FASTA searches a protein or DNA sequence data bank 36.3.4 Apr, 2011
Please cite:
W.R. Pearson & D.J. Lipman PNAS (1988) 85:2444-2448

Query: pF1KSDA1665, 204 aa
  1>>>pF1KSDA1665 204 - 204 aa - 204 aa
Library: human.CCDS.faa
  18511270 residues in 32554 sequences

Statistics:  Expectation_n fit: rho(ln(x))= 5.1812+/-0.000669; mu= 13.9547+/- 0.040
 mean_var=57.9666+/-11.626, 0's: 0 Z-trim(110.1): 10  B-trim: 447 in 1/49
 Lambda= 0.168456
 statistics sampled from 11325 (11330) to 11325 sequences
Algorithm: FASTA (3.7 Nov 2010) [optimized]
Parameters: BL50 matrix (15:-5), open/ext: -10/-2
 ktup: 2, E-join: 1 (0.743), E-opt: 0.2 (0.348), width:  16
 Scan time:  2.140

The best scores are:                                      opt bits E(32554)
CCDS14018.1 POLR3H gene_id:171568|Hs108|chr22      ( 204) 1390 345.4 1.4e-95
CCDS33651.1 POLR3H gene_id:171568|Hs108|chr22      ( 175)  715 181.4   3e-46


>>CCDS14018.1 POLR3H gene_id:171568|Hs108|chr22           (204 aa)
 initn: 1390 init1: 1390 opt: 1390  Z-score: 1829.4  bits: 345.4 E(32554): 1.4e-95
Smith-Waterman score: 1390; 100.0% identity (100.0% similar) in 204 aa overlap (1-204:1-204)

               10        20        30        40        50        60
pF1KSD MFVLVEMVDTVRIPPWQFERKLNDSIAEELNKKLANKVVYNVGLCICLFDITKLEDAYVF
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS14 MFVLVEMVDTVRIPPWQFERKLNDSIAEELNKKLANKVVYNVGLCICLFDITKLEDAYVF
               10        20        30        40        50        60

               70        80        90       100       110       120
pF1KSD PGDGASHTKVHFRCVVFHPFLDEILIGKIKGCSPEGVHVSLGFFDDILIPPESLQQPAKF
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS14 PGDGASHTKVHFRCVVFHPFLDEILIGKIKGCSPEGVHVSLGFFDDILIPPESLQQPAKF
               70        80        90       100       110       120

              130       140       150       160       170       180
pF1KSD DEAEQVWVWEYETEEGAHDLYMDTGEEIRFRVVDESFVDTSPTGPSSADATTSSEELPKK
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS14 DEAEQVWVWEYETEEGAHDLYMDTGEEIRFRVVDESFVDTSPTGPSSADATTSSEELPKK
              130       140       150       160       170       180

              190       200    
pF1KSD EAPYTLVGSISEPGLGLLSWWTSN
       ::::::::::::::::::::::::
CCDS14 EAPYTLVGSISEPGLGLLSWWTSN
              190       200    

>>CCDS33651.1 POLR3H gene_id:171568|Hs108|chr22           (175 aa)
 initn: 715 init1: 715 opt: 715  Z-score: 943.9  bits: 181.4 E(32554): 3e-46
Smith-Waterman score: 1109; 85.8% identity (85.8% similar) in 204 aa overlap (1-204:1-175)

               10        20        30        40        50        60
pF1KSD MFVLVEMVDTVRIPPWQFERKLNDSIAEELNKKLANKVVYNVGLCICLFDITKLEDAYVF
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS33 MFVLVEMVDTVRIPPWQFERKLNDSIAEELNKKLANKVVYNVGLCICLFDITKLEDAYVF
               10        20        30        40        50        60

               70        80        90       100       110       120
pF1KSD PGDGASHTKVHFRCVVFHPFLDEILIGKIKGCSPEGVHVSLGFFDDILIPPESLQQPAKF
       ::::::::::                             :::::::::::::::::::::
CCDS33 PGDGASHTKV-----------------------------SLGFFDDILIPPESLQQPAKF
               70                                     80        90 

              130       140       150       160       170       180
pF1KSD DEAEQVWVWEYETEEGAHDLYMDTGEEIRFRVVDESFVDTSPTGPSSADATTSSEELPKK
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS33 DEAEQVWVWEYETEEGAHDLYMDTGEEIRFRVVDESFVDTSPTGPSSADATTSSEELPKK
             100       110       120       130       140       150 

              190       200    
pF1KSD EAPYTLVGSISEPGLGLLSWWTSN
       ::::::::::::::::::::::::
CCDS33 EAPYTLVGSISEPGLGLLSWWTSN
             160       170     




204 residues in 1 query   sequences
18511270 residues in 32554 library sequences
 Tcomplib [36.3.4 Apr, 2011] (8 proc)
 start: Thu Nov  3 06:52:46 2016 done: Thu Nov  3 06:52:46 2016
 Total Scan time:  2.140 Total Display time: -0.010

Function used was FASTA [36.3.4 Apr, 2011]