GENSCAN 1.0	Date run:  3-Nov-116	Time: 12:02:55

Sequence gi568815588r:101479456_101687360 : 207905 bp : 45.02% C+G : Isochore 2 (43 - 51 C+G%)

Parameter matrix: HumanIso.smat

Predicted genes/exons:

Gn.Ex Type S .Begin ...End .Len Fr Ph I/Ac Do/T CodRg P.... Tscr..
----- ---- - ------ ------ ---- -- -- ---- ---- ----- ----- ------

 1.01 Intr +  10837  10957  121  0  1  125   85   -25 0.049   0.97
 1.02 Intr +  36454  36554  101  2  2   78   73    28 0.197   0.13
 1.03 Intr +  42184  42415  232  0  1   80   91    92 0.690   6.05
 1.04 Intr +  46558  46697  140  2  2   43   37   142 0.562   4.78
 1.05 Intr +  52840  52977  138  0  0  125  100    33 0.952   8.86
 1.06 Intr +  53497  53615  119  0  2   48   75    90 0.894   2.96
 1.07 Intr +  55206  55455  250  0  1   66   85   176 0.679  12.54
 1.08 Intr +  55899  56017  119  2  2  116   99    15 0.945   4.66
 1.09 Intr +  57088  57198  111  1  0  110   92   124 0.991  14.49
 1.10 Intr +  58838  58916   79  2  1   99   83    26 0.882   2.75
 1.11 Term +  71244  71405  162  2  0   82   36   139 0.751   6.04
 1.12 PlyA +  71711  71716    6                               1.05

 2.00 Prom +  82705  82744   40                              -7.46
 2.01 Sngl +  87028  87342  315  0  0   40   47   256 0.820  10.65
 2.02 PlyA +  92390  92395    6                               1.05

 3.11 PlyA -  96858  96853    6                              -0.45
 3.10 Term - 100362  99998  365  1  2   56   46   429 0.411  30.23
 3.09 Intr - 100961 100793  169  2  1  125   70   130 0.993  14.42
 3.08 Intr - 103436 103308  129  2  0   91   72   199 0.933  19.49
 3.07 Intr - 104226 104053  174  0  0  113   42   192 0.995  17.24
 3.06 Intr - 105464 105147  318  2  0   54   80   339 0.974  25.85
 3.05 Intr - 105912 105861   52  2  1  125   71     9 0.525   1.81
 3.04 Intr - 106701 106407  295  1  1   54   52   244 0.955  13.47
 3.03 Intr - 107927 107791  137  1  2   37  105    78 0.542   4.61
 3.02 Intr - 108863 108749  115  0  1   49  119     9 0.705  -0.39
 3.01 Init - 109073 108893  181  2  1   34  -50   273 0.465   5.45
 3.00 Prom - 109271 109232   40                              -9.06

 4.00 Prom + 109906 109945   40                              -3.06
 4.01 Init + 115244 115283   40  1  1   64  111   108 0.965  11.05
 4.02 Intr + 121283 121407  125  0  2   96   63   103 0.645   8.90
 4.03 Intr + 121715 121881  167  1  2   76   81   212 0.345  18.06
 4.04 Intr + 128460 128576  117  0  0    7   82    95 0.203   0.38
 4.05 Intr + 129380 129482  103  2  1  107   47   149 0.994  12.88
 4.06 Term + 129912 130016  105  2  0   70   33   157 0.997   6.81
 4.07 PlyA + 130818 130823    6                              -0.45

 5.13 PlyA - 131231 131226    6                               1.05
 5.12 Term - 131955 131836  120  0  0  104   47    94 0.997   5.37
 5.11 Intr - 132314 132173  142  1  1  125  113   249 0.998  31.46
 5.10 Intr - 133022 132882  141  1  0   94  117   159 0.993  18.87
 5.09 Intr - 145355 145290   66  1  0  103  110     2 0.000   1.92
 5.08 Intr - 151532 151411  122  2  2   78   81    53 0.004   2.89
 5.07 Intr - 159450 159342  109  2  1   46   88    72 0.018   3.29
 5.06 Intr - 163450 163281  170  1  2   54   52    79 0.009  -0.36
 5.05 Intr - 165569 165430  140  0  2    2   65   135 0.115   2.78
 5.04 Intr - 176210 176145   66  0  0   87   89    32 0.024   2.08
 5.03 Intr - 188638 188431  208  1  1  101  110     7 0.326   2.85
 5.02 Intr - 193592 193460  133  1  1   93  100   131 0.960  15.45
 5.01 Intr - 194218 194033  186  0  0   88  110   102 0.838  11.20

Suboptimal exons with probability > 0.800

Exnum Type S .Begin ...End .Len Fr Ph B/Ac Do/T CodRg P.... Tscr..
----- ---- - ------ ------ ---- -- -- ---- ---- ----- ----- ------

S.001 Term + 149444 149538   95  0  2   66   42   123 0.882   3.49


Predicted peptide sequence(s):

Predicted coding sequence(s):


>gi568815588r:101479456_101687360|GENSCAN_predicted_peptide_1|523_aa
FYTTQKFEEEREYIKMYSAPVFRHYIVLAMCYLFGFSCEPGVGVTLRVTSDLKRDTKGAS
ESRDDLFLDLGVGYTKLANGTSSMIVPKQRKLSASYEKEKELCVKYFEQWSESDQVEFVE
HLISQMCHYQHGHINSYLKPMLQRDFITALPARGLDHIAENILSYLDAKSLCAAELVCKE
WYRVTSDGMLWKKLIERMTIESNWRCGRHSLQRIHCRSETSKGVYCLQYDDQKIVSGLRD
NTIKIWDKNTLECKRILTGHTGSVLCLQYDERVIITGSSDSTVRVWDVNTGEMLNTLIHH
CEAVLHLRFNNGMMVTCSKDRSIAVWDMASPTDITLRRVLVGHRAAVNVVDFDDKYIVSA
SGDRTIKVWNTSTCEFVRTLNGHKRGIACLQYRDRLVVSGSSDNTIRLWDIECGACLRVL
EGHEELVRCIRFDNKRIVSGAYDGKIKVWDLVAALDPRAPAGTLCLRTLVEHSGRVFRLQ
FDEFQIVSSSHDDTILIWDFLNDPAAQAEPPRSPSRTYTYISR

>gi568815588r:101479456_101687360|GENSCAN_predicted_CDS_1|1572_bp
ttttatactactcagaagtttgaggaggagagagaatacattaaaatgtattcagcccca
gtgttcaggcactatatagtgctagctatgtgttacttatttggattctcatgtgaacct
ggtgtaggagtcactctcagggtgactagtgacctgaaaagggacacaaagggggctagt
gagtctcgtgatgatctgtttcttgatctgggtgttggttatacaaaacttgccaatggc
acttccagtatgattgtgcccaagcaacggaaactctcagcaagctatgaaaaggaaaag
gaactgtgtgtcaaatactttgagcagtggtcagagtcagatcaagtggaatttgtggaa
catcttatatcccaaatgtgtcattaccaacatgggcacataaactcgtatcttaaacct
atgttgcagagagatttcataactgctctgccagctcggggattggatcatattgctgag
aacattctgtcatacctggatgccaaatcactatgtgctgctgaacttgtgtgcaaggaa
tggtaccgagtgacctctgatggcatgctgtggaagaagcttatcgagagaatgacaata
gaatctaattggagatgtggaagacatagtttacagagaattcactgccgaagtgaaaca
agcaaaggagtttactgtttacagtatgatgatcagaaaatagtaagcggccttcgagac
aacacaatcaagatctgggataaaaacacattggaatgcaagcgaattctcacaggccat
acaggttcagtcctctgtctccagtatgatgagagagtgatcataacaggatcatcggat
tccacggtcagagtgtgggatgtaaatacaggtgaaatgctaaacacgttgattcaccat
tgtgaagcagttctgcacttgcgtttcaataatggcatgatggtgacctgctccaaagat
cgttccattgctgtatgggatatggcctccccaactgacattaccctccggagggtgctg
gtcggacaccgagctgctgtcaatgttgtagactttgatgacaagtacattgtttctgca
tctggggatagaactataaaggtatggaacacaagtacttgtgaatttgtaaggacctta
aatggacacaaacgaggcattgcctgtttgcagtacagggacaggctggtagtgagtggc
tcatctgacaacactatcagattatgggacatagaatgtggtgcatgtttacgagtgtta
gaaggccatgaggaattggtgcgttgtattcgatttgataacaagaggatagtcagtggg
gcctatgatggaaaaattaaagtgtgggatcttgtggctgctttggacccccgtgctcct
gcagggacactctgtctacggacccttgtggagcattccggaagagtttttcgactacag
tttgatgaattccagattgtcagtagttcacatgatgacacaatcctcatctgggacttc
ctaaatgatccagctgcccaagctgaacccccccgttccccttctcgaacatacacctac
atctccagataa

>gi568815588r:101479456_101687360|GENSCAN_predicted_peptide_2|104_aa
MCMCARLCSCTPPLPLSAALMTLAQRKVMTNARYQRTRPMTNGRAPEQPHYAVITEDGWP
GAPPPPPRAGNGSRSCSARPGREPSRCRRAANHVGAQDAQTEEP

>gi568815588r:101479456_101687360|GENSCAN_predicted_CDS_2|315_bp
atgtgcatgtgtgcgcgcctgtgctcatgcacgccccccctcccgctgtcagccgcgctg
atgacattggcgcagaggaaagtgatgacaaatgcccgttatcagcgaacgaggccgatg
acaaatgggcgggcgcccgagcagccccattacgctgtaataacagaagatggatggcct
ggagcccccccacccccaccccgtgccggtaacgggagccgatcctgctccgcccgcccc
gggagggagcccagccgctgccgccgggccgccaatcacgtcggggcccaagacgcccag
accgaggagccgtga

>gi568815588r:101479456_101687360|GENSCAN_predicted_peptide_3|644_aa
MQDLARLTAETLPALPTQALRPFPEGRTLREKNEGARGDPRVTVLQQRSLLGCPQTLQPA
PRPAAAMATVPEGHFRLTRKLFWPFALLPPFVRSHWLCWPGSSHTSMDPRGILKAFPKRQ
KIHADASSKVLAKIPRREEGEEAEEWLSSLRAHVVRTGIGRARAELFEKQIVQHGGQLCP
AQGPGVTHIVVDEGMDYERALRLLRLPQLPPGAQLVKSAWLSLCLQERRLVDVAGFSIFI
PSRPVSPPQKAKEAPNTQAQPISDDEASDGEETQVSAADLEALISGHYPTSLEGDCEPSP
APAVLDKWVCAQPSSQKATNHNLHITEKLEVLAKAYSVQGDKWRALGYAKAINALKSFHK
PVTSYQEACSIPGIGKRMAEKIIEILESGHLRKLDHISESVPVLELFSNIWGAGTKTAQM
WYQQGFRSLEDIRSQASLTTQQAIGLKHYSDFLERMPREEATEIEQTVQKAAQAFNSGLL
CVACGSYRRGKATCGDVDVLITHPDGRSHRGIFSRLLDSLRQEGFLTDDLVSQEENGQQQ
KYLGVCRLPGPGRRHRRLDIIVVPYSEFACALLYFTGSAHFNRSMRALAKTKGMSLSEHA
LSTAVVRNTHGCKVGPGRVLPTPTEKDVFRLLGLPYREPAERDW

>gi568815588r:101479456_101687360|GENSCAN_predicted_CDS_3|1935_bp
atgcaggacctggcccggctgaccgccgagacccttccagctctgccgacccaggccctg
aggcccttcccggagggccggaccctgagggaaaaaaacgaaggagcccgtggggaccct
cgagttaccgtcctgcagcagcgcagtcttctgggctgtccgcagactctccaaccagcc
ccacgcccagccgctgccatggcaaccgttccagagggtcacttccggctgactcggaag
ctattctggccatttgccctccttccccccttcgtccgctctcattggctctgctggccg
ggatccagccatacttcaatggatcccaggggtatcttgaaggcatttcccaagcggcag
aaaattcatgctgatgcatcatcaaaagtacttgcaaagattcctaggagggaagaggga
gaagaagcagaagagtggctgagctcccttcgggcccatgttgtgcgcactggcattgga
cgagcccgggcagaactctttgagaagcagattgttcagcatggcggccagctatgccct
gcccagggcccaggtgtcactcacattgtggtggatgaaggcatggactatgagcgagcc
ctccgccttctcagactaccccagctgcccccgggtgctcagctggtgaagtcagcctgg
ctgagcttgtgccttcaggagaggaggctggtggatgtagctggattcagcatcttcatc
cccagtaggcctgtgtctcctccccaaaaggcaaaagaggcaccaaacacccaagcccag
cccatctctgatgatgaagccagtgatggggaagaaacccaggttagtgcagctgatctg
gaagccctcatcagtggccactaccccacctcccttgagggagattgtgagcctagccca
gcccctgctgtcctggataagtgggtctgtgcacagccctcaagccagaaggcgaccaat
cacaacctccatatcacagagaagctggaagttctggccaaagcctacagtgttcaggga
gacaagtggagggccctgggctatgccaaggccatcaatgccctcaagagcttccataag
cctgtcacctcgtaccaggaggcctgcagtatccctgggattgggaagcggatggctgag
aaaatcatagagatcctggagagcgggcatttgcggaagctggaccatatcagtgagagc
gtgcctgtcttggagctcttctccaacatctggggagctgggaccaagactgcccagatg
tggtaccaacagggcttccgaagtctggaagacatccgcagccaggcctccctgacaacc
cagcaggccatcggcctgaagcattacagtgacttcctggaacgtatgcccagggaggag
gctacagagattgagcagacagtccagaaagcagcccaggcctttaactctgggctgctg
tgtgtggcatgtggttcataccgacggggaaaggcgacctgtggtgatgtcgacgtgctc
atcactcacccagatggccggtcccaccggggtatcttcagccgcctccttgacagtctt
cggcaggaagggttcctcacagatgacttggtgagccaagaggagaatggtcagcaacag
aagtacttgggggtgtgccggctcccagggccagggcggcggcaccggcgcctggacatc
atcgtggtgccctatagcgagtttgcctgtgccctgctctacttcaccggctctgcacac
ttcaaccgctccatgcgagccctggccaaaaccaagggcatgagtctgtcagaacatgcc
ctcagcactgctgtggtccggaacacccatggctgcaaggtggggcctggccgagtgctg
cccactcccactgagaaggatgtcttcaggctcttaggcctcccctaccgagaacctgct
gagcgggactggtga

>gi568815588r:101479456_101687360|GENSCAN_predicted_peptide_4|218_aa
MAEEYDEKTSELLVRKWRVKSALGAMGQWQLEVGDPAPLGAGNLGPELIKESNANEQSSS
WICLLQPIFMRKDTKMSFQWRIRNLPYPKDVYSVSVDQKERCIIVRTTNKNKDQTKDKES
YSNLDSHPYRQLAVKQGKIFHLSEPEFPFRYYKKFSIPDLDRHQLPLDDALLSFAHANCT
LIISYQKPKEVVVAESELQKELKKVKTAHSNDGDCKTQ

>gi568815588r:101479456_101687360|GENSCAN_predicted_CDS_4|657_bp
atggctgaagaatatgacgagaagacgagtgaactacttgtgagaaagtggcgtgtgaaa
agtgccctgggagccatgggccagtggcagcttgaagtaggagacccagcgcccctagga
gcagggaacctggggcctgaactcatcaaggaaagcaatgccaatgaacagtcctcgagt
tggatttgccttctgcagcctatcttcatgcgcaaggacaccaagatgagtttccagtgg
cggattcgaaacctcccctatcctaaggatgtctatagtgtctctgtggaccagaaggag
cgctgcatcattgtcagaacaaccaacaagaataaggatcagaccaaggacaaggaatct
tactctaatcttgactcccatccctaccgacaactggccgtgaaacaaggcaagatattt
catctctctgagcccgagttcccttttaggtactacaagaagttctccattcctgatcta
gatagacaccagctacctctggatgacgccttgctgagctttgcccacgccaactgcacc
ctgatcatctcttaccagaagccaaaggaggttgtggtggccgagtctgagctacagaag
gaactaaagaaggtgaagacagcccacagcaacgatggggactgcaagacccagtag

>gi568815588r:101479456_101687360|GENSCAN_predicted_peptide_5|534_aa
XQMPWMQLEDDSLYISQANFILAYQFRPDGASLNRRPLGVFAGHDEDVCHFVLANSHIVS
AGGDGKIGIHKIHSTFTVKYSAHEQEVNCVDCKGGIIVSGSRDRTAKGIKDSPFLHLQQS
PLPEHLSSPLIPGNANESISSPVSRCGLWPQAGWGSAYTPSRLKTESGPLLSAHYSAAAL
AVLEKPGSFLLCLNEKRTNLNAEQTGKKCDLTTTYKPCAKLLLQPMAMIAPEYSSPRLSE
TPLYVITGSVGITPSPALNLGTLKEGLVALMVGMALIQALPWPQCSPVAHDVFGLYSNVP
KRVVMKQKFGGKHCQSCRKTGILIGSCSQAFTTQKAIEMPLWMVGSTSMALSTHHRCDSS
SFWSCALEGIQVDVSPPASSFVTGTACCGHFSPLRIWDLNSGQLMTHLGSDFPPGAGVLD
VMYESPFTLLSCGYDTYVRYWDLRTSVRKCVMEWEEPHDSTLYCLQTDGNHLLATGSSYY
GVVRLWDRRQRACLHAFPLTSTPLSSPVYCLRLTTKHLYAALSYNLHVLDFQNP

>gi568815588r:101479456_101687360|GENSCAN_predicted_CDS_5|1605_bp
nntcagatgccctggatgcagctagaggatgattctctgtacatatcccaggctaatttc
atcctggcctaccagttccgtccagatggtgccagcttgaatcgtcggcctctgggagtc
tttgctgggcatgatgaggacgtttgccactttgtgctggccaactcgcatattgttagt
gcaggaggggatgggaagattggcattcataagattcacagcaccttcactgtcaagtac
tcggctcatgaacaggaggtgaactgtgtggattgcaaagggggcatcattgtgagtggc
tccagggacaggacggccaagggcataaaggattccccatttctccacctccaacagtca
cctctcccggagcacctctcctccccactgatcccaggcaatgccaacgagagcatctcc
tctcctgtttctaggtgtggcctttggcctcaggccggctggggcagtgcttacacacca
tccagactgaagaccgagtctggtccattgctatcagcccattactcagctgcagcttta
gctgtcctagagaaacctgggtctttcctcctgtgcctgaatgagaagagaacaaatctc
aatgccgagcaaacaggcaaaaagtgtgacctgaccaccacctacaaaccatgtgccaaa
ctgctcctacagcccatggccatgattgcccctgaatatagctcacctaggctgtcagag
actcctctgtatgtgatcacaggtagtgtaggcatcacgcccagccctgccctaaatctt
ggcactttaaaggagggcctggtggcgctgatggtgggcatggcattgattcaggcactg
ccctggccccagtgctcccctgtggctcatgatgtgtttggcctttattccaatgttcca
aagagagtggttatgaagcagaagtttgggggaaagcactgtcagagctgccggaaaact
ggaattctcataggcagctgttcccaggctttcaccactcagaaagccatcgagatgcca
ctgtggatggtaggttccacaagcatggccctgtccactcatcacagatgtgactcgagc
agcttctggagctgcgctctagagggcattcaggtggatgtttccccacctgcaagctct
tttgtgacagggacggcttgttgcgggcacttctcacccctgagaatctgggacctcaac
agtgggcagctgatgacacacttgggcagtgactttcccccaggggctggggtgctggat
gtcatgtatgagtcccctttcacactgctgtcctgtggctatgacacctatgttcgctac
tgggacctccgcaccagcgtccggaaatgtgtcatggagtgggaggagccccacgacagc
accctgtactgcctgcagacagatggcaaccacctgctggccacaggttcctcctactac
ggtgttgtacggctgtgggaccggcgtcaaagggcctgcctgcacgccttcccgctgacg
tcgactcccctcagcagccctgtgtactgcctgcgtctcaccaccaagcatctctatgct
gccctgtcttacaacctccacgtcctggattttcaaaacccatga