Result of FASTA (ccds) for pF1KB3093
FASTA searches a protein or DNA sequence data bank 36.3.4 Apr, 2011
Please cite:
W.R. Pearson & D.J. Lipman PNAS (1988) 85:2444-2448

Query: pF1KB3093, 745 aa
  1>>>pF1KB3093 745 - 745 aa - 745 aa
Library: human.CCDS.faa
  18511270 residues in 32554 sequences

Statistics:  Expectation_n fit: rho(ln(x))= 6.5519+/-0.00117; mu= 12.8948+/- 0.069
 mean_var=72.3883+/-14.910, 0's: 0 Z-trim(102.1): 49  B-trim: 301 in 1/48
 Lambda= 0.150744
 statistics sampled from 6785 (6820) to 6785 sequences
Algorithm: FASTA (3.7 Nov 2010) [optimized]
Parameters: BL50 matrix (15:-5), open/ext: -10/-2
 ktup: 2, E-join: 1 (0.572), E-opt: 0.2 (0.209), width:  16
 Scan time:  3.760

The best scores are:                                      opt bits E(32554)
CCDS11407.1 JUP gene_id:3728|Hs108|chr17           ( 745) 4830 1060.4       0
CCDS2694.1 CTNNB1 gene_id:1499|Hs108|chr3          ( 781) 3164 698.0 1.4e-200


>>CCDS11407.1 JUP gene_id:3728|Hs108|chr17                (745 aa)
 initn: 4830 init1: 4830 opt: 4830  Z-score: 5673.0  bits: 1060.4 E(32554):    0
Smith-Waterman score: 4830; 99.9% identity (100.0% similar) in 745 aa overlap (1-745:1-745)

               10        20        30        40        50        60
pF1KB3 MEVMNLMEQPIKVTEWQQTYTYDSGIHSGANTCVPSVSSKGIMEEDEACGRQYTLKKTTT
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS11 MEVMNLMEQPIKVTEWQQTYTYDSGIHSGANTCVPSVSSKGIMEEDEACGRQYTLKKTTT
               10        20        30        40        50        60

               70        80        90       100       110       120
pF1KB3 YTQGVPPSQGDLEYQMSTTARAKRVREAMCPGVSGEDSSLLLATQVEGQATNLQRLAEPS
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS11 YTQGVPPSQGDLEYQMSTTARAKRVREAMCPGVSGEDSSLLLATQVEGQATNLQRLAEPS
               70        80        90       100       110       120

              130       140       150       160       170       180
pF1KB3 QLLKSAIVHLINYQDDAELATRALPELTKLLNDEDPVVVTKAAMIVNQLSKKEASRRALM
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS11 QLLKSAIVHLINYQDDAELATRALPELTKLLNDEDPVVVTKAAMIVNQLSKKEASRRALM
              130       140       150       160       170       180

              190       200       210       220       230       240
pF1KB3 GSPQLVAAVVRTMQNTSDLDTARCTTSILHNLSHHREGLLAIFKSGGIPALVRMLSSPVE
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS11 GSPQLVAAVVRTMQNTSDLDTARCTTSILHNLSHHREGLLAIFKSGGIPALVRMLSSPVE
              190       200       210       220       230       240

              250       260       270       280       290       300
pF1KB3 SVLFYAITTLHNLLLYQEGAKMAVRLADGLQKMVPLLNKNNPKFLAITTDCLQLLAYGNQ
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS11 SVLFYAITTLHNLLLYQEGAKMAVRLADGLQKMVPLLNKNNPKFLAITTDCLQLLAYGNQ
              250       260       270       280       290       300

              310       320       330       340       350       360
pF1KB3 ESKLIILANGGPQALVQIMRNYSYEKLLWTTSRVLKVLSVCPSNKPAIVEAGGMQALGKH
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS11 ESKLIILANGGPQALVQIMRNYSYEKLLWTTSRVLKVLSVCPSNKPAIVEAGGMQALGKH
              310       320       330       340       350       360

              370       380       390       400       410       420
pF1KB3 LTSNSPRLVQNCLWTLRNLSDVATKQEGLESVLKILVNQLSVDDVNVLTCATGTLSNLTC
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS11 LTSNSPRLVQNCLWTLRNLSDVATKQEGLESVLKILVNQLSVDDVNVLTCATGTLSNLTC
              370       380       390       400       410       420

              430       440       450       460       470       480
pF1KB3 NNSKNKTLVTQNSGVEALIHAILRAGDKDDITEPAVCALRHLTSRHPEAEMAQNSVRLNY
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS11 NNSKNKTLVTQNSGVEALIHAILRAGDKDDITEPAVCALRHLTSRHPEAEMAQNSVRLNY
              430       440       450       460       470       480

              490       500       510       520       530       540
pF1KB3 GIPAIVKLLNQPNQWPLVKATIGLIRNLALCPANHAPLQEAAVIPRLVQLLVKAHQDAQR
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS11 GIPAIVKLLNQPNQWPLVKATIGLIRNLALCPANHAPLQEAAVIPRLVQLLVKAHQDAQR
              490       500       510       520       530       540

              550       560       570       580       590       600
pF1KB3 HVAAGTQQPYTDGVRMEEIVEGCTGALHILARDPMNRMEIFRLNTIPLFVQLLYSSVENI
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS11 HVAAGTQQPYTDGVRMEEIVEGCTGALHILARDPMNRMEIFRLNTIPLFVQLLYSSVENI
              550       560       570       580       590       600

              610       620       630       640       650       660
pF1KB3 QRVAAGVLCELAQDKEAADAIDAEGASAPLMELLHSRNEGTATYAAAVLFRISEDKNPDY
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS11 QRVAAGVLCELAQDKEAADAIDAEGASAPLMELLHSRNEGTATYAAAVLFRISEDKNPDY
              610       620       630       640       650       660

              670       680       690       700       710       720
pF1KB3 RKRVSVELTNSLFKHDPAAWEAAQSMIPINEPYGDDLDATYRPMYSSDVPLDPLEMHMDM
       ::::::::::::::::::::::::::::::::::::.:::::::::::::::::::::::
CCDS11 RKRVSVELTNSLFKHDPAAWEAAQSMIPINEPYGDDMDATYRPMYSSDVPLDPLEMHMDM
              670       680       690       700       710       720

              730       740     
pF1KB3 DGDYPIDTYSDGLRPPYPTADHMLA
       :::::::::::::::::::::::::
CCDS11 DGDYPIDTYSDGLRPPYPTADHMLA
              730       740     

>>CCDS2694.1 CTNNB1 gene_id:1499|Hs108|chr3               (781 aa)
 initn: 3118 init1: 2428 opt: 3164  Z-score: 3714.5  bits: 698.0 E(32554): 1.4e-200
Smith-Waterman score: 3187; 68.5% identity (85.1% similar) in 752 aa overlap (1-731:8-755)

                      10          20        30        40        50 
pF1KB3        MEVMNLMEQPIK--VTEWQQTYTYDSGIHSGANTCVPSVSSKGIMEEDEACGR
              ::.   ::   :  :..:::    ::::::::.: .::.:.::  ::...   
CCDS26 MATQADLMELDMAMEPDRKAAVSHWQQQSYLDSGIHSGATTTAPSLSGKGNPEEEDVDTS
               10        20        30        40        50        60

              60         70        80        90       100          
pF1KB3 QYTLKKTTTYTQGVPPSQ-GDLEYQMSTTARAKRVREAMCPGVSGEDSSLLLATQVEG-Q
       :   .    ..:.    : .:.. :.. : ::.::: :: : .  :  ..  .:: .. .
CCDS26 QVLYEWEQGFSQSFTQEQVADIDGQYAMT-RAQRVRAAMFPETLDEGMQIP-STQFDAAH
               70        80         90       100       110         

     110       120       130       140       150       160         
pF1KB3 ATNLQRLAEPSQLLKSAIVHLINYQDDAELATRALPELTKLLNDEDPVVVTKAAMIVNQL
        ::.::::::::.:: :.:.::::::::::::::.::::::::::: :::.:::..:.::
CCDS26 PTNVQRLAEPSQMLKHAVVNLINYQDDAELATRAIPELTKLLNDEDQVVVNKAAVMVHQL
      120       130       140       150       160       170        

     170       180       190       200       210       220         
pF1KB3 SKKEASRRALMGSPQLVAAVVRTMQNTSDLDTARCTTSILHNLSHHREGLLAIFKSGGIP
       :::::::.:.: :::.:.:.:::::::.:..:::::.. :::::::::::::::::::::
CCDS26 SKKEASRHAIMRSPQMVSAIVRTMQNTNDVETARCTAGTLHNLSHHREGLLAIFKSGGIP
      180       190       200       210       220       230        

     230       240       250       260       270       280         
pF1KB3 ALVRMLSSPVESVLFYAITTLHNLLLYQEGAKMAVRLADGLQKMVPLLNKNNPKFLAITT
       :::.::.:::.:::::::::::::::.::::::::::: :::::: ::::.: :::::::
CCDS26 ALVKMLGSPVDSVLFYAITTLHNLLLHQEGAKMAVRLAGGLQKMVALLNKTNVKFLAITT
      240       250       260       270       280       290        

     290       300       310       320       330       340         
pF1KB3 DCLQLLAYGNQESKLIILANGGPQALVQIMRNYSYEKLLWTTSRVLKVLSVCPSNKPAIV
       ::::.::::::::::::::.:::::::.:::.:.:::::::::::::::::: :::::::
CCDS26 DCLQILAYGNQESKLIILASGGPQALVNIMRTYTYEKLLWTTSRVLKVLSVCSSNKPAIV
      300       310       320       330       340       350        

     350       360       370       380       390       400         
pF1KB3 EAGGMQALGKHLTSNSPRLVQNCLWTLRNLSDVATKQEGLESVLKILVNQLSVDDVNVLT
       ::::::::: :::. : :::::::::::::::.::::::.:..:  ::. :. ::.::.:
CCDS26 EAGGMQALGLHLTDPSQRLVQNCLWTLRNLSDAATKQEGMEGLLGTLVQLLGSDDINVVT
      360       370       380       390       400       410        

     410       420       430       440       450       460         
pF1KB3 CATGTLSNLTCNNSKNKTLVTQNSGVEALIHAILRAGDKDDITEPAVCALRHLTSRHPEA
       ::.: :::::::: ::: .: : .:.:::....:::::..::::::.:::::::::: ::
CCDS26 CAAGILSNLTCNNYKNKMMVCQVGGIEALVRTVLRAGDREDITEPAICALRHLTSRHQEA
      420       430       440       450       460       470        

     470       480       490       500       510       520         
pF1KB3 EMAQNSVRLNYGIPAIVKLLNQPNQWPLVKATIGLIRNLALCPANHAPLQEAAVIPRLVQ
       :::::.:::.::.:..::::. :..:::.:::.::::::::::::::::.: ..::::::
CCDS26 EMAQNAVRLHYGLPVVVKLLHPPSHWPLIKATVGLIRNLALCPANHAPLREQGAIPRLVQ
      480       490       500       510       520       530        

     530       540        550       560       570       580        
pF1KB3 LLVKAHQDAQRHVA-AGTQQPYTDGVRMEEIVEGCTGALHILARDPMNRMEIFRLNTIPL
       :::.::::.::... .:::: ...:::::::::::::::::::::  ::. :  ::::::
CCDS26 LLVRAHQDTQRRTSMGGTQQQFVEGVRMEEIVEGCTGALHILARDVHNRIVIRGLNTIPL
      540       550       560       570       580       590        

      590       600       610       620       630       640        
pF1KB3 FVQLLYSSVENIQRVAAGVLCELAQDKEAADAIDAEGASAPLMELLHSRNEGTATYAAAV
       ::::::: .:::::::::::::::::::::.::.::::.::: :::::::::.:::::::
CCDS26 FVQLLYSPIENIQRVAAGVLCELAQDKEAAEAIEAEGATAPLTELLHSRNEGVATYAAAV
      600       610       620       630       640       650        

      650       660       670       680        690            700  
pF1KB3 LFRISEDKNPDYRKRVSVELTNSLFKHDPAAW-EAAQSMIPIN---EPYG--DDLDATYR
       :::.::::  ::.::.:::::.:::. .: :: :.:.  . :.   :: :  .: : .::
CCDS26 LFRMSEDKPQDYKKRLSVELTSSLFRTEPMAWNETADLGLDIGAQGEPLGYRQD-DPSYR
      660       670       680       690       700       710        

                 710       720            730       740            
pF1KB3 PMYSSD-----VPLDPLEMHMDMDG-----DYPIDTYSDGLRPPYPTADHMLA       
        ..:.      . .::. :. .: :     :::.:   :                     
CCDS26 SFHSGGYGQDALGMDPM-MEHEMGGHHPGADYPVDGLPDLGHAQDLMDGLPPGDSNQLAW
       720       730        740       750       760       770      

CCDS26 FDTDL
        780 




745 residues in 1 query   sequences
18511270 residues in 32554 library sequences
 Tcomplib [36.3.4 Apr, 2011] (8 proc)
 start: Thu Nov  3 12:21:46 2016 done: Thu Nov  3 12:21:47 2016
 Total Scan time:  3.760 Total Display time:  0.050

Function used was FASTA [36.3.4 Apr, 2011]
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