Result of FASTA (ccds) for pF1KB3283
FASTA searches a protein or DNA sequence data bank 36.3.4 Apr, 2011
Please cite:
W.R. Pearson & D.J. Lipman PNAS (1988) 85:2444-2448

Query: pF1KB3283, 1189 aa
  1>>>pF1KB3283 1189 - 1189 aa - 1189 aa
Library: human.CCDS.faa
  18511270 residues in 32554 sequences

Statistics:  Expectation_n fit: rho(ln(x))= 7.6161+/-0.000875; mu= 14.4728+/- 0.053
 mean_var=194.8709+/-38.553, 0's: 0 Z-trim(114.6): 43  B-trim: 139 in 1/51
 Lambda= 0.091876
 statistics sampled from 15093 (15131) to 15093 sequences
Algorithm: FASTA (3.7 Nov 2010) [optimized]
Parameters: BL50 matrix (15:-5), open/ext: -10/-2
 ktup: 2, E-join: 1 (0.778), E-opt: 0.2 (0.465), width:  16
 Scan time:  6.180

The best scores are:                                      opt bits E(32554)
CCDS6022.1 HR gene_id:55806|Hs108|chr8             (1189) 8569 1149.1       0
CCDS6023.1 HR gene_id:55806|Hs108|chr8             (1134) 7754 1041.1       0


>>CCDS6022.1 HR gene_id:55806|Hs108|chr8                  (1189 aa)
 initn: 8569 init1: 8569 opt: 8569  Z-score: 6145.4  bits: 1149.1 E(32554):    0
Smith-Waterman score: 8569; 99.9% identity (99.9% similar) in 1189 aa overlap (1-1189:1-1189)

               10        20        30        40        50        60
pF1KB3 MESTPSFLKGTPTWEKTAPENGIVRQEPGSPPRDGLHHGPLCLGEPAPFWRGVLSTPDSW
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS60 MESTPSFLKGTPTWEKTAPENGIVRQEPGSPPRDGLHHGPLCLGEPAPFWRGVLSTPDSW
               10        20        30        40        50        60

               70        80        90       100       110       120
pF1KB3 LPPGFPQGPKDMLPLVEGEGPQNGERKVNWLGSKEGLRWKEAMLTHPLAFCGPACPPRCG
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS60 LPPGFPQGPKDMLPLVEGEGPQNGERKVNWLGSKEGLRWKEAMLTHPLAFCGPACPPRCG
               70        80        90       100       110       120

              130       140       150       160       170       180
pF1KB3 PLMPEHSGGHLKSDPVAFRPWHCPFLLETKILERAPFWVPTCLPPYLVSGLPPEHPCDWP
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS60 PLMPEHSGGHLKSDPVAFRPWHCPFLLETKILERAPFWVPTCLPPYLVSGLPPEHPCDWP
              130       140       150       160       170       180

              190       200       210       220       230       240
pF1KB3 LTPHPWVYSGGQPKVPSAFSLGSKGFYYKDPSIPRLAKEPLAAAEPGLFGLNSGGHLQRA
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS60 LTPHPWVYSGGQPKVPSAFSLGSKGFYYKDPSIPRLAKEPLAAAEPGLFGLNSGGHLQRA
              190       200       210       220       230       240

              250       260       270       280       290       300
pF1KB3 GEAERPSLHQRDGEMGAGRQQNPCPLFLGQPDTVPWTSWPACPPGLVHTLGNVWAGPGDG
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS60 GEAERPSLHQRDGEMGAGRQQNPCPLFLGQPDTVPWTSWPACPPGLVHTLGNVWAGPGDG
              250       260       270       280       290       300

              310       320       330       340       350       360
pF1KB3 NLGYQLGPPATPRCPSPEPPVTQRGCCSSYPPTKGGDLGPCGKCQEGLEGGASGASEPSE
       :::::::::::::::::::::::::::::::::::: :::::::::::::::::::::::
CCDS60 NLGYQLGPPATPRCPSPEPPVTQRGCCSSYPPTKGGGLGPCGKCQEGLEGGASGASEPSE
              310       320       330       340       350       360

              370       380       390       400       410       420
pF1KB3 EVNKASGPRACPPSHHTKLKKTWLTRHSEQFECPRGCPEVEERPVARLRALKRAGSPEVQ
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS60 EVNKASGPRACPPSHHTKLKKTWLTRHSEQFECPRGCPEVEERPVARLRALKRAGSPEVQ
              370       380       390       400       410       420

              430       440       450       460       470       480
pF1KB3 GAMGSPAPKRPPDPFPGTAEQGAGGWQEVRDTSIGNKDVDSGQHDEQKGPQDGQASLQDP
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS60 GAMGSPAPKRPPDPFPGTAEQGAGGWQEVRDTSIGNKDVDSGQHDEQKGPQDGQASLQDP
              430       440       450       460       470       480

              490       500       510       520       530       540
pF1KB3 GLQDIPCLALPAKLAQCQSCAQAAGEGGGHACHSQQVRRSPLGGELQQEEDTATNSSSEE
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS60 GLQDIPCLALPAKLAQCQSCAQAAGEGGGHACHSQQVRRSPLGGELQQEEDTATNSSSEE
              490       500       510       520       530       540

              550       560       570       580       590       600
pF1KB3 GPGSGPDSRLSTGLAKHLLSGLGDRLCRLLRREREALAWAQREGQGPAVTEDSPGIPRCC
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS60 GPGSGPDSRLSTGLAKHLLSGLGDRLCRLLRREREALAWAQREGQGPAVTEDSPGIPRCC
              550       560       570       580       590       600

              610       620       630       640       650       660
pF1KB3 SRCHHGLFNTHWRCPRCSHRLCVACGRVAGTGRAREKAGFQEQSAEECTQEAGHAACSLM
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS60 SRCHHGLFNTHWRCPRCSHRLCVACGRVAGTGRAREKAGFQEQSAEECTQEAGHAACSLM
              610       620       630       640       650       660

              670       680       690       700       710       720
pF1KB3 LTQFVSSQALAELSTAMHQVWVKFDIRGHCPCQADARVWAPGDAGQQKESTQKTPPTPQP
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS60 LTQFVSSQALAELSTAMHQVWVKFDIRGHCPCQADARVWAPGDAGQQKESTQKTPPTPQP
              670       680       690       700       710       720

              730       740       750       760       770       780
pF1KB3 SCNGDTHRTKSIKEETPDSAETPAEDRAGRGPLPCPSLCELLASTAVKLCLGHERIHMAF
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS60 SCNGDTHRTKSIKEETPDSAETPAEDRAGRGPLPCPSLCELLASTAVKLCLGHERIHMAF
              730       740       750       760       770       780

              790       800       810       820       830       840
pF1KB3 APVTPALPSDDRITNILDSIIAQVVERKIQEKALGPGLRAGPGLRKGLGLPLSPVRPRLP
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS60 APVTPALPSDDRITNILDSIIAQVVERKIQEKALGPGLRAGPGLRKGLGLPLSPVRPRLP
              790       800       810       820       830       840

              850       860       870       880       890       900
pF1KB3 PPGALLWLQEPQPCPRRGFHLFQEHWRQGQPVLVSGIQRTLQGNLWGTEALGALGGQVQA
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS60 PPGALLWLQEPQPCPRRGFHLFQEHWRQGQPVLVSGIQRTLQGNLWGTEALGALGGQVQA
              850       860       870       880       890       900

              910       920       930       940       950       960
pF1KB3 LSPLGPPQPSSLGSTTFWEGFSWPELRPKSDEGSVLLLHRALGDEDTSRVENLAASLPLP
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS60 LSPLGPPQPSSLGSTTFWEGFSWPELRPKSDEGSVLLLHRALGDEDTSRVENLAASLPLP
              910       920       930       940       950       960

              970       980       990      1000      1010      1020
pF1KB3 EYCALHGKLNLASYLPPGLALRPLEPQLWAAYGVSPHRGHLGTKNLCVEVADLVSILVHA
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS60 EYCALHGKLNLASYLPPGLALRPLEPQLWAAYGVSPHRGHLGTKNLCVEVADLVSILVHA
              970       980       990      1000      1010      1020

             1030      1040      1050      1060      1070      1080
pF1KB3 DTPLPAWHRAQKDFLSGLDGEGLWSPGSQVSTVWHVFRAQDAQRIRRFLQMVCPAGAGAL
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS60 DTPLPAWHRAQKDFLSGLDGEGLWSPGSQVSTVWHVFRAQDAQRIRRFLQMVCPAGAGAL
             1030      1040      1050      1060      1070      1080

             1090      1100      1110      1120      1130      1140
pF1KB3 EPGAPGSCYLDAGLRRRLREEWGVSCWTLLQAPGEAVLVPAGAPHQVQGLVSTVSVTQHF
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS60 EPGAPGSCYLDAGLRRRLREEWGVSCWTLLQAPGEAVLVPAGAPHQVQGLVSTVSVTQHF
             1090      1100      1110      1120      1130      1140

             1150      1160      1170      1180         
pF1KB3 LSPETSALSAQLCHQGPSLPPDCHLLYAQMDWAVFQAVKVAVGTLQEAK
       :::::::::::::::::::::::::::::::::::::::::::::::::
CCDS60 LSPETSALSAQLCHQGPSLPPDCHLLYAQMDWAVFQAVKVAVGTLQEAK
             1150      1160      1170      1180         

>>CCDS6023.1 HR gene_id:55806|Hs108|chr8                  (1134 aa)
 initn: 7754 init1: 7754 opt: 7754  Z-score: 5561.8  bits: 1041.1 E(32554):    0
Smith-Waterman score: 8049; 95.3% identity (95.3% similar) in 1189 aa overlap (1-1189:1-1134)

               10        20        30        40        50        60
pF1KB3 MESTPSFLKGTPTWEKTAPENGIVRQEPGSPPRDGLHHGPLCLGEPAPFWRGVLSTPDSW
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS60 MESTPSFLKGTPTWEKTAPENGIVRQEPGSPPRDGLHHGPLCLGEPAPFWRGVLSTPDSW
               10        20        30        40        50        60

               70        80        90       100       110       120
pF1KB3 LPPGFPQGPKDMLPLVEGEGPQNGERKVNWLGSKEGLRWKEAMLTHPLAFCGPACPPRCG
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS60 LPPGFPQGPKDMLPLVEGEGPQNGERKVNWLGSKEGLRWKEAMLTHPLAFCGPACPPRCG
               70        80        90       100       110       120

              130       140       150       160       170       180
pF1KB3 PLMPEHSGGHLKSDPVAFRPWHCPFLLETKILERAPFWVPTCLPPYLVSGLPPEHPCDWP
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS60 PLMPEHSGGHLKSDPVAFRPWHCPFLLETKILERAPFWVPTCLPPYLVSGLPPEHPCDWP
              130       140       150       160       170       180

              190       200       210       220       230       240
pF1KB3 LTPHPWVYSGGQPKVPSAFSLGSKGFYYKDPSIPRLAKEPLAAAEPGLFGLNSGGHLQRA
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS60 LTPHPWVYSGGQPKVPSAFSLGSKGFYYKDPSIPRLAKEPLAAAEPGLFGLNSGGHLQRA
              190       200       210       220       230       240

              250       260       270       280       290       300
pF1KB3 GEAERPSLHQRDGEMGAGRQQNPCPLFLGQPDTVPWTSWPACPPGLVHTLGNVWAGPGDG
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS60 GEAERPSLHQRDGEMGAGRQQNPCPLFLGQPDTVPWTSWPACPPGLVHTLGNVWAGPGDG
              250       260       270       280       290       300

              310       320       330       340       350       360
pF1KB3 NLGYQLGPPATPRCPSPEPPVTQRGCCSSYPPTKGGDLGPCGKCQEGLEGGASGASEPSE
       :::::::::::::::::::::::::::::::::::: :::::::::::::::::::::::
CCDS60 NLGYQLGPPATPRCPSPEPPVTQRGCCSSYPPTKGGGLGPCGKCQEGLEGGASGASEPSE
              310       320       330       340       350       360

              370       380       390       400       410       420
pF1KB3 EVNKASGPRACPPSHHTKLKKTWLTRHSEQFECPRGCPEVEERPVARLRALKRAGSPEVQ
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS60 EVNKASGPRACPPSHHTKLKKTWLTRHSEQFECPRGCPEVEERPVARLRALKRAGSPEVQ
              370       380       390       400       410       420

              430       440       450       460       470       480
pF1KB3 GAMGSPAPKRPPDPFPGTAEQGAGGWQEVRDTSIGNKDVDSGQHDEQKGPQDGQASLQDP
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS60 GAMGSPAPKRPPDPFPGTAEQGAGGWQEVRDTSIGNKDVDSGQHDEQKGPQDGQASLQDP
              430       440       450       460       470       480

              490       500       510       520       530       540
pF1KB3 GLQDIPCLALPAKLAQCQSCAQAAGEGGGHACHSQQVRRSPLGGELQQEEDTATNSSSEE
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS60 GLQDIPCLALPAKLAQCQSCAQAAGEGGGHACHSQQVRRSPLGGELQQEEDTATNSSSEE
              490       500       510       520       530       540

              550       560       570       580       590       600
pF1KB3 GPGSGPDSRLSTGLAKHLLSGLGDRLCRLLRREREALAWAQREGQGPAVTEDSPGIPRCC
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS60 GPGSGPDSRLSTGLAKHLLSGLGDRLCRLLRREREALAWAQREGQGPAVTEDSPGIPRCC
              550       560       570       580       590       600

              610       620       630       640       650       660
pF1KB3 SRCHHGLFNTHWRCPRCSHRLCVACGRVAGTGRAREKAGFQEQSAEECTQEAGHAACSLM
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS60 SRCHHGLFNTHWRCPRCSHRLCVACGRVAGTGRAREKAGFQEQSAEECTQEAGHAACSLM
              610       620       630       640       650       660

              670       680       690       700       710       720
pF1KB3 LTQFVSSQALAELSTAMHQVWVKFDIRGHCPCQADARVWAPGDAGQQKESTQKTPPTPQP
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS60 LTQFVSSQALAELSTAMHQVWVKFDIRGHCPCQADARVWAPGDAGQQKESTQKTPPTPQP
              670       680       690       700       710       720

              730       740       750       760       770       780
pF1KB3 SCNGDTHRTKSIKEETPDSAETPAEDRAGRGPLPCPSLCELLASTAVKLCLGHERIHMAF
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS60 SCNGDTHRTKSIKEETPDSAETPAEDRAGRGPLPCPSLCELLASTAVKLCLGHERIHMAF
              730       740       750       760       770       780

              790       800       810       820       830       840
pF1KB3 APVTPALPSDDRITNILDSIIAQVVERKIQEKALGPGLRAGPGLRKGLGLPLSPVRPRLP
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS60 APVTPALPSDDRITNILDSIIAQVVERKIQEKALGPGLRAGPGLRKGLGLPLSPVRPRLP
              790       800       810       820       830       840

              850       860       870       880       890       900
pF1KB3 PPGALLWLQEPQPCPRRGFHLFQEHWRQGQPVLVSGIQRTLQGNLWGTEALGALGGQVQA
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS60 PPGALLWLQEPQPCPRRGFHLFQEHWRQGQPVLVSGIQRTLQGNLWGTEALGALGGQVQA
              850       860       870       880       890       900

              910       920       930       940       950       960
pF1KB3 LSPLGPPQPSSLGSTTFWEGFSWPELRPKSDEGSVLLLHRALGDEDTSRVENLAASLPLP
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS60 LSPLGPPQPSSLGSTTFWEGFSWPELRPKSDEGSVLLLHRALGDEDTSRVENLAASLPLP
              910       920       930       940       950       960

              970       980       990      1000      1010      1020
pF1KB3 EYCALHGKLNLASYLPPGLALRPLEPQLWAAYGVSPHRGHLGTKNLCVEVADLVSILVHA
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS60 EYCALHGKLNLASYLPPGLALRPLEPQLWAAYGVSPHRGHLGTKNLCVEVADLVSILVHA
              970       980       990      1000      1010      1020

             1030      1040      1050      1060      1070      1080
pF1KB3 DTPLPAWHRAQKDFLSGLDGEGLWSPGSQVSTVWHVFRAQDAQRIRRFLQMVCPAGAGAL
       ::::::::::::::::::::::::::::::::::::::::::::::::::::        
CCDS60 DTPLPAWHRAQKDFLSGLDGEGLWSPGSQVSTVWHVFRAQDAQRIRRFLQMV--------
             1030      1040      1050      1060      1070          

             1090      1100      1110      1120      1130      1140
pF1KB3 EPGAPGSCYLDAGLRRRLREEWGVSCWTLLQAPGEAVLVPAGAPHQVQGLVSTVSVTQHF
                                                      :::::::::::::
CCDS60 -----------------------------------------------QGLVSTVSVTQHF
                                                          1080     

             1150      1160      1170      1180         
pF1KB3 LSPETSALSAQLCHQGPSLPPDCHLLYAQMDWAVFQAVKVAVGTLQEAK
       :::::::::::::::::::::::::::::::::::::::::::::::::
CCDS60 LSPETSALSAQLCHQGPSLPPDCHLLYAQMDWAVFQAVKVAVGTLQEAK
        1090      1100      1110      1120      1130    




1189 residues in 1 query   sequences
18511270 residues in 32554 library sequences
 Tcomplib [36.3.4 Apr, 2011] (8 proc)
 start: Thu Nov  3 12:43:31 2016 done: Thu Nov  3 12:43:32 2016
 Total Scan time:  6.180 Total Display time:  0.070

Function used was FASTA [36.3.4 Apr, 2011]
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