Result of FASTA (ccds) for pF1KA0197
FASTA searches a protein or DNA sequence data bank 36.3.4 Apr, 2011
Please cite:
W.R. Pearson & D.J. Lipman PNAS (1988) 85:2444-2448

Query: pF1KA0197, 1315 aa
  1>>>pF1KA0197 1315 - 1315 aa - 1315 aa
Library: human.CCDS.faa
  18511270 residues in 32554 sequences

Statistics:  Expectation_n fit: rho(ln(x))= 5.7817+/-0.00124; mu= 19.6104+/- 0.074
 mean_var=65.5453+/-12.832, 0's: 0 Z-trim(100.5): 27  B-trim: 0 in 0/48
 Lambda= 0.158418
 statistics sampled from 6147 (6152) to 6147 sequences
Algorithm: FASTA (3.7 Nov 2010) [optimized]
Parameters: BL50 matrix (15:-5), open/ext: -10/-2
 ktup: 2, E-join: 1 (0.534), E-opt: 0.2 (0.189), width:  16
 Scan time:  5.220

The best scores are:                                      opt bits E(32554)
CCDS31484.1 NUP160 gene_id:23279|Hs108|chr11       (1436) 8637 1984.0       0
CCDS81567.1 NUP160 gene_id:23279|Hs108|chr11       ( 224)  900 215.5 1.3e-55


>>CCDS31484.1 NUP160 gene_id:23279|Hs108|chr11            (1436 aa)
 initn: 8715 init1: 8630 opt: 8637  Z-score: 10655.1  bits: 1984.0 E(32554):    0
Smith-Waterman score: 8637; 99.0% identity (99.2% similar) in 1310 aa overlap (2-1311:37-1341)

                                            10        20        30 
pF1KA0                              MAAGALERSFVELSGAERERPRHFREFTVCS
                                     ::::::::::::::::::::::::::::::
CCDS31 APPAPPPEVTATARPCLCSVGRRGDGGKMAAAGALERSFVELSGAERERPRHFREFTVCS
         10        20        30        40        50        60      

              40        50        60        70        80        90 
pF1KA0 IGTANAVAGAVKYSESAGGFYYVESGKLFSVTRNRFIHWKTSGDTLELMEESLDINLLNN
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS31 IGTANAVAGAVKYSESAGGFYYVESGKLFSVTRNRFIHWKTSGDTLELMEESLDINLLNN
         70        80        90       100       110       120      

             100       110       120       130       140       150 
pF1KA0 AIRLKFQNCSVLPGGVYVSETQNRVIILMLTNQTVHRLLLPHPSRMYRSELVVDSQMQSI
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS31 AIRLKFQNCSVLPGGVYVSETQNRVIILMLTNQTVHRLLLPHPSRMYRSELVVDSQMQSI
        130       140       150       160       170       180      

             160       170       180       190       200       210 
pF1KA0 FTDIGKVDFTDPCNYQLIPAVPGISPNSTASTAWLSSDGEALFALPCASGGIFVLKLPPY
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS31 FTDIGKVDFTDPCNYQLIPAVPGISPNSTASTAWLSSDGEALFALPCASGGIFVLKLPPY
        190       200       210       220       230       240      

             220       230       240       250       260       270 
pF1KA0 DIPGMVSVVELKQSSVMQRLLTGWMPTAIRGDQSPSDRPLSLAVHCVEHDAFIFALCQDH
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS31 DIPGMVSVVELKQSSVMQRLLTGWMPTAIRGDQSPSDRPLSLAVHCVEHDAFIFALCQDH
        250       260       270       280       290       300      

             280       290       300       310       320       330 
pF1KA0 KLRMWSYKEQMCLMVADMLEYVPVKKDLRLTAGTGHKLRLAYSPTMGLYLGIYMHAPKRG
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS31 KLRMWSYKEQMCLMVADMLEYVPVKKDLRLTAGTGHKLRLAYSPTMGLYLGIYMHAPKRG
        310       320       330       340       350       360      

             340       350       360       370       380       390 
pF1KA0 QFCIFQLVSTESNRYSLDHISSLFTSQETLIDFALTSTDIWALWHDAENQTVVKYINFEH
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS31 QFCIFQLVSTESNRYSLDHISSLFTSQETLIDFALTSTDIWALWHDAENQTVVKYINFEH
        370       380       390       400       410       420      

             400       410       420       430       440       450 
pF1KA0 NVAGQWNPVFMQPLPEEEIVIRDDQDPREMYLQSLFTPGQFTNEALCKALQIFCRGTERN
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS31 NVAGQWNPVFMQPLPEEEIVIRDDQDPREMYLQSLFTPGQFTNEALCKALQIFCRGTERN
        430       440       450       460       470       480      

             460       470       480       490       500       510 
pF1KA0 LDLSWSELKKEVTLAVENELQGSVTEYEFSQEEFRNLQQEFWCKFYACCLQYQEALSHPL
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS31 LDLSWSELKKEVTLAVENELQGSVTEYEFSQEEFRNLQQEFWCKFYACCLQYQEALSHPL
        490       500       510       520       530       540      

             520       530       540       550       560       570 
pF1KA0 ALHLNPHTNMVCLLKKGYLSFLIPSSLVDHLYLLPYENLLTEDETTISDDVDIARDVICL
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS31 ALHLNPHTNMVCLLKKGYLSFLIPSSLVDHLYLLPYENLLTEDETTISDDVDIARDVICL
        550       560       570       580       590       600      

             580       590       600       610       620       630 
pF1KA0 IKCLRLIEESVTVDMSVIMEMSCYNLQSPEKAAEQILEDMITIDVENVMEDICSKLQEIR
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS31 IKCLRLIEESVTVDMSVIMEMSCYNLQSPEKAAEQILEDMITIDVENVMEDICSKLQEIR
        610       620       630       640       650       660      

             640       650       660       670       680       690 
pF1KA0 NPIHAIGLLIREMDYETEVEMEKGFNPAQPLNIRMNLTQLYGSNTAGYIVCRGVHKIAST
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS31 NPIHAIGLLIREMDYETEVEMEKGFNPAQPLNIRMNLTQLYGSNTAGYIVCRGVHKIAST
        670       680       690       700       710       720      

             700       710       720       730       740       750 
pF1KA0 RFLICRDLLILQQLLMRLGDAVIWGTGQLFQAQQDLLHRTAPLLLSYYLIKWGSECLATD
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS31 RFLICRDLLILQQLLMRLGDAVIWGTGQLFQAQQDLLHRTAPLLLSYYLIKWGSECLATD
        730       740       750       760       770       780      

             760       770       780       790       800       810 
pF1KA0 VPLDTLESNLQHLSVLELTDSGALMANRFVSSPQTIVELFFQEVARKHIISHLFSQPKAP
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS31 VPLDTLESNLQHLSVLELTDSGALMANRFVSSPQTIVELFFQEVARKHIISHLFSQPKAP
        790       800       810       820       830       840      

             820       830       840       850       860       870 
pF1KA0 LSQTGLNWPEMITAITSYLLQLLWPSNPGCLFLECLMGNCQYVQLQDYIQLLHPWCQVNV
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS31 LSQTGLNWPEMITAITSYLLQLLWPSNPGCLFLECLMGNCQYVQLQDYIQLLHPWCQVNV
        850       860       870       880       890       900      

             880       890       900       910       920       930 
pF1KA0 GSCRFMLGRCYLVTGEGQKALECFCQAASEVGKEEFLDRLIRSEDGEIVSTPRLQYYDKV
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS31 GSCRFMLGRCYLVTGEGQKALECFCQAASEVGKEEFLDRLIRSEDGEIVSTPRLQYYDKV
        910       920       930       940       950       960      

             940       950       960       970       980       990 
pF1KA0 LRLLDVIGLPELVIQLATSAITEASDDWKSQATLRTCIFKHHLDLGHNSQAYEALTQIPD
       ::::::::::::::::::::::::.:::::::::::::::::::::::::::::::::::
CCDS31 LRLLDVIGLPELVIQLATSAITEAGDDWKSQATLRTCIFKHHLDLGHNSQAYEALTQIPD
        970       980       990      1000      1010      1020      

            1000      1010      1020      1030      1040      1050 
pF1KA0 SSRQLDCLRQLVVVLCERSQLQDLVEFPYVNLHNEVVGIIESRARAVDLMTHNYYELLYA
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS31 SSRQLDCLRQLVVVLCERSQLQDLVEFPYVNLHNEVVGIIESRARAVDLMTHNYYELLYA
       1030      1040      1050      1060      1070      1080      

            1060      1070      1080      1090      1100      1110 
pF1KA0 FHIYRHNYRKAGTVMFEYGMRLGREVRTLRGLEKQGNCYLAALNCLRLIRPEYAWIVQPV
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS31 FHIYRHNYRKAGTVMFEYGMRLGREVRTLRGLEKQGNCYLAALNCLRLIRPEYAWIVQPV
       1090      1100      1110      1120      1130      1140      

            1120      1130      1140      1150      1160      1170 
pF1KA0 SGAVYDRPGASPKRNHDGECTAAPTNRQIEILELEDLEKECSLARIRLTLAQHDPSAVAV
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS31 SGAVYDRPGASPKRNHDGECTAAPTNRQIEILELEDLEKECSLARIRLTLAQHDPSAVAV
       1150      1160      1170      1180      1190      1200      

            1180      1190      1200      1210      1220      1230 
pF1KA0 AGSSSAEEMVTLLVQAGLFDTAISLCQTFKLPLTPVFEGLAFKCIKLQFGGEAAQAEAWA
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS31 AGSSSAEEMVTLLVQAGLFDTAISLCQTFKLPLTPVFEGLAFKCIKLQFGGEAAQAEAWA
       1210      1220      1230      1240      1250      1260      

            1240      1250      1260      1270      1280      1290 
pF1KA0 WLAANQLSSVITTKESSATDEAWRLLSTYLERYKVQNNLYHHCVINKLLSHGVPLPNWLI
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS31 WLAANQLSSVITTKESSATDEAWRLLSTYLERYKVQNNLYHHCVINKLLSHGVPLPNWLI
       1270      1280      1290      1300      1310      1320      

            1300      1310                                         
pF1KA0 NSHNIALSQKVDKATRDLLYRRTL                                    
       ::.     .::: :    ::                                        
CCDS31 NSY-----KKVDAAELLRLYLNYDLLEEAVDLVSEYVDAVLGKGHQYFGIEFPLSATAPM
            1330      1340      1350      1360      1370      1380 

>>CCDS81567.1 NUP160 gene_id:23279|Hs108|chr11            (224 aa)
 initn: 900 init1: 900 opt: 900  Z-score: 1111.8  bits: 215.5 E(32554): 1.3e-55
Smith-Waterman score: 900; 100.0% identity (100.0% similar) in 139 aa overlap (2-140:37-175)

                                            10        20        30 
pF1KA0                              MAAGALERSFVELSGAERERPRHFREFTVCS
                                     ::::::::::::::::::::::::::::::
CCDS81 APPAPPPEVTATARPCLCSVGRRGDGGKMAAAGALERSFVELSGAERERPRHFREFTVCS
         10        20        30        40        50        60      

              40        50        60        70        80        90 
pF1KA0 IGTANAVAGAVKYSESAGGFYYVESGKLFSVTRNRFIHWKTSGDTLELMEESLDINLLNN
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS81 IGTANAVAGAVKYSESAGGFYYVESGKLFSVTRNRFIHWKTSGDTLELMEESLDINLLNN
         70        80        90       100       110       120      

             100       110       120       130       140       150 
pF1KA0 AIRLKFQNCSVLPGGVYVSETQNRVIILMLTNQTVHRLLLPHPSRMYRSELVVDSQMQSI
       :::::::::::::::::::::::::::::::::::::::::::::::::           
CCDS81 AIRLKFQNCSVLPGGVYVSETQNRVIILMLTNQTVHRLLLPHPSRMYRSVSWLSAISFIS
        130       140       150       160       170       180      

             160       170       180       190       200       210 
pF1KA0 FTDIGKVDFTDPCNYQLIPAVPGISPNSTASTAWLSSDGEALFALPCASGGIFVLKLPPY
                                                                   
CCDS81 QITLGVTNVVLERCLLELKEIWILVIPHQAYFDSYRLK                      
        190       200       210       220                          




1315 residues in 1 query   sequences
18511270 residues in 32554 library sequences
 Tcomplib [36.3.4 Apr, 2011] (8 proc)
 start: Thu Nov  3 09:12:50 2016 done: Thu Nov  3 09:12:51 2016
 Total Scan time:  5.220 Total Display time:  0.070

Function used was FASTA [36.3.4 Apr, 2011]
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