF1KB3 SGYNAWLSYELQPAAGGARIPFRVGLYTGEISTTRVLDEADLSRYRLLVLVKDHGEPALT
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_061 SGYNAWLSYELQPAAGGARIPFRVGLYTGEISTTRVLDEADLSRYRLLVLVKDHGEPALT
              610       620       630       640       650       660

              670       680       690       700       710       720
pF1KB3 ATATVLVSLVESGQAPKASSRASVGVAGPEAALVDVNVYLIIAICAVSSLLVLTLLLYTA
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_061 ATATVLVSLVESGQAPKASSRASVGVAGPEAALVDVNVYLIIAICAVSSLLVLTLLLYTA
              670       680       690       700       710       720

              730       740       750       760       770       780
pF1KB3 LRCSVPPTEGAYVPGKPTLVCSSALGSWSNSQQRRQRVCSSEGPPKTDLMAFSPGLSPSL
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_061 LRCSVPPTEGAYVPGKPTLVCSSALGSWSNSQQRRQRVCSSEGPPKTDLMAFSPGLSPSL
              730       740       750       760       770       780

              790       800       810       820       830       840
pF1KB3 NTSERNEQPEANLDLSGNPRQPNPDWRYSASLRAGMHSSVHLEEAGILRAGPGGPDQQWP
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_061 NTSERNEQPEANLDLSGNPRQPNPDWRYSASLRAGMHSSVHLEEAGILRAGPGGPDQQWP
              790       800       810       820       830       840

              850       860       870       880       890       900
pF1KB3 TVSSATPEPEAGEVSPPVGAGVNSNSWTFKYGPGNPKQSGPGELPDKFIIPGSPAIISIR
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_061 TVSSATPEPEAGEVSPPVGAGVNSNSWTFKYGPGNPKQSGPGELPDKFIIPGSPAIISIR
              850       860       870       880       890       900

              910       920       930       940       950
pF1KB3 QEPTNSQIDKSDFITFGKKEETKKKKKKKKGNKTQEKKEKGNSTTDNSDQ
       ::::::::::::::::::::::::::::::::::::::::::::::::::
NP_061 QEPTNSQIDKSDFITFGKKEETKKKKKKKKGNKTQEKKEKGNSTTDNSDQ
              910       920       930       940       950

>>NP_113598 (OMIM: 606307) protocadherin alpha-1 isoform  (807 aa)
 initn: 5133 init1: 5133 opt: 5133  Z-score: 4540.6  bits: 851.3 E(85289):    0
Smith-Waterman score: 5133; 100.0% identity (100.0% similar) in 798 aa overlap (1-798:1-798)

               10        20        30        40        50        60
pF1KB3 MVFSRRGGLGARDLLLWLLLLAAWEVGSGQLHYSIPEEAKHGTFVGRVAQDLGLELAELV
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_113 MVFSRRGGLGARDLLLWLLLLAAWEVGSGQLHYSIPEEAKHGTFVGRVAQDLGLELAELV
               10        20        30        40        50        60

               70        80        90       100       110       120
pF1KB3 PRLFRVASKTHRDLLEVNLQNGILFVNSRIDREELCQWSAECSIHLELIADRPLQVFHVE
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_113 PRLFRVASKTHRDLLEVNLQNGILFVNSRIDREELCQWSAECSIHLELIADRPLQVFHVE
               70        80        90       100       110       120

              130       140       150       160       170       180
pF1KB3 VKVKDINDNPPVFRGREQIIFIPESRLLNSRFPIEGAADADIGANALLTYTLSPSDYFSL
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_113 VKVKDINDNPPVFRGREQIIFIPESRLLNSRFPIEGAADADIGANALLTYTLSPSDYFSL
              130       140       150       160       170       180

              190       200       210       220       230       240
pF1KB3 DVEASDELSKSLWLELRKYLDREETPELHLLLTATDGGKPELQGTVELLITVLDVNDNAP
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_113 DVEASDELSKSLWLELRKYLDREETPELHLLLTATDGGKPELQGTVELLITVLDVNDNAP
              190       200       210       220       230       240

              250       260       270       280       290       300
pF1KB3 LFDQAVYRVHLLETTANGTLVTTLNASDADEGVNGEVVFSFDSGISRDIQEKFKVDSSSG
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_113 LFDQAVYRVHLLETTANGTLVTTLNASDADEGVNGEVVFSFDSGISRDIQEKFKVDSSSG
              250       260       270       280       290       300

              310       320       330       340       350       360
pF1KB3 EIRLIDKLDYEETKSYEIQVKAVDKGSPPMSNHCKVLVKVLDVNDNAPELAVTSLYLPIR
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_113 EIRLIDKLDYEETKSYEIQVKAVDKGSPPMSNHCKVLVKVLDVNDNAPELAVTSLYLPIR
              310       320       330       340       350       360

              370       380       390       400       410       420
pF1KB3 EDAPLSTVIALITVSDRDSGANGQVTCSLMPHVPFKLVSTFKNYYSLVLDSALDRESLSV
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_113 EDAPLSTVIALITVSDRDSGANGQVTCSLMPHVPFKLVSTFKNYYSLVLDSALDRESLSV
              370       380       390       400       410       420

              430       440       450       460       470       480
pF1KB3 YELVVTARDGGSPSLWATARVSVEVADVNDNAPAFAQPEYTVFVKENNPPGCHIFTVSAR
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_113 YELVVTARDGGSPSLWATARVSVEVADVNDNAPAFAQPEYTVFVKENNPPGCHIFTVSAR
              430       440       450       460       470       480

              490       500       510       520       530       540
pF1KB3 DADAQENALVSYSLVERRVGERALSNYVSVHAESGKVYALQPLDHEELELLQFQVSARDA
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_113 DADAQENALVSYSLVERRVGERALSNYVSVHAESGKVYALQPLDHEELELLQFQVSARDA
              490       500       510       520       530       540

              550       560       570       580       590       600
pF1KB3 GVPPLGSNVTLQVFVLDENDNAPALLAPRVGGTIGAVSELVPRLVGAGHVVAKVRAVDAD
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_113 GVPPLGSNVTLQVFVLDENDNAPALLAPRVGGTIGAVSELVPRLVGAGHVVAKVRAVDAD
              550       560       570       580       590       600

              610       620       630       640       650       660
pF1KB3 SGYNAWLSYELQPAAGGARIPFRVGLYTGEISTTRVLDEADLSRYRLLVLVKDHGEPALT
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_113 SGYNAWLSYELQPAAGGARIPFRVGLYTGEISTTRVLDEADLSRYRLLVLVKDHGEPALT
              610       620       630       640       650       660

              670       680       690       700       710       720
pF1KB3 ATATVLVSLVESGQAPKASSRASVGVAGPEAALVDVNVYLIIAICAVSSLLVLTLLLYTA
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_113 ATATVLVSLVESGQAPKASSRASVGVAGPEAALVDVNVYLIIAICAVSSLLVLTLLLYTA
              670       680       690       700       710       720

              730       740       750       760       770       780
pF1KB3 LRCSVPPTEGAYVPGKPTLVCSSALGSWSNSQQRRQRVCSSEGPPKTDLMAFSPGLSPSL
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_113 LRCSVPPTEGAYVPGKPTLVCSSALGSWSNSQQRRQRVCSSEGPPKTDLMAFSPGLSPSL
              730       740       750       760       770       780

              790       800       810       820       830       840
pF1KB3 NTSERNEQPEANLDLSGNPRQPNPDWRYSASLRAGMHSSVHLEEAGILRAGPGGPDQQWP
       ::::::::::::::::::                                          
NP_113 NTSERNEQPEANLDLSGNVSPTFEFWL                                 
              790       800                                        

>>NP_061728 (OMIM: 606308) protocadherin alpha-2 isoform  (948 aa)
 initn: 5112 init1: 4073 opt: 5111  Z-score: 4520.2  bits: 847.7 E(85289):    0
Smith-Waterman score: 5111; 83.3% identity (92.2% similar) in 950 aa overlap (1-950:1-948)

               10        20        30        40        50        60
pF1KB3 MVFSRRGGLGARDLLLWLLLLAAWEVGSGQLHYSIPEEAKHGTFVGRVAQDLGLELAELV
       :. : : : ::   :: ::::::::::::::.::.::::::::::::.:::::::: :::
NP_061 MASSIRRGRGAWTRLLSLLLLAAWEVGSGQLRYSVPEEAKHGTFVGRIAQDLGLELEELV
               10        20        30        40        50        60

               70        80        90       100       110       120
pF1KB3 PRLFRVASKTHRDLLEVNLQNGILFVNSRIDREELCQWSAECSIHLELIADRPLQVFHVE
       ::::::::: : ::::::::::::::::::::::::  :::::::.:.:.::::::::::
NP_061 PRLFRVASKRHGDLLEVNLQNGILFVNSRIDREELCGRSAECSIHVEVIVDRPLQVFHVE
               70        80        90       100       110       120

              130       140       150       160       170       180
pF1KB3 VKVKDINDNPPVFRGREQIIFIPESRLLNSRFPIEGAADADIGANALLTYTLSPSDYFSL
       :.:::::::::.:    . : .::::::.::::.:::.:::::.::::.: :: :..: :
NP_061 VEVKDINDNPPIFPMTVKTIRFPESRLLDSRFPLEGASDADIGVNALLSYKLSSSEFFFL
              130       140       150       160       170       180

              190       200       210       220       230       240
pF1KB3 DVEASDELSKSLWLELRKYLDREETPELHLLLTATDGGKPELQGTVELLITVLDVNDNAP
       :..:.::::.:: : : : :::::: :..:::.::::::::: :::..:: ::::::: :
NP_061 DIQANDELSESLSLVLGKSLDREETAEVNLLLVATDGGKPELTGTVQILIKVLDVNDNEP
              190       200       210       220       230       240

              250       260       270       280       290       300
pF1KB3 LFDQAVYRVHLLETTANGTLVTTLNASDADEGVNGEVVFSFDSGISRDIQEKFKVDSSSG
        : :.::.:.:::.:::::::. ::::::::: :.:.:.:. : .:  :: :: .:  ::
NP_061 TFAQSVYKVKLLENTANGTLVVKLNASDADEGPNSEIVYSLGSDVSSTIQTKFTIDPISG
              250       260       270       280       290       300

              310       320       330       340       350       360
pF1KB3 EIRLIDKLDYEETKSYEIQVKAVDKGSPPMSNHCKVLVKVLDVNDNAPELAVTSLYLPIR
       :::   ::::::.::::::: :.:::.: ::.:::. .:..:.:::.::...::: ::: 
NP_061 EIRTKGKLDYEEAKSYEIQVTATDKGTPSMSGHCKISLKLVDINDNTPEVSITSLSLPIS
              310       320       330       340       350       360

              370       380       390       400       410       420
pF1KB3 EDAPLSTVIALITVSDRDSGANGQVTCSLMPHVPFKLVSTFKNYYSLVLDSALDRESLSV
       :.: :.::::::::::::::.::.::::: :::::::::::::::::::::::::::.:.
NP_061 ENASLGTVIALITVSDRDSGTNGHVTCSLTPHVPFKLVSTFKNYYSLVLDSALDRESVSA
              370       380       390       400       410       420

              430       440       450       460       470       480
pF1KB3 YELVVTARDGGSPSLWATARVSVEVADVNDNAPAFAQPEYTVFVKENNPPGCHIFTVSAR
       ::::::::::::::::::. ::.:::::::::::::::::::::::::::::::::::: 
NP_061 YELVVTARDGGSPSLWATTSVSIEVADVNDNAPAFAQPEYTVFVKENNPPGCHIFTVSAW
              430       440       450       460       470       480

              490       500       510       520       530       540
pF1KB3 DADAQENALVSYSLVERRVGERALSNYVSVHAESGKVYALQPLDHEELELLQFQVSARDA
       :::::::::::::::::::::::::.:::::::::::::::::::::.::::::::::::
NP_061 DADAQENALVSYSLVERRVGERALSSYVSVHAESGKVYALQPLDHEEVELLQFQVSARDA
              490       500       510       520       530       540

              550       560       570       580       590       600
pF1KB3 GVPPLGSNVTLQVFVLDENDNAPALLAPRVGGTIGAVSELVPRLVGAGHVVAKVRAVDAD
       :::::::::::::::::::::::::::::.: . ::::::::  ::::::::::::::::
NP_061 GVPPLGSNVTLQVFVLDENDNAPALLAPRAGTAAGAVSELVPWSVGAGHVVAKVRAVDAD
              550       560       570       580       590       600

              610       620       630       640       650       660
pF1KB3 SGYNAWLSYELQPAAGGARIPFRVGLYTGEISTTRVLDEADLSRYRLLVLVKDHGEPALT
       :::::::::::: ..:.::::::::::::::::::.:::::  :.:::::::::::::::
NP_061 SGYNAWLSYELQLGTGSARIPFRVGLYTGEISTTRALDEADSPRHRLLVLVKDHGEPALT
              610       620       630       640       650       660

              670       680       690       700       710       720
pF1KB3 ATATVLVSLVESGQAPKASSRASVGVAGPEAALVDVNVYLIIAICAVSSLLVLTLLLYTA
       :::::::::::::::::::::: ::.:: ::.::::::::::::::::::::::.:::::
NP_061 ATATVLVSLVESGQAPKASSRAWVGAAGSEATLVDVNVYLIIAICAVSSLLVLTVLLYTA
              670       680       690       700       710       720

              730       740       750       760       770       780
pF1KB3 LRCSVPPTEGAYVPGKPTLVCSSALGSWSNSQQRRQRVCSSEGPPKTDLMAFSPGLSPSL
       ::::::::::: .:::::::::::.:::: ::::::::::.: :::::::::::.:: . 
NP_061 LRCSVPPTEGARAPGKPTLVCSSAVGSWSYSQQRRQRVCSGEDPPKTDLMAFSPSLSQGP
              730       740       750       760       770       780

              790       800       810       820       830       840
pF1KB3 NTSERNEQPEANLDLSGNPRQPNPDWRYSASLRAGMHSSVHLEEAGILRAGPGGPDQQWP
       ...:...  :.  .  :.::::::::::::::::::::::::::::::::::::::::::
NP_061 DSAEEKQLSES--EYVGKPRQPNPDWRYSASLRAGMHSSVHLEEAGILRAGPGGPDQQWP
              790         800       810       820       830        

              850       860       870       880       890       900
pF1KB3 TVSSATPEPEAGEVSPPVGAGVNSNSWTFKYGPGNPKQSGPGELPDKFIIPGSPAIISIR
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_061 TVSSATPEPEAGEVSPPVGAGVNSNSWTFKYGPGNPKQSGPGELPDKFIIPGSPAIISIR
      840       850       860       870       880       890        

              910       920       930       940       950
pF1KB3 QEPTNSQIDKSDFITFGKKEETKKKKKKKKGNKTQEKKEKGNSTTDNSDQ
       ::::::::::::::::::::::::::::::::::::::::::::::::::
NP_061 QEPTNSQIDKSDFITFGKKEETKKKKKKKKGNKTQEKKEKGNSTTDNSDQ
      900       910       920       930       940        

>>NP_061729 (OMIM: 606309) protocadherin alpha-3 isoform  (950 aa)
 initn: 5078 init1: 5078 opt: 5078  Z-score: 4491.0  bits: 842.3 E(85289):    0
Smith-Waterman score: 5078; 81.8% identity (92.5% similar) in 950 aa overlap (1-950:1-950)

               10        20        30        40        50        60
pF1KB3 MVFSRRGGLGARDLLLWLLLLAAWEVGSGQLHYSIPEEAKHGTFVGRVAQDLGLELAELV
       :.:: :   ::. ::: :::::: ::::::::::. :::::::::::.::::::::::::
NP_061 MLFSWREDPGAQCLLLSLLLLAASEVGSGQLHYSVSEEAKHGTFVGRIAQDLGLELAELV
               10        20        30        40        50        60

               70        80        90       100       110       120
pF1KB3 PRLFRVASKTHRDLLEVNLQNGILFVNSRIDREELCQWSAECSIHLELIADRPLQVFHVE
       ::::::::: : ::::::::::::::::::::::::  :::::::::.:.::::::::::
NP_061 PRLFRVASKRHGDLLEVNLQNGILFVNSRIDREELCGRSAECSIHLEVIVDRPLQVFHVE
               70        80        90       100       110       120

              130       140       150       160       170       180
pF1KB3 VKVKDINDNPPVFRGREQIIFIPESRLLNSRFPIEGAADADIGANALLTYTLSPSDYFSL
       :.::::::: :::    . .:: :::  .::: .:::.:::::.:.::::.:. ..::.:
NP_061 VEVKDINDNAPVFPMAVKNLFISESRQPGSRFSLEGASDADIGTNSLLTYSLDSTEYFTL
              130       140       150       160       170       180

              190       200       210       220       230       240
pF1KB3 DVEASDELSKSLWLELRKYLDREETPELHLLLTATDGGKPELQGTVELLITVLDVNDNAP
       ::. .::  ::: : :.: :.::.::. .::.:: ::::::: ::..: :::::::::::
NP_061 DVKRNDEEIKSLGLVLKKNLNREDTPKHYLLITAIDGGKPELTGTTQLKITVLDVNDNAP
              190       200       210       220       230       240

              250       260       270       280       290       300
pF1KB3 LFDQAVYRVHLLETTANGTLVTTLNASDADEGVNGEVVFSFDSGISRDIQEKFKVDSSSG
        :....:.:.:::.. :::::.:.::.: ::::: ....::.. .: ::  ::..:  .:
NP_061 AFERTIYKVRLLENAPNGTLVVTVNATDLDEGVNKDIAYSFNTDMSADILSKFHLDPVNG
              250       260       270       280       290       300

              310       320       330       340       350       360
pF1KB3 EIRLIDKLDYEETKSYEIQVKAVDKGSPPMSNHCKVLVKVLDVNDNAPELAVTSLYLPIR
       .: .  ..:.::.:::::::.:.:::.::::.:: ::....:.:::.:::.. :: ::. 
NP_061 QISVKGNIDFEESKSYEIQVEATDKGNPPMSDHCTVLLEIVDINDNVPELVIQSLSLPVL
              310       320       330       340       350       360

              370       380       390       400       410       420
pF1KB3 EDAPLSTVIALITVSDRDSGANGQVTCSLMPHVPFKLVSTFKNYYSLVLDSALDRESLSV
       ::.:::::::::.:::::::.:::::::: ::::::::::::::::::::: :::::.:.
NP_061 EDSPLSTVIALISVSDRDSGVNGQVTCSLTPHVPFKLVSTFKNYYSLVLDSPLDRESVSA
              370       380       390       400       410       420

              430       440       450       460       470       480
pF1KB3 YELVVTARDGGSPSLWATARVSVEVADVNDNAPAFAQPEYTVFVKENNPPGCHIFTVSAR
       ::::::::::::::::::: :::::::::::::::.: ::::::::::::::::::::::
NP_061 YELVVTARDGGSPSLWATASVSVEVADVNDNAPAFSQSEYTVFVKENNPPGCHIFTVSAR
              430       440       450       460       470       480

              490       500       510       520       530       540
pF1KB3 DADAQENALVSYSLVERRVGERALSNYVSVHAESGKVYALQPLDHEELELLQFQVSARDA
       :::::::::::::::::::::::::.::::::::::::::::::::::::::::::::::
NP_061 DADAQENALVSYSLVERRVGERALSSYVSVHAESGKVYALQPLDHEELELLQFQVSARDA
              490       500       510       520       530       540

              550       560       570       580       590       600
pF1KB3 GVPPLGSNVTLQVFVLDENDNAPALLAPRVGGTIGAVSELVPRLVGAGHVVAKVRAVDAD
       :::::::::::::::::::::::::: :::::  ::::::::: ::::::::::::::::
NP_061 GVPPLGSNVTLQVFVLDENDNAPALLMPRVGGIGGAVSELVPRSVGAGHVVAKVRAVDAD
              550       560       570       580       590       600

              610       620       630       640       650       660
pF1KB3 SGYNAWLSYELQPAAGGARIPFRVGLYTGEISTTRVLDEADLSRYRLLVLVKDHGEPALT
       :::::::::::::..::::::::::::::::::::.:::.:  :.::::::::::::.::
NP_061 SGYNAWLSYELQPGTGGARIPFRVGLYTGEISTTRALDEVDAPRHRLLVLVKDHGEPSLT
              610       620       630       640       650       660

              670       680       690       700       710       720
pF1KB3 ATATVLVSLVESGQAPKASSRASVGVAGPEAALVDVNVYLIIAICAVSSLLVLTLLLYTA
       ::::::::::::::::::::.::.:..::::::::::::::.::::::::::::::::::
NP_061 ATATVLVSLVESGQAPKASSQASAGATGPEAALVDVNVYLIVAICAVSSLLVLTLLLYTA
              670       680       690       700       710       720

              730       740       750       760       770       780
pF1KB3 LRCSVPPTEGAYVPGKPTLVCSSALGSWSNSQQRRQRVCSSEGPPKTDLMAFSPGLSPSL
       ::::.:::::   :::::::::::.:::: ::::.:::::.:: ::::::::::.: :  
NP_061 LRCSAPPTEGDCGPGKPTLVCSSAVGSWSYSQQRQQRVCSGEGLPKTDLMAFSPSLPPCP
              730       740       750       760       770       780

              790       800       810       820       830       840
pF1KB3 NTSERNEQPEANLDLSGNPRQPNPDWRYSASLRAGMHSSVHLEEAGILRAGPGGPDQQWP
        . .:.:. ....:::..::::::::::::::::::::::::::::::::::::::::::
NP_061 ISRDREEKQDVDVDLSAKPRQPNPDWRYSASLRAGMHSSVHLEEAGILRAGPGGPDQQWP
              790       800       810       820       830       840

              850       860       870       880       890       900
pF1KB3 TVSSATPEPEAGEVSPPVGAGVNSNSWTFKYGPGNPKQSGPGELPDKFIIPGSPAIISIR
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_061 TVSSATPEPEAGEVSPPVGAGVNSNSWTFKYGPGNPKQSGPGELPDKFIIPGSPAIISIR
              850       860       870       880       890       900

              910       920       930       940       950
pF1KB3 QEPTNSQIDKSDFITFGKKEETKKKKKKKKGNKTQEKKEKGNSTTDNSDQ
       ::::::::::::::::::::::::::::::::::::::::::::::::::
NP_061 QEPTNSQIDKSDFITFGKKEETKKKKKKKKGNKTQEKKEKGNSTTDNSDQ
              910       920       930       940       950

>>NP_061734 (OMIM: 606314) protocadherin alpha-8 isoform  (950 aa)
 initn: 5066 init1: 5066 opt: 5066  Z-score: 4480.4  bits: 840.4 E(85289):    0
Smith-Waterman score: 5066; 81.1% identity (91.8% similar) in 950 aa overlap (1-950:1-950)

               10        20        30        40        50        60
pF1KB3 MVFSRRGGLGARDLLLWLLLLAAWEVGSGQLHYSIPEEAKHGTFVGRVAQDLGLELAELV
       : .  :: ::.  ::: :::::::.:::::::::.::::::::::::.::::::::::::
NP_061 MDYHWRGELGSWRLLLLLLLLAAWKVGSGQLHYSVPEEAKHGTFVGRIAQDLGLELAELV
               10        20        30        40        50        60

               70        80        90       100       110       120
pF1KB3 PRLFRVASKTHRDLLEVNLQNGILFVNSRIDREELCQWSAECSIHLELIADRPLQVFHVE
       ::::::::: :::::::.::::::::::::::::::  :::::::::.:.:::::::::.
NP_061 PRLFRVASKRHRDLLEVSLQNGILFVNSRIDREELCGRSAECSIHLEVIVDRPLQVFHVD
               70        80        90       100       110       120

              130       140       150       160       170       180
pF1KB3 VKVKDINDNPPVFRGREQIIFIPESRLLNSRFPIEGAADADIGANALLTYTLSPSDYFSL
       :.:::.:::::::: ..: .:. :::. .::::.:::.:::.:::..::: ::  ::: :
NP_061 VEVKDVNDNPPVFRVKDQKLFVSESRMPDSRFPLEGASDADVGANSVLTYRLSSHDYFML
              130       140       150       160       170       180

              190       200       210       220       230       240
pF1KB3 DVEASDELSKSLWLELRKYLDREETPELHLLLTATDGGKPELQGTVELLITVLDVNDNAP
       ::..... .: . : ::: ::::..:  ::.::::::::::: :::.::.::::::::::
NP_061 DVNSKNDENKLVELVLRKSLDREDAPAHHLFLTATDGGKPELTGTVQLLVTVLDVNDNAP
              190       200       210       220       230       240

              250       260       270       280       290       300
pF1KB3 LFDQAVYRVHLLETTANGTLVTTLNASDADEGVNGEVVFSFDSGISRDIQEKFKVDSSSG
        :.:. :.:...:.. ::: :  ::::: :::.:: . .::.: .   . ..:..: ..:
NP_061 TFEQSEYEVRIFENADNGTTVIKLNASDPDEGANGAISYSFNSLVETMVIDHFSIDRNTG
              250       260       270       280       290       300

              310       320       330       340       350       360
pF1KB3 EIRLIDKLDYEETKSYEIQVKAVDKGSPPMSNHCKVLVKVLDVNDNAPELAVTSLYLPIR
       :: .  .::.:. . :.: . :.::: :::..:: :::..:: :::.::.:.::: ::.:
NP_061 EIVIRGNLDFEQENLYKILIDATDKGHPPMAGHCTVLVRILDKNDNVPEIALTSLSLPVR
              310       320       330       340       350       360

              370       380       390       400       410       420
pF1KB3 EDAPLSTVIALITVSDRDSGANGQVTCSLMPHVPFKLVSTFKNYYSLVLDSALDRESLSV
       ::: ..::::::.:.: ::::::::::::::::::::::::::::::::::::::: .:.
NP_061 EDAQFGTVIALISVNDLDSGANGQVTCSLMPHVPFKLVSTFKNYYSLVLDSALDRERVSA
              370       380       390       400       410       420

              430       440       450       460       470       480
pF1KB3 YELVVTARDGGSPSLWATARVSVEVADVNDNAPAFAQPEYTVFVKENNPPGCHIFTVSAR
       ::::::::::::::::::: .:::::::::::::::::::::::::::::::::::::::
NP_061 YELVVTARDGGSPSLWATASLSVEVADVNDNAPAFAQPEYTVFVKENNPPGCHIFTVSAR
              430       440       450       460       470       480

              490       500       510       520       530       540
pF1KB3 DADAQENALVSYSLVERRVGERALSNYVSVHAESGKVYALQPLDHEELELLQFQVSARDA
       ::::::::::::::::::::::.::.:.:::.::::::::::::::::::::::::::::
NP_061 DADAQENALVSYSLVERRVGERSLSSYISVHTESGKVYALQPLDHEELELLQFQVSARDA
              490       500       510       520       530       540

              550       560       570       580       590       600
pF1KB3 GVPPLGSNVTLQVFVLDENDNAPALLAPRVGGTIGAVSELVPRLVGAGHVVAKVRAVDAD
       :::::::::::::::::::::::::: :::::: ::.:.:::: ::::::::::::::::
NP_061 GVPPLGSNVTLQVFVLDENDNAPALLEPRVGGTGGAASKLVPRSVGAGHVVAKVRAVDAD
              550       560       570       580       590       600

              610       620       630       640       650       660
pF1KB3 SGYNAWLSYELQPAAGGARIPFRVGLYTGEISTTRVLDEADLSRYRLLVLVKDHGEPALT
       :::::::::::::::.. :::::::::::::::::::::::  :.:::::::::::::::
NP_061 SGYNAWLSYELQPAASSPRIPFRVGLYTGEISTTRVLDEADSPRHRLLVLVKDHGEPALT
              610       620       630       640       650       660

              670       680       690       700       710       720
pF1KB3 ATATVLVSLVESGQAPKASSRASVGVAGPEAALVDVNVYLIIAICAVSSLLVLTLLLYTA
       ::::::::::::::::::::: :.:: :::::::::::::::::::::::::::::::::
NP_061 ATATVLVSLVESGQAPKASSRQSAGVLGPEAALVDVNVYLIIAICAVSSLLVLTLLLYTA
              670       680       690       700       710       720

              730       740       750       760       770       780
pF1KB3 LRCSVPPTEGAYVPGKPTLVCSSALGSWSNSQQRRQRVCSSEGPPKTDLMAFSPGLSPSL
       ::::. ::::.   ::::::::::.:::: :::. :::::.::::::::::::: : :.:
NP_061 LRCSALPTEGGCRAGKPTLVCSSAVGSWSYSQQQPQRVCSGEGPPKTDLMAFSPCLPPDL
              730       740       750       760       770       780

              790       800       810       820       830       840
pF1KB3 NTSERNEQPEANLDLSGNPRQPNPDWRYSASLRAGMHSSVHLEEAGILRAGPGGPDQQWP
       .. . .:. . :.: . .::::::::::::::::::::::::::::::::::::::::::
NP_061 GSVDVGEEQDLNVDHGLKPRQPNPDWRYSASLRAGMHSSVHLEEAGILRAGPGGPDQQWP
              790       800       810       820       830       840

              850       860       870       880       890       900
pF1KB3 TVSSATPEPEAGEVSPPVGAGVNSNSWTFKYGPGNPKQSGPGELPDKFIIPGSPAIISIR
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_061 TVSSATPEPEAGEVSPPVGAGVNSNSWTFKYGPGNPKQSGPGELPDKFIIPGSPAIISIR
              850       860       870       880       890       900

              910       920       930       940       950
pF1KB3 QEPTNSQIDKSDFITFGKKEETKKKKKKKKGNKTQEKKEKGNSTTDNSDQ
       ::::::::::::::::::::::::::::::::::::::::::::::::::
NP_061 QEPTNSQIDKSDFITFGKKEETKKKKKKKKGNKTQEKKEKGNSTTDNSDQ
              910       920       930       940       950

>>NP_061730 (OMIM: 606310) protocadherin alpha-4 isoform  (947 aa)
 initn: 3999 init1: 3999 opt: 5033  Z-score: 4451.2  bits: 835.0 E(85289):    0
Smith-Waterman score: 5033; 81.7% identity (92.1% similar) in 950 aa overlap (1-950:1-947)

               10        20        30        40        50        60
pF1KB3 MVFSRRGGLGARDLLLWLLLLAAWEVGSGQLHYSIPEEAKHGTFVGRVAQDLGLELAELV
       : ::  .:  .: ::: ::::::::.:.::::::. :::::::::::.::::::::::::
NP_061 MEFSWGSGQESRRLLLLLLLLAAWEAGNGQLHYSVSEEAKHGTFVGRIAQDLGLELAELV
               10        20        30        40        50        60

               70        80        90       100       110       120
pF1KB3 PRLFRVASKTHRDLLEVNLQNGILFVNSRIDREELCQWSAECSIHLELIADRPLQVFHVE
       ::::::::: .  :::::::::::::::::::::::. :::::::::.:.:::::::::.
NP_061 PRLFRVASKGRGGLLEVNLQNGILFVNSRIDREELCRRSAECSIHLEVIVDRPLQVFHVD
               70        80        90       100       110       120

              130       140       150       160       170       180
pF1KB3 VKVKDINDNPPVFRGREQIIFIPESRLLNSRFPIEGAADADIGANALLTYTLSPSDYFSL
       :.:.::::::::: . .. . : ::: :.::::.:::.::::: :::::: :::..::::
NP_061 VEVRDINDNPPVFPATQKNLSIAESRPLDSRFPLEGASDADIGENALLTYRLSPNEYFSL
              130       140       150       160       170       180

              190       200       210       220       230       240
pF1KB3 DVEASDELSKSLWLELRKYLDREETPELHLLLTATDGGKPELQGTVELLITVLDVNDNAP
       .   .::: :.: : ::: :::::.::. :.::::::::::: :::.:::::::.:::::
NP_061 EKPPDDELVKGLGLILRKSLDREEAPEIFLVLTATDGGKPELTGTVQLLITVLDANDNAP
              190       200       210       220       230       240

              250       260       270       280       290       300
pF1KB3 LFDQAVYRVHLLETTANGTLVTTLNASDADEGVNGEVVFSFDSGISRDIQEKFKVDSSSG
        ::...:.:.:::.. :::::  ::::: :::.::..:.::.. :: ... ::..:  .:
NP_061 AFDRTIYKVRLLENVPNGTLVIKLNASDLDEGLNGDIVYSFSNDISPNVKSKFHIDPITG
              250       260       270       280       290       300

              310       320       330       340       350       360
pF1KB3 EIRLIDKLDYEETKSYEIQVKAVDKGSPPMSNHCKVLVKVLDVNDNAPELAVTSLYLPIR
       .: .   .:.::.::::: :...:::. :.:.::.:.:.: : :::.:.:   :: ::::
NP_061 QIIVKGYIDFEESKSYEIIVEGIDKGQLPLSGHCRVIVEVEDNNDNVPDLEFKSLSLPIR
              310       320       330       340       350       360

              370       380       390       400       410       420
pF1KB3 EDAPLSTVIALITVSDRDSGANGQVTCSLMPHVPFKLVSTFKNYYSLVLDSALDRESLSV
       :::::.::::::.:::.: :.:: :::::  ::::::::::::::::::::::::::.:.
NP_061 EDAPLGTVIALISVSDKDMGVNGLVTCSLTSHVPFKLVSTFKNYYSLVLDSALDRESVSA
              370       380       390       400       410       420

              430       440       450       460       470       480
pF1KB3 YELVVTARDGGSPSLWATARVSVEVADVNDNAPAFAQPEYTVFVKENNPPGCHIFTVSAR
       ::::::::::::::::::: ::::::::::::::::::::::::::::::::::::::: 
NP_061 YELVVTARDGGSPSLWATASVSVEVADVNDNAPAFAQPEYTVFVKENNPPGCHIFTVSAW
              430       440       450       460       470       480

              490       500       510       520       530       540
pF1KB3 DADAQENALVSYSLVERRVGERALSNYVSVHAESGKVYALQPLDHEELELLQFQVSARDA
       :::::::::::::::::::::::::.:::::::::::::::::::::::::::::.::::
NP_061 DADAQENALVSYSLVERRVGERALSSYVSVHAESGKVYALQPLDHEELELLQFQVTARDA
              490       500       510       520       530       540

              550       560       570       580       590       600
pF1KB3 GVPPLGSNVTLQVFVLDENDNAPALLAPRVGGTIGAVSELVPRLVGAGHVVAKVRAVDAD
       :::::::::::::::::::::::::::::.::: ::::::::  ::.:::::::::::::
NP_061 GVPPLGSNVTLQVFVLDENDNAPALLAPRAGGTGGAVSELVPWSVGVGHVVAKVRAVDAD
              550       560       570       580       590       600

              610       620       630       640       650       660
pF1KB3 SGYNAWLSYELQPAAGGARIPFRVGLYTGEISTTRVLDEADLSRYRLLVLVKDHGEPALT
       :::::::::::::..::::::::::::::::::::.:::.:  :.:::::::::::::::
NP_061 SGYNAWLSYELQPGTGGARIPFRVGLYTGEISTTRALDETDAPRHRLLVLVKDHGEPALT
              610       620       630       640       650       660

              670       680       690       700       710       720
pF1KB3 ATATVLVSLVESGQAPKASSRASVGVAGPEAALVDVNVYLIIAICAVSSLLVLTLLLYTA
       :::::::::::::::::::::: ::..::.::::::::::::::::::::::::::::::
NP_061 ATATVLVSLVESGQAPKASSRALVGAVGPDAALVDVNVYLIIAICAVSSLLVLTLLLYTA
              670       680       690       700       710       720

              730       740       750       760       770       780
pF1KB3 LRCSVPPTEGAYVPGKPTLVCSSALGSWSNSQQRRQRVCSSEGPPKTDLMAFSPGLSPSL
       ::::. ::::: .:::::::::::.:::: ::::: ::::.:::::::::::::.: :  
NP_061 LRCSALPTEGACAPGKPTLVCSSAVGSWSYSQQRRPRVCSGEGPPKTDLMAFSPSL-P--
              730       740       750       760       770          

              790       800       810       820       830       840
pF1KB3 NTSERNEQPEANLDLSGNPRQPNPDWRYSASLRAGMHSSVHLEEAGILRAGPGGPDQQWP
       .. .:..: ... .  ..::::::::::::::::::::::::::::::::::::::::::
NP_061 DSRDREDQLQTTEESFAKPRQPNPDWRYSASLRAGMHSSVHLEEAGILRAGPGGPDQQWP
       780       790       800       810       820       830       

              850       860       870       880       890       900
pF1KB3 TVSSATPEPEAGEVSPPVGAGVNSNSWTFKYGPGNPKQSGPGELPDKFIIPGSPAIISIR
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_061 TVSSATPEPEAGEVSPPVGAGVNSNSWTFKYGPGNPKQSGPGELPDKFIIPGSPAIISIR
       840       850       860       870       880       890       

              910       920       930       940       950
pF1KB3 QEPTNSQIDKSDFITFGKKEETKKKKKKKKGNKTQEKKEKGNSTTDNSDQ
       ::::::::::::::::::::::::::::::::::::::::::::::::::
NP_061 QEPTNSQIDKSDFITFGKKEETKKKKKKKKGNKTQEKKEKGNSTTDNSDQ
       900       910       920       930       940       

>>NP_061732 (OMIM: 606312) protocadherin alpha-6 isoform  (950 aa)
 initn: 5033 init1: 5033 opt: 5033  Z-score: 4451.2  bits: 835.0 E(85289):    0
Smith-Waterman score: 5033; 80.9% identity (92.1% similar) in 950 aa overlap (1-950:1-950)

               10        20        30        40        50        60
pF1KB3 MVFSRRGGLGARDLLLWLLLLAAWEVGSGQLHYSIPEEAKHGTFVGRVAQDLGLELAELV
       :::. .  :: . ::: :::::::.:::::::::.::::::::::::.::::::::::::
NP_061 MVFTPEDRLGKQCLLLPLLLLAAWKVGSGQLHYSVPEEAKHGTFVGRIAQDLGLELAELV
               10        20        30        40        50        60

               70        80        90       100       110       120
pF1KB3 PRLFRVASKTHRDLLEVNLQNGILFVNSRIDREELCQWSAECSIHLELIADRPLQVFHVE
       :::::.::: ..::::::::::::::::::::::::  :::::::::.:.:::::::::.
NP_061 PRLFRMASKDREDLLEVNLQNGILFVNSRIDREELCGRSAECSIHLEVIVDRPLQVFHVD
               70        80        90       100       110       120

              130       140       150       160       170       180
pF1KB3 VKVKDINDNPPVFRGREQIIFIPESRLLNSRFPIEGAADADIGANALLTYTLSPSDYFSL
       :.:.:::::::.:  .:: ..: :::: .: ::.:::.:::.:.:..::: :: :.::.:
NP_061 VEVRDINDNPPLFPVEEQRVLIYESRLPDSVFPLEGASDADVGSNSILTYKLSSSEYFGL
              130       140       150       160       170       180

              190       200       210       220       230       240
pF1KB3 DVEASDELSKSLWLELRKYLDREETPELHLLLTATDGGKPELQGTVELLITVLDVNDNAP
       ::. ... .:.. : :.: :::::.:  .:.::::::::::: :::.::.::::::::::
NP_061 DVKINSDDNKQIGLLLKKSLDREEAPAHNLFLTATDGGKPELTGTVQLLVTVLDVNDNAP
              190       200       210       220       230       240

              250       260       270       280       290       300
pF1KB3 LFDQAVYRVHLLETTANGTLVTTLNASDADEGVNGEVVFSFDSGISRDIQEKFKVDSSSG
        :.:. :.:...:.. ::: :  ::::: :::.:: . .::.: ..  . ..:..: ..:
NP_061 TFEQSEYEVRIFENADNGTTVIRLNASDRDEGANGAISYSFNSLVAAMVIDHFSIDRNTG
              250       260       270       280       290       300

              310       320       330       340       350       360
pF1KB3 EIRLIDKLDYEETKSYEIQVKAVDKGSPPMSNHCKVLVKVLDVNDNAPELAVTSLYLPIR
       :: .  .::.:. . :.: . :.::: :::..:: :::..:: :::.::.:.::: ::.:
NP_061 EIVIRGNLDFEQENLYKILIDATDKGHPPMAGHCTVLVRILDKNDNVPEIALTSLSLPVR
              310       320       330       340       350       360

              370       380       390       400       410       420
pF1KB3 EDAPLSTVIALITVSDRDSGANGQVTCSLMPHVPFKLVSTFKNYYSLVLDSALDRESLSV
       ::: ..::::::.:.: ::::::::.::: :::::::::::::::::::::::::::.:.
NP_061 EDAQFGTVIALISVNDLDSGANGQVNCSLTPHVPFKLVSTFKNYYSLVLDSALDRESVSA
              370       380       390       400       410       420

              430       440       450       460       470       480
pF1KB3 YELVVTARDGGSPSLWATARVSVEVADVNDNAPAFAQPEYTVFVKENNPPGCHIFTVSAR
       ::::::::::::::::::: .::::::.::::::::::::::::::::::::::::::::
NP_061 YELVVTARDGGSPSLWATASLSVEVADMNDNAPAFAQPEYTVFVKENNPPGCHIFTVSAR
              430       440       450       460       470       480

              490       500       510       520       530       540
pF1KB3 DADAQENALVSYSLVERRVGERALSNYVSVHAESGKVYALQPLDHEELELLQFQVSARDA
       :::::::::::::::::::::::::.:.::::::::::::::::::::::::::::::::
NP_061 DADAQENALVSYSLVERRVGERALSSYISVHAESGKVYALQPLDHEELELLQFQVSARDA
              490       500       510       520       530       540

              550       560       570       580       590       600
pF1KB3 GVPPLGSNVTLQVFVLDENDNAPALLAPRVGGTIGAVSELVPRLVGAGHVVAKVRAVDAD
       ::::::::::::::::::::::::::::::::: ::::::::: .:::.:::::::::::
NP_061 GVPPLGSNVTLQVFVLDENDNAPALLAPRVGGTGGAVSELVPRSLGAGQVVAKVRAVDAD
              550       560       570       580       590       600

              610       620       630       640       650       660
pF1KB3 SGYNAWLSYELQPAAGGARIPFRVGLYTGEISTTRVLDEADLSRYRLLVLVKDHGEPALT
       ::::::::::::: :..::.:::::::::::::::::::::  :.:::::::::::::::
NP_061 SGYNAWLSYELQPPASSARFPFRVGLYTGEISTTRVLDEADSPRHRLLVLVKDHGEPALT
              610       620       630       640       650       660

              670       680       690       700       710       720
pF1KB3 ATATVLVSLVESGQAPKASSRASVGVAGPEAALVDVNVYLIIAICAVSSLLVLTLLLYTA
       :::::::::::::::::::::::::.::::::::::::::::::::::::::::::::::
NP_061 ATATVLVSLVESGQAPKASSRASVGAAGPEAALVDVNVYLIIAICAVSSLLVLTLLLYTA
              670       680       690       700       710       720

              730       740       750       760       770       780
pF1KB3 LRCSVPPTEGAYVPGKPTLVCSSALGSWSNSQQRRQRVCSSEGPPKTDLMAFSPGLSPSL
       ::::.:::::: .  :::::::::.:::: ::::::::::.::::: :::::::.:::  
NP_061 LRCSAPPTEGACTADKPTLVCSSAVGSWSYSQQRRQRVCSGEGPPKMDLMAFSPSLSPCP
              730       740       750       760       770       780

              790       800       810       820       830       840
pF1KB3 NTSERNEQPEANLDLSGNPRQPNPDWRYSASLRAGMHSSVHLEEAGILRAGPGGPDQQWP
           . :. . : : ...::::::::::::::::::::::::::::::::::::::::::
NP_061 IMMGKAENQDLNEDHDAKPRQPNPDWRYSASLRAGMHSSVHLEEAGILRAGPGGPDQQWP
              790       800       810       820       830       840

              850       860       870       880       890       900
pF1KB3 TVSSATPEPEAGEVSPPVGAGVNSNSWTFKYGPGNPKQSGPGELPDKFIIPGSPAIISIR
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_061 TVSSATPEPEAGEVSPPVGAGVNSNSWTFKYGPGNPKQSGPGELPDKFIIPGSPAIISIR
              850       860       870       880       890       900

              910       920       930       940       950
pF1KB3 QEPTNSQIDKSDFITFGKKEETKKKKKKKKGNKTQEKKEKGNSTTDNSDQ
       ::::::::::::::::::::::::::::::::::::::::::::::::::
NP_061 QEPTNSQIDKSDFITFGKKEETKKKKKKKKGNKTQEKKEKGNSTTDNSDQ
              910       920       930       940       950

>>NP_061727 (OMIM: 606319) protocadherin alpha-13 isofor  (950 aa)
 initn: 5009 init1: 5009 opt: 5009  Z-score: 4430.0  bits: 831.1 E(85289):    0
Smith-Waterman score: 5009; 81.2% identity (91.2% similar) in 950 aa overlap (1-950:1-950)

               10        20        30        40        50        60
pF1KB3 MVFSRRGGLGARDLLLWLLLLAAWEVGSGQLHYSIPEEAKHGTFVGRVAQDLGLELAELV
       :. : .::   :.::::::.:::::.::::::::.::::::::::::.::::::::::::
NP_061 MLSSWQGGPRPRQLLLWLLILAAWETGSGQLHYSVPEEAKHGTFVGRIAQDLGLELAELV
               10        20        30        40        50        60

               70        80        90       100       110       120
pF1KB3 PRLFRVASKTHRDLLEVNLQNGILFVNSRIDREELCQWSAECSIHLELIADRPLQVFHVE
       ::::::::: : ::::::::::::::::::::::::  :::::::::.:.::::::::::
NP_061 PRLFRVASKRHGDLLEVNLQNGILFVNSRIDREELCGRSAECSIHLEVIVDRPLQVFHVE
               70        80        90       100       110       120

              130       140       150       160       170       180
pF1KB3 VKVKDINDNPPVFRGREQIIFIPESRLLNSRFPIEGAADADIGANALLTYTLSPSDYFSL
       :::.:::::::.:   .. :.: :::  ..:::..::.:::::.:. ::: :.:.:::.:
NP_061 VKVRDINDNPPIFPESKKRIIIAESRPPETRFPLDGASDADIGVNSALTYRLDPNDYFTL
              130       140       150       160       170       180

              190       200       210       220       230       240
pF1KB3 DVEASDELSKSLWLELRKYLDREETPELHLLLTATDGGKPELQGTVELLITVLDVNDNAP
       :.. : :  .:: : ::: :::::  :  :::::.::::::: :::.::::.::::::::
NP_061 DAQNSLEQMSSLSLVLRKTLDREEIQEHSLLLTASDGGKPELTGTVQLLITILDVNDNAP
              190       200       210       220       230       240

              250       260       270       280       290       300
pF1KB3 LFDQAVYRVHLLETTANGTLVTTLNASDADEGVNGEVVFSFDSGISRDIQEKFKVDSSSG
        : :.::.: .::.. :::::  :::.: :.:.::..:.::   .   .   : .. ..:
NP_061 EFYQSVYKVTVLENAFNGTLVIKLNATDPDDGTNGDIVYSFRRPVWPAVVYAFTINPNNG
              250       260       270       280       290       300

              310       320       330       340       350       360
pF1KB3 EIRLIDKLDYEETKSYEIQVKAVDKGSPPMSNHCKVLVKVLDVNDNAPELAVTSLYLPIR
       :::   :::.:: : :::.:.:::::. ::..:: .::.::::::::::...::: ::::
NP_061 EIRTKGKLDFEEKKLYEISVEAVDKGNIPMAGHCTLLVEVLDVNDNAPEVTITSLSLPIR
              310       320       330       340       350       360

              370       380       390       400       410       420
pF1KB3 EDAPLSTVIALITVSDRDSGANGQVTCSLMPHVPFKLVSTFKNYYSLVLDSALDRESLSV
       ::.  :..::::.:::::::.::::::.: ::::::::::.::::::::::::::::.:.
NP_061 EDTQPSAIIALISVSDRDSGSNGQVTCTLTPHVPFKLVSTYKNYYSLVLDSALDRESVSA
              370       380       390       400       410       420

              430       440       450       460       470       480
pF1KB3 YELVVTARDGGSPSLWATARVSVEVADVNDNAPAFAQPEYTVFVKENNPPGCHIFTVSAR
       ::::::::::::::::::: ::: :::::::::::::::::::::::::::::::::::.
NP_061 YELVVTARDGGSPSLWATASVSVGVADVNDNAPAFAQPEYTVFVKENNPPGCHIFTVSAQ
              430       440       450       460       470       480

              490       500       510       520       530       540
pF1KB3 DADAQENALVSYSLVERRVGERALSNYVSVHAESGKVYALQPLDHEELELLQFQVSARDA
       :::::::::::::::::::::::::.:::::::::::::::::::::::::::::::::.
NP_061 DADAQENALVSYSLVERRVGERALSSYVSVHAESGKVYALQPLDHEELELLQFQVSARDS
              490       500       510       520       530       540

              550       560       570       580       590       600
pF1KB3 GVPPLGSNVTLQVFVLDENDNAPALLAPRVGGTIGAVSELVPRLVGAGHVVAKVRAVDAD
       ::::::::::::::::::::::::::.: .:.. :.::::.:: ::::::::::::::::
NP_061 GVPPLGSNVTLQVFVLDENDNAPALLTPGAGSAGGTVSELMPRSVGAGHVVAKVRAVDAD
              550       560       570       580       590       600

              610       620       630       640       650       660
pF1KB3 SGYNAWLSYELQPAAGGARIPFRVGLYTGEISTTRVLDEADLSRYRLLVLVKDHGEPALT
       :::::::::::: :: ::::::::::::::::::: :::.:  ..:::::::::::::::
NP_061 SGYNAWLSYELQLAAVGARIPFRVGLYTGEISTTRPLDEVDAPHHRLLVLVKDHGEPALT
              610       620       630       640       650       660

              670       680       690       700       710       720
pF1KB3 ATATVLVSLVESGQAPKASSRASVGVAGPEAALVDVNVYLIIAICAVSSLLVLTLLLYTA
       ::::::.:::::::::.::::::.:..:::::::::::::::::::::::::::::::::
NP_061 ATATVLLSLVESGQAPQASSRASAGAVGPEAALVDVNVYLIIAICAVSSLLVLTLLLYTA
              670       680       690       700       710       720

              730       740       750       760       770       780
pF1KB3 LRCSVPPTEGAYVPGKPTLVCSSALGSWSNSQQRRQRVCSSEGPPKTDLMAFSPGLSPSL
       ::::.:::::: .::::::::::: :::: ::::: ::::.::: :::::::::.: : :
NP_061 LRCSAPPTEGACAPGKPTLVCSSAAGSWSYSQQRRPRVCSGEGPHKTDLMAFSPSLPPCL
              730       740       750       760       770       780

              790       800       810       820       830       840
pF1KB3 NTSERNEQPEANLDLSGNPRQPNPDWRYSASLRAGMHSSVHLEEAGILRAGPGGPDQQWP
       ...: . : : . .   .::::::::::::::::::::::::::::::::::::::::::
NP_061 GSAEGTGQREEDSECLKEPRQPNPDWRYSASLRAGMHSSVHLEEAGILRAGPGGPDQQWP
              790       800       810       820       830       840

              850       860       870       880       890       900
pF1KB3 TVSSATPEPEAGEVSPPVGAGVNSNSWTFKYGPGNPKQSGPGELPDKFIIPGSPAIISIR
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_061 TVSSATPEPEAGEVSPPVGAGVNSNSWTFKYGPGNPKQSGPGELPDKFIIPGSPAIISIR
              850       860       870       880       890       900

              910       920       930       940       950
pF1KB3 QEPTNSQIDKSDFITFGKKEETKKKKKKKKGNKTQEKKEKGNSTTDNSDQ
       ::::::::::::::::::::::::::::::::::::::::::::::::::
NP_061 QEPTNSQIDKSDFITFGKKEETKKKKKKKKGNKTQEKKEKGNSTTDNSDQ
              910       920       930       940       950

>>NP_114063 (OMIM: 606315) protocadherin alpha-9 isoform  (950 aa)
 initn: 5006 init1: 5006 opt: 5006  Z-score: 4427.4  bits: 830.6 E(85289):    0
Smith-Waterman score: 5006; 80.6% identity (91.7% similar) in 950 aa overlap (1-950:1-950)

               10        20        30        40        50        60
pF1KB3 MVFSRRGGLGARDLLLWLLLLAAWEVGSGQLHYSIPEEAKHGTFVGRVAQDLGLELAELV
       :..: ::   .. ::: ::.:: : :::::::::.::::.:::::::.::::::::::::
NP_114 MLYSSRGDPEGQPLLLSLLILAMWVVGSGQLHYSVPEEAEHGTFVGRIAQDLGLELAELV
               10        20        30        40        50        60

               70        80        90       100       110       120
pF1KB3 PRLFRVASKTHRDLLEVNLQNGILFVNSRIDREELCQWSAECSIHLELIADRPLQVFHVE
       ::::.. :: . ::::::::::::::::::::::::  :::::::::.:.:::::::::.
NP_114 PRLFQLDSKGRGDLLEVNLQNGILFVNSRIDREELCGRSAECSIHLEVIVDRPLQVFHVD
               70        80        90       100       110       120

              130       140       150       160       170       180
pF1KB3 VKVKDINDNPPVFRGREQIIFIPESRLLNSRFPIEGAADADIGANALLTYTLSPSDYFSL
       :.::::::::::: . .. .:: ::: :.::::.:::.::::: :::::: :::..:: :
NP_114 VEVKDINDNPPVFPATQKNLFIAESRPLDSRFPLEGASDADIGENALLTYRLSPNEYFFL
              130       140       150       160       170       180

              190       200       210       220       230       240
pF1KB3 DVEASDELSKSLWLELRKYLDREETPELHLLLTATDGGKPELQGTVELLITVLDVNDNAP
       :: .:..  : : : ::: ::::::::::::::::::::::: :::.::::::: :::::
NP_114 DVPTSNQQVKPLGLVLRKLLDREETPELHLLLTATDGGKPELTGTVQLLITVLDNNDNAP
              190       200       210       220       230       240

              250       260       270       280       290       300
pF1KB3 LFDQAVYRVHLLETTANGTLVTTLNASDADEGVNGEVVFSFDSGISRDIQEKFKVDSSSG
       .::...: :.: :... ::::   :::: :::.::....::.: .: ::. ::..:  ::
NP_114 VFDRTLYTVKLPENVSIGTLVIHPNASDLDEGLNGDIIYSFSSDVSPDIKSKFHMDPLSG
              250       260       270       280       290       300

              310       320       330       340       350       360
pF1KB3 EIRLIDKLDYEETKSYEIQVKAVDKGSPPMSNHCKVLVKVLDVNDNAPELAVTSLYLPIR
        : .: ..:.::.....: :.::::: ::...:: .::.:.:::::::.:.. .: .:..
NP_114 AITVIGHMDFEESRAHKIPVEAVDKGFPPLAGHCTLLVEVVDVNDNAPQLTIKTLSVPVK
              310       320       330       340       350       360

              370       380       390       400       410       420
pF1KB3 EDAPLSTVIALITVSDRDSGANGQVTCSLMPHVPFKLVSTFKNYYSLVLDSALDRESLSV
       ::: :.::::::.: : :. ::::::::: ::::::::::.::::::::: ::::::.:.
NP_114 EDAQLGTVIALISVIDLDADANGQVTCSLTPHVPFKLVSTYKNYYSLVLDRALDRESVSA
              370       380       390       400       410       420

              430       440       450       460       470       480
pF1KB3 YELVVTARDGGSPSLWATARVSVEVADVNDNAPAFAQPEYTVFVKENNPPGCHIFTVSAR
       ::::::::::::::::::::::::::::::::::::: ::::::::::::::::::::::
NP_114 YELVVTARDGGSPSLWATARVSVEVADVNDNAPAFAQSEYTVFVKENNPPGCHIFTVSAR
              430       440       450       460       470       480

              490       500       510       520       530       540
pF1KB3 DADAQENALVSYSLVERRVGERALSNYVSVHAESGKVYALQPLDHEELELLQFQVSARDA
       ::::::::::::::::::.:::.::.::::::::::::::::::::::::::::::::::
NP_114 DADAQENALVSYSLVERRLGERSLSSYVSVHAESGKVYALQPLDHEELELLQFQVSARDA
              490       500       510       520       530       540

              550       560       570       580       590       600
pF1KB3 GVPPLGSNVTLQVFVLDENDNAPALLAPRVGGTIGAVSELVPRLVGAGHVVAKVRAVDAD
       ::::::::::::::::::::::::::.::. :: :::::.: : :::: ::.::::::::
NP_114 GVPPLGSNVTLQVFVLDENDNAPALLTPRMRGTDGAVSEMVLRSVGAGVVVGKVRAVDAD
              550       560       570       580       590       600

              610       620       630       640       650       660
pF1KB3 SGYNAWLSYELQPAAGGARIPFRVGLYTGEISTTRVLDEADLSRYRLLVLVKDHGEPALT
       ::::::::::::: ...: ::::::::::::::::.:::.:  : :::::::::::::::
NP_114 SGYNAWLSYELQPETASASIPFRVGLYTGEISTTRALDETDAPRQRLLVLVKDHGEPALT
              610       620       630       640       650       660

              670       680       690       700       710       720
pF1KB3 ATATVLVSLVESGQAPKASSRASVGVAGPEAALVDVNVYLIIAICAVSSLLVLTLLLYTA
       :::::::::::::::::.:::::::..:::..:::::::::::::::::::::::::::.
NP_114 ATATVLVSLVESGQAPKSSSRASVGATGPEVTLVDVNVYLIIAICAVSSLLVLTLLLYTV
              670       680       690       700       710       720

              730       740       750       760       770       780
pF1KB3 LRCSVPPTEGAYVPGKPTLVCSSALGSWSNSQQRRQRVCSSEGPPKTDLMAFSPGLSPSL
       ::::. ::::  .:::::::::::.:::: ::::::::::.::  :::::::::::::  
NP_114 LRCSAMPTEGECAPGKPTLVCSSAVGSWSYSQQRRQRVCSGEGKQKTDLMAFSPGLSPCA
              730       740       750       760       770       780

              790       800       810       820       830       840
pF1KB3 NTSERNEQPEANLDLSGNPRQPNPDWRYSASLRAGMHSSVHLEEAGILRAGPGGPDQQWP
       ...::. .: :. : .:.::::::::::::::::::::::::::::::::::::::::::
NP_114 GSTERTGEPSASSDSTGKPRQPNPDWRYSASLRAGMHSSVHLEEAGILRAGPGGPDQQWP
              790       800       810       820       830       840

              850       860       870       880       890       900
pF1KB3 TVSSATPEPEAGEVSPPVGAGVNSNSWTFKYGPGNPKQSGPGELPDKFIIPGSPAIISIR
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_114 TVSSATPEPEAGEVSPPVGAGVNSNSWTFKYGPGNPKQSGPGELPDKFIIPGSPAIISIR
              850       860       870       880       890       900

              910       920       930       940       950
pF1KB3 QEPTNSQIDKSDFITFGKKEETKKKKKKKKGNKTQEKKEKGNSTTDNSDQ
       ::::::::::::::::::::::::::::::::::::::::::::::::::
NP_114 QEPTNSQIDKSDFITFGKKEETKKKKKKKKGNKTQEKKEKGNSTTDNSDQ
              910       920       930       940       950

>>NP_061725 (OMIM: 606317) protocadherin alpha-11 isofor  (949 aa)
 initn: 4995 init1: 3729 opt: 5000  Z-score: 4422.1  bits: 829.6 E(85289):    0
Smith-Waterman score: 5000; 81.9% identity (91.7% similar) in 948 aa overlap (3-950:4-949)

                10        20        30        40        50         
pF1KB3  MVFSRRGGLGARDLLLWLLLLAAWEVGSGQLHYSIPEEAKHGTFVGRVAQDLGLELAEL
          :.::: ::.  : ::::::  :::::::::::. :::::::::::.:::::::::::
NP_061 MFGFQRRG-LGTPRLQLWLLLLEFWEVGSGQLHYSVSEEAKHGTFVGRIAQDLGLELAEL
                10        20        30        40        50         

      60        70        80        90       100       110         
pF1KB3 VPRLFRVASKTHRDLLEVNLQNGILFVNSRIDREELCQWSAECSIHLELIADRPLQVFHV
       : :::::::::: ::::::::::::::::::::::::  :::::::::.:.:::::::::
NP_061 VQRLFRVASKTHGDLLEVNLQNGILFVNSRIDREELCGQSAECSIHLEVIVDRPLQVFHV
      60        70        80        90       100       110         

     120       130       140       150       160       170         
pF1KB3 EVKVKDINDNPPVFRGREQIIFIPESRLLNSRFPIEGAADADIGANALLTYTLSPSDYFS
       .:.:::::::::::  ::: ..: ::.  .::::.:::.::::  :::::: :: ..:::
NP_061 NVEVKDINDNPPVFSLREQKLLIAESKQSDSRFPLEGASDADIEENALLTYRLSKNEYFS
     120       130       140       150       160       170         

     180       190       200       210       220       230         
pF1KB3 LDVEASDELSKSLWLELRKYLDREETPELHLLLTATDGGKPELQGTVELLITVLDVNDNA
       ::  .. .  : : : :.: ::::.::::.::::::::::::: :::.::. ::::::: 
NP_061 LDSPTNGKQIKRLSLILKKSLDREKTPELNLLLTATDGGKPELTGTVRLLVQVLDVNDND
     180       190       200       210       220       230         

     240       250       260       270       280       290         
pF1KB3 PLFDQAVYRVHLLETTANGTLVTTLNASDADEGVNGEVVFSFDSGISRDIQEKFKVDSSS
       : ::.. :.: :.:..:. :::  :::.: ::::::::..:. : :. . .. : .:...
NP_061 PEFDKSEYKVSLMENAAKETLVLKLNATDRDEGVNGEVTYSLMS-IKPNGRHLFTLDQNN
     240       250       260       270       280        290        

     300       310       320       330       340       350         
pF1KB3 GEIRLIDKLDYEETKSYEIQVKAVDKGSPPMSNHCKVLVKVLDVNDNAPELAVTSLYLPI
       ::.:.   :::::.: :.:.:.:.:::.:::..:: : :..::.:::.::.::::: ::.
NP_061 GEVRVNGTLDYEENKFYKIEVQATDKGTPPMAGHCTVWVEILDTNDNSPEVAVTSLSLPV
      300       310       320       330       340       350        

     360       370       380       390       400       410         
pF1KB3 REDAPLSTVIALITVSDRDSGANGQVTCSLMPHVPFKLVSTFKNYYSLVLDSALDRESLS
       ::::  :::::::.:::::::.:::::::: ::::::::::::::::::::::::::.. 
NP_061 REDAQPSTVIALISVSDRDSGVNGQVTCSLTPHVPFKLVSTFKNYYSLVLDSALDRENVW
      360       370       380       390       400       410        

     420       430       440       450       460       470         
pF1KB3 VYELVVTARDGGSPSLWATARVSVEVADVNDNAPAFAQPEYTVFVKENNPPGCHIFTVSA
       .:::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_061 AYELVVTARDGGSPSLWATARVSVEVADVNDNAPAFAQPEYTVFVKENNPPGCHIFTVSA
      420       430       440       450       460       470        

     480       490       500       510       520       530         
pF1KB3 RDADAQENALVSYSLVERRVGERALSNYVSVHAESGKVYALQPLDHEELELLQFQVSARD
       :::::::::::::::::::.:.::::.:::::::::::::::::::::::::::::::::
NP_061 RDADAQENALVSYSLVERRLGDRALSSYVSVHAESGKVYALQPLDHEELELLQFQVSARD
      480       490       500       510       520       530        

     540       550       560       570       580       590         
pF1KB3 AGVPPLGSNVTLQVFVLDENDNAPALLAPRVGGTIGAVSELVPRLVGAGHVVAKVRAVDA
       ::::::.::::::::::::::::::::: ..:.. :::..:::: :::::::::::::::
NP_061 AGVPPLSSNVTLQVFVLDENDNAPALLATQAGSAGGAVNKLVPRSVGAGHVVAKVRAVDA
      540       550       560       570       580       590        

     600       610       620       630       640       650         
pF1KB3 DSGYNAWLSYELQPAAGGARIPFRVGLYTGEISTTRVLDEADLSRYRLLVLVKDHGEPAL
       ::::::::::::::::::.:::::::::::::::::.:::::  :.::::::::::::::
NP_061 DSGYNAWLSYELQPAAGGSRIPFRVGLYTGEISTTRALDEADSPRHRLLVLVKDHGEPAL
      600       610       620       630       640       650        

     660       670       680       690       700       710         
pF1KB3 TATATVLVSLVESGQAPKASSRASVGVAGPEAALVDVNVYLIIAICAVSSLLVLTLLLYT
       ::::::::::::::::::::::. .:.:.:::::::::::::::::.:::::::::::::
NP_061 TATATVLVSLVESGQAPKASSRTLAGAASPEAALVDVNVYLIIAICVVSSLLVLTLLLYT
      660       670       680       690       700       710        

     720       730       740       750       760       770         
pF1KB3 ALRCSVPPTEGAYVPGKPTLVCSSALGSWSNSQQRRQRVCSSEGPPKTDLMAFSPGLSPS
       ::  :. ::::: .::::::::: :.:::: :::::::::: :::::::::::::.:  .
NP_061 ALWWSATPTEGACAPGKPTLVCSRAVGSWSYSQQRRQRVCSEEGPPKTDLMAFSPSLPLG
      720       730       740       750       760       770        

     780       790       800       810       820       830         
pF1KB3 LNTSERNEQPEANLDLSGNPRQPNPDWRYSASLRAGMHSSVHLEEAGILRAGPGGPDQQW
       ::  :..:. : . .  :.:::::::::::::::::::::::::::::::::::::::::
NP_061 LNKEEEGERQEPGSNHPGQPRQPNPDWRYSASLRAGMHSSVHLEEAGILRAGPGGPDQQW
      780       790       800       810       820       830        

     840       850       860       870       880       890         
pF1KB3 PTVSSATPEPEAGEVSPPVGAGVNSNSWTFKYGPGNPKQSGPGELPDKFIIPGSPAIISI
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_061 PTVSSATPEPEAGEVSPPVGAGVNSNSWTFKYGPGNPKQSGPGELPDKFIIPGSPAIISI
      840       850       860       870       880       890        

     900       910       920       930       940       950
pF1KB3 RQEPTNSQIDKSDFITFGKKEETKKKKKKKKGNKTQEKKEKGNSTTDNSDQ
       :::::::::::::::::::::::::::::::::::::::::::::::::::
NP_061 RQEPTNSQIDKSDFITFGKKEETKKKKKKKKGNKTQEKKEKGNSTTDNSDQ
      900       910       920       930       940         




950 residues in 1 query   sequences
60827320 residues in 85289 library sequences
 Tcomplib [36.3.4 Apr, 2011] (8 proc)
 start: Thu Nov  3 12:45:05 2016 done: Thu Nov  3 12:45:07 2016
 Total Scan time: 14.160 Total Display time:  0.400

Function used was FASTA [36.3.4 Apr, 2011]
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