Result of FASTA (ccds) for pF1KA1462
FASTA searches a protein or DNA sequence data bank 36.3.4 Apr, 2011
Please cite:
W.R. Pearson & D.J. Lipman PNAS (1988) 85:2444-2448

Query: pF1KA1462, 1359 aa
  1>>>pF1KA1462 1359 - 1359 aa - 1359 aa
Library: human.CCDS.faa
  18511270 residues in 32554 sequences

Statistics:  Expectation_n fit: rho(ln(x))= 10.6377+/-0.00102; mu= -0.4158+/- 0.061
 mean_var=279.8045+/-58.502, 0's: 0 Z-trim(113.9): 16  B-trim: 551 in 2/51
 Lambda= 0.076674
 statistics sampled from 14530 (14542) to 14530 sequences
Algorithm: FASTA (3.7 Nov 2010) [optimized]
Parameters: BL50 matrix (15:-5), open/ext: -10/-2
 ktup: 2, E-join: 1 (0.75), E-opt: 0.2 (0.447), width:  16
 Scan time:  6.830

The best scores are:                                      opt bits E(32554)
CCDS41500.1 KIAA1462 gene_id:57608|Hs108|chr10     (1359) 9377 1051.6       0


>>CCDS41500.1 KIAA1462 gene_id:57608|Hs108|chr10          (1359 aa)
 initn: 9377 init1: 9377 opt: 9377  Z-score: 5616.4  bits: 1051.6 E(32554):    0
Smith-Waterman score: 9377; 99.9% identity (99.9% similar) in 1359 aa overlap (1-1359:1-1359)

               10        20        30        40        50        60
pF1KA1 MYSVEDLLISHGYKLSRDPPASREDNPKGRQAARTGTRAGQGLQNGHEDGPAALAHRKTS
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS41 MYSVEDLLISHGYKLSRDPPASREDNPKGRQAARTGTRAGQGLQNGHEDGPAALAHRKTS
               10        20        30        40        50        60

               70        80        90       100       110       120
pF1KA1 AGKGHVSDSESRRSTPRGHGEPQSTSASRTSEAGFCNQPPSAWSSHPPTGNDQAYRRRGR
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS41 AGKGHVSDSESRRSTPRGHGEPQSTSASRTSEAGFCNQPPSAWSSHPPTGNDQAYRRRGR
               70        80        90       100       110       120

              130       140       150       160       170       180
pF1KA1 QEARSQKPREHENLEARGMAQAHSLPVHVREGPWEVGGRSEHVMKKPVWEEELRMSGPAK
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS41 QEARSQKPREHENLEARGMAQAHSLPVHVREGPWEVGGRSEHVMKKPVWEEELRMSGPAK
              130       140       150       160       170       180

              190       200       210       220       230       240
pF1KA1 WQNVSLESWNQPRKLGRQMSDGDGERLFQDLYPFIQGEHVLNSQNKGKSRSLPRVLSPES
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS41 WQNVSLESWNQPRKLGRQMSDGDGERLFQDLYPFIQGEHVLNSQNKGKSRSLPRVLSPES
              190       200       210       220       230       240

              250       260       270       280       290       300
pF1KA1 LSCTEIPIPLNERHSPKMPPYPPTCAPNLDSTRNSEKSGCSAPFPRPKFGRPLKPPSYSS
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS41 LSCTEIPIPLNERHSPKMPPYPPTCAPNLDSTRNSEKSGCSAPFPRPKFGRPLKPPSYSS
              250       260       270       280       290       300

              310       320       330       340       350       360
pF1KA1 HQQSRGGADSSDSQDSQQMDAYVPRHELCLSDPGLEPPVYVPPPSYRSPPQNIPNPYLED
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS41 HQQSRGGADSSDSQDSQQMDAYVPRHELCLSDPGLEPPVYVPPPSYRSPPQNIPNPYLED
              310       320       330       340       350       360

              370       380       390       400       410       420
pF1KA1 TVPINVCGGHSQQQSPTEKAGASGQPPSGPPGTGNEYGVSPRLPQGLPAHPRPVTAYDGF
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS41 TVPINVCGGHSQQQSPTEKAGASGQPPSGPPGTGNEYGVSPRLPQGLPAHPRPVTAYDGF
              370       380       390       400       410       420

              430       440       450       460       470       480
pF1KA1 VQYIPFDDPRLRHFKLAQPQGFCEDIKLDDKSYNSSPVTAQEPAHGGMQPDGAIWNPQSL
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS41 VQYIPFDDPRLRHFKLAQPQGFCEDIKLDDKSYNSSPVTAQEPAHGGMQPDGAIWNPQSL
              430       440       450       460       470       480

              490       500       510       520       530       540
pF1KA1 IPPSGDERGLVLADSSPRWLWGQPPGDGENSGLPNQRDRCVARGQWPDVRGSQHGHTGRQ
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS41 IPPSGDERGLVLADSSPRWLWGQPPGDGENSGLPNQRDRCVARGQWPDVRGSQHGHTGRQ
              490       500       510       520       530       540

              550       560       570       580       590       600
pF1KA1 VSSPYSQGESTCETQTKLKKFQTGTRTKKSSKKKMNETIFCLVSIPVKSESHLPDRDMDN
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS41 VSSPYSQGESTCETQTKLKKFQTGTRTKKSSKKKMNETIFCLVSIPVKSESHLPDRDMDN
              550       560       570       580       590       600

              610       620       630       640       650       660
pF1KA1 NDLKPSADQKNGSDKSPALQEQSLLSMSSTDLELQALTGSMGGRTEFQKQDLGEPEEDRQ
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS41 NDLKPSADQKNGSDKSPALQEQSLLSMSSTDLELQALTGSMGGRTEFQKQDLGEPEEDRQ
              610       620       630       640       650       660

              670       680       690       700       710       720
pF1KA1 TNDLSFIHLTKHRELKHSGSWPGHRYRDQQTQTSFSEEPQSSQLLPGAKLGGPSRAALSP
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS41 TNDLSFIHLTKHRELKHSGSWPGHRYRDQQTQTSFSEEPQSSQLLPGAKLGGPSRAALSP
              670       680       690       700       710       720

              730       740       750       760       770       780
pF1KA1 KCSDPAASEAQTHTAFPTGDHKQRPSARNLKGHRSLSPSSNSAFSRTSLSVDQAPTPKAG
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS41 KCSDPAASEAQTHTAFPTGDHKQRPSARNLKGHRSLSPSSNSAFSRTSLSVDQAPTPKAG
              730       740       750       760       770       780

              790       800       810       820       830       840
pF1KA1 RSQPCVDVHGLGAHPGPKREVVKGEPTGPCNSKQLFGQFLLKPVSRRPWDLISQLESFNK
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS41 RSQPCVDVHGLGAHPGPKREVVKGEPTGPCNSKQLFGQFLLKPVSRRPWDLISQLESFNK
              790       800       810       820       830       840

              850       860       870       880       890       900
pF1KA1 ELQEEEESSSSSSSSSSSSEESEAEPQQENRAHCRQEDVGFRGNSPEMRVEPQPRMWVPE
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS41 ELQEEEESSSSSSSSSSSSEESEAEPQQENRAHCRQEDVGFRGNSPEMRVEPQPRMWVPE
              850       860       870       880       890       900

              910       920       930       940       950       960
pF1KA1 SPVCRSGRGESKSESWSEELQPGHPRAWPPSPGRFRVEEGGGAPFCSADGSTSAEKGHLE
       :::::::::::::::::::::::::::::::::::::::::::::::::::::::: :::
CCDS41 SPVCRSGRGESKSESWSEELQPGHPRAWPPSPGRFRVEEGGGAPFCSADGSTSAEKRHLE
              910       920       930       940       950       960

              970       980       990      1000      1010      1020
pF1KA1 VSNGMDELAGSPFPVTRMSSRSSDAKPLPASYPAEPREPQESPKITSAFSSVKPSEAVPR
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS41 VSNGMDELAGSPFPVTRMSSRSSDAKPLPASYPAEPREPQESPKITSAFSSVKPSEAVPR
              970       980       990      1000      1010      1020

             1030      1040      1050      1060      1070      1080
pF1KA1 KFDSGGERGAGLPLSLSNKNRGLSAPDLRSVGLTPGQEQGASELEGSLGEASTIEIPPGE
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS41 KFDSGGERGAGLPLSLSNKNRGLSAPDLRSVGLTPGQEQGASELEGSLGEASTIEIPPGE
             1030      1040      1050      1060      1070      1080

             1090      1100      1110      1120      1130      1140
pF1KA1 SLQARAARILGIEVAVESLLPGIRRAGQNQPAEPDASACTPESPQEELLSRPAPADVPRV
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS41 SLQARAARILGIEVAVESLLPGIRRAGQNQPAEPDASACTPESPQEELLSRPAPADVPRV
             1090      1100      1110      1120      1130      1140

             1150      1160      1170      1180      1190      1200
pF1KA1 STDAFYGRRKCGWTKSPLFVGDRDSARRAPQAFEHSDVDGVVTSTDPVPEPEPSPLESKF
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS41 STDAFYGRRKCGWTKSPLFVGDRDSARRAPQAFEHSDVDGVVTSTDPVPEPEPSPLESKF
             1150      1160      1170      1180      1190      1200

             1210      1220      1230      1240      1250      1260
pF1KA1 FEQKDVETKPPFRSTLFHFVERTPSVAGSEKRLRSPSKVIESLQEKLASPPRRADPDRLM
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS41 FEQKDVETKPPFRSTLFHFVERTPSVAGSEKRLRSPSKVIESLQEKLASPPRRADPDRLM
             1210      1220      1230      1240      1250      1260

             1270      1280      1290      1300      1310      1320
pF1KA1 RMKEVSSVSRMRVLSFRNADSQEDAEELKATTRGQAGLPGGLVSPGSGDRAQRLGHSLSV
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS41 RMKEVSSVSRMRVLSFRNADSQEDAEELKATTRGQAGLPGGLVSPGSGDRAQRLGHSLSV
             1270      1280      1290      1300      1310      1320

             1330      1340      1350         
pF1KA1 SKDSISREEKEHPAAQKEKSMDQDFWCPDSYDPSRVERV
       :::::::::::::::::::::::::::::::::::::::
CCDS41 SKDSISREEKEHPAAQKEKSMDQDFWCPDSYDPSRVERV
             1330      1340      1350         




1359 residues in 1 query   sequences
18511270 residues in 32554 library sequences
 Tcomplib [36.3.4 Apr, 2011] (8 proc)
 start: Thu Nov  3 11:08:20 2016 done: Thu Nov  3 11:08:21 2016
 Total Scan time:  6.830 Total Display time:  0.080

Function used was FASTA [36.3.4 Apr, 2011]
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