(Linear) (Six-base) MAPSORT of: KIAA1410.seq Check: 5232 from: 1 to: 12795 KIAA1410.orf With 182 enzymes: SgfI * April 11, 2008 14:41 .. AarI CACCTGCnnnn'nnnn_ Cuts at: 0 516 1419 2366 4064 7605 12096 12795 Size: 516 903 947 1698 3541 4491 699 Fragments arranged by size: 4491 3541 1698 947 903 699 516 AatII G_ACGT'C Cuts at: 0 5641 11972 12795 Size: 5641 6331 823 Fragments arranged by size: 6331 5641 823 AccI GT'mk_AC Cuts at: 0 3508 8008 12795 Size: 3508 4500 4787 Fragments arranged by size: 4787 4500 3508 Acc65I G'GTAC_C Cuts at: 0 6570 12795 Size: 6570 6225 AcuI CTGAAGnnnnnnnnnnnnnn_nn' Cuts at: 0 446 754 913 1030 1049 2977 2991 3580 Size: 446 308 159 117 19 1928 14 589 Cuts at: 3580 3700 5110 6109 6764 7687 8269 9340 9940 Size: 120 1410 999 655 923 582 1071 600 Cuts at: 9940 9942 10180 10501 11401 12795 Size: 2 238 321 900 1394 Fragments arranged by size: 1928 1410 1394 1071 999 923 900 655 600 589 582 446 321 308 238 159 120 117 19 14 2 AfeI AGC'GCT Cuts at: 0 3796 4472 7483 9685 12795 Size: 3796 676 3011 2202 3110 Fragments arranged by size: 3796 3110 3011 2202 676 AflIII A'CryG_T Cuts at: 0 1119 4118 5834 12795 Size: 1119 2999 1716 6961 Fragments arranged by size: 6961 2999 1716 1119 AhdI GACnn_n'nnGTC Cuts at: 0 7554 9645 10695 12795 Size: 7554 2091 1050 2100 Fragments arranged by size: 7554 2100 2091 1050 AleI CACnn'nnGTG Cuts at: 0 1498 2479 4042 8920 12795 Size: 1498 981 1563 4878 3875 Fragments arranged by size: 4878 3875 1563 1498 981 AlfI GCAnnnnnnTGCnnnnnnnnnn_nn' Cuts at: 0 1732 5092 8968 11870 12407 12795 Size: 1732 3360 3876 2902 537 388 Fragments arranged by size: 3876 3360 2902 1732 537 388 AlwNI CAG_nnn'CTG Cuts at: 0 253 543 597 621 891 1230 2319 2448 Size: 253 290 54 24 270 339 1089 129 Cuts at: 2448 2744 2973 3091 3300 3483 3588 3777 6386 Size: 296 229 118 209 183 105 189 2609 Cuts at: 6386 7281 7392 7734 9345 10071 10158 10182 10872 Size: 895 111 342 1611 726 87 24 690 Cuts at: 10872 11047 12123 12795 Size: 175 1076 672 Fragments arranged by size: 2609 1611 1089 1076 895 726 690 672 342 339 296 290 270 253 229 209 189 183 175 129 118 111 105 87 54 24 24 ApaI G_GGCC'C Cuts at: 0 52 1254 3258 5588 7033 7206 9487 11131 Size: 52 1202 2004 2330 1445 173 2281 1644 Cuts at: 11131 11507 12795 Size: 376 1288 Fragments arranged by size: 2330 2281 2004 1644 1445 1288 1202 376 173 52 ApaLI G'TGCA_C Cuts at: 0 2008 2912 4225 6914 12795 Size: 2008 904 1313 2689 5881 Fragments arranged by size: 5881 2689 2008 1313 904 ApoI r'AATT_y Cuts at: 0 1621 2689 8655 10786 12387 12400 12795 Size: 1621 1068 5966 2131 1601 13 395 Fragments arranged by size: 5966 2131 1621 1601 1068 395 13 AvaI C'yCGr_G Cuts at: 0 111 828 1384 1590 5052 7035 8835 8964 Size: 111 717 556 206 3462 1983 1800 129 Cuts at: 8964 10003 10446 11132 11745 12795 Size: 1039 443 686 613 1050 Fragments arranged by size: 3462 1983 1800 1050 1039 717 686 613 556 443 206 129 111 BaeI ACnnnnGTAyCnnnnnnn_nnnnn' Cuts at: 0 577 610 4135 4168 6554 6587 7387 7420 Size: 577 33 3525 33 2386 33 800 33 Cuts at: 7420 8193 8226 12795 Size: 773 33 4569 Fragments arranged by size: 4569 3525 2386 800 773 577 33 33 33 33 33 BamHI G'GATC_C Cuts at: 0 1073 3320 9215 12308 12528 12795 Size: 1073 2247 5895 3093 220 267 Fragments arranged by size: 5895 3093 2247 1073 267 220 BanI G'GyrC_C Cuts at: 0 528 662 1065 1431 4319 4729 5019 6346 Size: 528 134 403 366 2888 410 290 1327 Cuts at: 6346 6484 6570 6985 8895 8914 10683 11202 11899 Size: 138 86 415 1910 19 1769 519 697 Cuts at: 11899 11994 12453 12517 12795 Size: 95 459 64 278 Fragments arranged by size: 2888 1910 1769 1327 697 528 519 459 415 410 403 366 290 278 138 134 95 86 64 19 BanII G_rGCy'C Cuts at: 0 52 518 1254 3258 3568 3746 4710 5588 Size: 52 466 736 2004 310 178 964 878 Cuts at: 5588 6029 6044 6314 7033 7206 7232 7589 8152 Size: 441 15 270 719 173 26 357 563 Cuts at: 8152 8175 9164 9487 9572 10657 10817 11131 11507 Size: 23 989 323 85 1085 160 314 376 Cuts at: 11507 12221 12795 Size: 714 574 Fragments arranged by size: 2004 1085 989 964 878 736 719 714 574 563 466 441 376 357 323 314 310 270 178 173 160 85 52 26 23 15 BbsI GAAGACnn'nnnn_ Cuts at: 0 434 5213 6703 7329 8157 11172 11411 12324 Size: 434 4779 1490 626 828 3015 239 913 Cuts at: 12324 12795 Size: 471 Fragments arranged by size: 4779 3015 1490 913 828 626 471 434 239 BbvCI CC'TCA_GC Cuts at: 0 304 1094 1300 1537 2704 3446 3940 4567 Size: 304 790 206 237 1167 742 494 627 Cuts at: 4567 5911 6067 6552 12795 Size: 1344 156 485 6243 Fragments arranged by size: 6243 1344 1167 790 742 627 494 485 304 237 206 156 BcgI CGAnnnnnnTGCnnnnnnnnnn_nn' Cuts at: 0 4050 4084 4899 4933 7446 7480 8797 8831 Size: 4050 34 815 34 2513 34 1317 34 Cuts at: 8831 11113 11147 12795 Size: 2282 34 1648 Fragments arranged by size: 4050 2513 2282 1648 1317 815 34 34 34 34 34 BciVI GTATCCnnnnn_n' Cuts at: 0 8622 12795 Size: 8622 4173 BclI T'GATC_A Cuts at: 0 3860 4664 5138 9023 12110 12795 Size: 3860 804 474 3885 3087 685 Fragments arranged by size: 3885 3860 3087 804 685 474 BfrBI ATG'CAT Cuts at: 0 9293 12795 Size: 9293 3502 BglI GCCn_nnn'nGGC Cuts at: 0 4252 4748 8701 9168 9356 12795 Size: 4252 496 3953 467 188 3439 Fragments arranged by size: 4252 3953 3439 496 467 188 BglII A'GATC_T Cuts at: 0 2558 4013 5147 10007 11544 11834 12795 Size: 2558 1455 1134 4860 1537 290 961 Fragments arranged by size: 4860 2558 1537 1455 1134 961 290 BlpI GC'TnA_GC Cuts at: 0 2594 3149 5233 10192 12795 Size: 2594 555 2084 4959 2603 Fragments arranged by size: 4959 2603 2594 2084 555 Bme1580I G_kGCm'C Cuts at: 0 52 1254 2012 2093 2916 3258 4229 4734 Size: 52 1202 758 81 823 342 971 505 Cuts at: 4734 5372 5588 6605 6918 7033 7206 9487 11131 Size: 638 216 1017 313 115 173 2281 1644 Cuts at: 11131 11507 11902 12522 12649 12786 12795 Size: 376 395 620 127 137 9 Fragments arranged by size: 2281 1644 1202 1017 971 823 758 638 620 505 395 376 342 313 216 173 137 127 115 81 52 9 BmgBI CAC'GTC Cuts at: 0 4503 11715 12795 Size: 4503 7212 1080 Fragments arranged by size: 7212 4503 1080 BmrI ACTGGGnnnn_n' Cuts at: 0 1071 1770 3339 4272 6362 8943 10043 10081 Size: 1071 699 1569 933 2090 2581 1100 38 Cuts at: 10081 11305 11673 12031 12795 Size: 1224 368 358 764 Fragments arranged by size: 2581 2090 1569 1224 1100 1071 933 764 699 368 358 38 BplI GAGnnnnnCTCnnnnnnnn_nnnnn' Cuts at: 0 1280 1410 6277 12795 Size: 1280 130 4867 6518 Fragments arranged by size: 6518 4867 1280 130 BpmI CTGGAGnnnnnnnnnnnnnn_nn' Cuts at: 0 140 1636 2047 2119 2167 2284 2662 3024 Size: 140 1496 411 72 48 117 378 362 Cuts at: 3024 3178 3421 3721 3760 3973 4126 4155 4378 Size: 154 243 300 39 213 153 29 223 Cuts at: 4378 6043 6154 6357 6484 6922 7274 8488 8578 Size: 1665 111 203 127 438 352 1214 90 Cuts at: 8578 8599 8921 9202 9334 9856 9889 10126 10963 Size: 21 322 281 132 522 33 237 837 Cuts at: 10963 11506 12196 12243 12795 Size: 543 690 47 552 Fragments arranged by size: 1665 1496 1214 837 690 552 543 522 438 411 378 362 352 322 300 281 243 237 223 213 203 154 153 140 132 127 117 111 90 72 48 47 39 33 29 21 Bpu10I CC'TnA_GC Cuts at: 0 304 598 1094 1231 1255 1300 1436 1537 Size: 304 294 496 137 24 45 136 101 Cuts at: 1537 2704 3446 3940 4567 5911 6067 6391 6552 Size: 1167 742 494 627 1344 156 324 161 Cuts at: 6552 9538 11726 11999 12215 12795 Size: 2986 2188 273 216 580 Fragments arranged by size: 2986 2188 1344 1167 742 627 580 496 494 324 304 294 273 216 161 156 137 136 101 45 24 BpuEI CTTGAGnnnnnnnnnnnnnn_nn' Cuts at: 0 1654 4702 5287 5377 5488 6199 6247 6382 Size: 1654 3048 585 90 111 711 48 135 Cuts at: 6382 6709 7462 7873 8998 9868 10441 10831 11554 Size: 327 753 411 1125 870 573 390 723 Cuts at: 11554 11599 11974 12121 12130 12232 12795 Size: 45 375 147 9 102 563 Fragments arranged by size: 3048 1654 1125 870 753 723 711 585 573 563 411 390 375 327 147 135 111 102 90 48 45 9 BsaI GGTCTCn'nnnn_ Cuts at: 0 812 1381 1747 3949 4759 5542 6898 8641 Size: 812 569 366 2202 810 783 1356 1743 Cuts at: 8641 12795 Size: 4154 Fragments arranged by size: 4154 2202 1743 1356 812 810 783 569 366 BsaAI yAC'GTr Cuts at: 0 2911 5697 8815 12795 Size: 2911 2786 3118 3980 Fragments arranged by size: 3980 3118 2911 2786 BsaBI GATnn'nnATC Cuts at: 0 571 3355 9967 11543 12795 Size: 571 2784 6612 1576 1252 Fragments arranged by size: 6612 2784 1576 1252 571 BsaHI Gr'CG_yC Cuts at: 0 917 5638 7688 11969 12795 Size: 917 4721 2050 4281 826 Fragments arranged by size: 4721 4281 2050 917 826 BsaWI w'CCGG_w Cuts at: 0 4702 10686 12795 Size: 4702 5984 2109 Fragments arranged by size: 5984 4702 2109 BsaXI ACnnnnnCTCCnnnnnnn_nnn' Cuts at: 0 439 469 790 820 2272 2302 3022 3052 Size: 439 30 321 30 1452 30 720 30 Cuts at: 3052 3325 3355 3487 3517 4132 4162 6330 6360 Size: 273 30 132 30 615 30 2168 30 Cuts at: 6360 9307 9337 9424 9454 10399 10429 10987 11017 Size: 2947 30 87 30 945 30 558 30 Cuts at: 11017 11428 11458 11704 11734 12409 12439 12795 Size: 411 30 246 30 675 30 356 Fragments arranged by size: 2947 2168 1452 945 720 675 615 558 439 411 356 321 273 246 132 87 30 30 30 30 30 30 30 30 30 30 30 30 30 30 30 BseRI GAGGAGnnnnnnnn_nn' Cuts at: 0 594 949 1435 1438 2548 2599 2659 2818 Size: 594 355 486 3 1110 51 60 159 Cuts at: 2818 3280 3718 3978 4153 5344 5455 5740 5772 Size: 462 438 260 175 1191 111 285 32 Cuts at: 5772 6115 6202 6523 6540 6712 7462 7465 7639 Size: 343 87 321 17 172 750 3 174 Cuts at: 7639 8596 8659 8686 9322 9865 10105 10123 10188 Size: 957 63 27 636 543 240 18 65 Cuts at: 10188 11968 12795 Size: 1780 827 Fragments arranged by size: 1780 1191 1110 957 827 750 636 594 543 486 462 438 355 343 321 285 260 240 175 174 172 159 111 87 65 63 60 51 32 27 18 17 3 3 BseYI C'CCAG_C Cuts at: 0 2093 2392 4315 4391 4734 4743 4876 5293 Size: 2093 299 1923 76 343 9 133 417 Cuts at: 5293 5317 6028 7274 7734 7752 9345 9524 9588 Size: 24 711 1246 460 18 1593 179 64 Cuts at: 9588 9680 9861 9924 11296 12324 12524 12743 12795 Size: 92 181 63 1372 1028 200 219 52 Fragments arranged by size: 2093 1923 1593 1372 1246 1028 711 460 417 343 299 219 200 181 179 133 92 76 64 63 52 24 18 9 BsgI GTGCAGnnnnnnnnnnnnnn_nn' Cuts at: 0 78 1678 1864 1890 2800 3949 4066 4696 Size: 78 1600 186 26 910 1149 117 630 Cuts at: 4696 6640 7405 8683 12795 Size: 1944 765 1278 4112 Fragments arranged by size: 4112 1944 1600 1278 1149 910 765 630 186 117 78 26 BsiEI CG_ry'CG Cuts at: 0 4043 6972 7773 9613 12795 Size: 4043 2929 801 1840 3182 Fragments arranged by size: 4043 3182 2929 1840 801 BsiHKAI G_wGCw'C Cuts at: 0 69 1261 1298 1901 2012 2351 2916 4229 Size: 69 1192 37 603 111 339 565 1313 Cuts at: 4229 4710 5702 6918 7589 8175 9515 11243 11720 Size: 481 992 1216 671 586 1340 1728 477 Cuts at: 11720 11732 12221 12795 Size: 12 489 574 Fragments arranged by size: 1728 1340 1313 1216 1192 992 671 603 586 574 565 489 481 477 339 111 69 37 12 BsmI GAATG_Cn' Cuts at: 0 1017 3843 3890 4617 9295 12795 Size: 1017 2826 47 727 4678 3500 Fragments arranged by size: 4678 3500 2826 1017 727 47 BsmBI CGTCTCn'nnnn_ Cuts at: 0 9397 11875 12795 Size: 9397 2478 920 Fragments arranged by size: 9397 2478 920 Bsp1286I G_dGCh'C Cuts at: 0 52 69 518 1254 1261 1298 1901 2012 Size: 52 17 449 736 7 37 603 111 Cuts at: 2012 2093 2351 2916 3258 3568 3746 4229 4710 Size: 81 258 565 342 310 178 483 481 Cuts at: 4710 4734 5372 5588 5702 6029 6044 6314 6605 Size: 24 638 216 114 327 15 270 291 Cuts at: 6605 6918 7033 7206 7232 7589 8152 8175 9164 Size: 313 115 173 26 357 563 23 989 Cuts at: 9164 9487 9515 9572 10657 10817 11131 11243 11507 Size: 323 28 57 1085 160 314 112 264 Cuts at: 11507 11720 11732 11902 12221 12522 12649 12786 12795 Size: 213 12 170 319 301 127 137 9 Fragments arranged by size: 1085 989 736 638 603 565 563 483 481 449 357 342 327 323 319 314 313 310 301 291 270 264 258 216 213 178 173 170 160 137 127 115 114 112 111 81 57 52 37 28 26 24 23 17 15 12 9 7 BspHI T'CATG_A Cuts at: 0 2163 3605 3830 10598 10667 11681 12795 Size: 2163 1442 225 6768 69 1014 1114 Fragments arranged by size: 6768 2163 1442 1114 1014 225 69 BspMI ACCTGCnnnn'nnnn_ Cuts at: 0 516 1419 2366 2513 3419 4064 6513 7605 Size: 516 903 947 147 906 645 2449 1092 Cuts at: 7605 9425 10745 11384 12096 12284 12795 Size: 1820 1320 639 712 188 511 Fragments arranged by size: 2449 1820 1320 1092 947 906 903 712 645 639 516 511 188 147 BsrBI CCG'CTC Cuts at: 0 2649 3813 8501 12795 Size: 2649 1164 4688 4294 Fragments arranged by size: 4688 4294 2649 1164 BsrDI GCAATG_nn' Cuts at: 0 2195 2282 5951 7211 7746 9074 12022 12713 Size: 2195 87 3669 1260 535 1328 2948 691 Cuts at: 12713 12795 Size: 82 Fragments arranged by size: 3669 2948 2195 1328 1260 691 535 87 82 BsrFI r'CCGG_y Cuts at: 0 4363 5847 6894 8235 10187 11669 12795 Size: 4363 1484 1047 1341 1952 1482 1126 Fragments arranged by size: 4363 1952 1484 1482 1341 1126 1047 BsrGI T'GTAC_A Cuts at: 0 8336 9965 12197 12572 12795 Size: 8336 1629 2232 375 223 Fragments arranged by size: 8336 2232 1629 375 223 BssHII G'CGCG_C Cuts at: 0 9120 12795 Size: 9120 3675 BssSI C'ACGA_G Cuts at: 0 2917 7408 12668 12795 Size: 2917 4491 5260 127 Fragments arranged by size: 5260 4491 2917 127 BstAPI GCAn_nnn'nTGC Cuts at: 0 7392 8574 9177 9426 10538 12795 Size: 7392 1182 603 249 1112 2257 Fragments arranged by size: 7392 2257 1182 1112 603 249 BstEII G'GTnAC_C Cuts at: 0 1020 1566 2134 4305 7503 10905 12795 Size: 1020 546 568 2171 3198 3402 1890 Fragments arranged by size: 3402 3198 2171 1890 1020 568 546 BstXI CCAn_nnnn'nTGG Cuts at: 0 666 2898 4179 4344 4503 4779 5187 5721 Size: 666 2232 1281 165 159 276 408 534 Cuts at: 5721 6036 7143 7251 8094 9156 10941 11112 12795 Size: 315 1107 108 843 1062 1785 171 1683 Fragments arranged by size: 2232 1785 1683 1281 1107 1062 843 666 534 408 315 276 171 165 159 108 BstYI r'GATC_y Cuts at: 0 1073 1631 2372 2558 2756 3320 3815 4013 Size: 1073 558 741 186 198 564 495 198 Cuts at: 4013 4556 5009 5147 8279 9215 9605 10007 10178 Size: 543 453 138 3132 936 390 402 171 Cuts at: 10178 10271 10361 11544 11762 11834 12308 12528 12725 Size: 93 90 1183 218 72 474 220 197 Cuts at: 12725 12795 Size: 70 Fragments arranged by size: 3132 1183 1073 936 741 564 558 543 495 474 453 402 390 220 218 198 198 197 186 171 138 93 90 72 70 BstZ17I GTA'TAC Cuts at: 0 8009 12795 Size: 8009 4786 Bsu36I CC'TnA_GG Cuts at: 0 44 7318 12795 Size: 44 7274 5477 Fragments arranged by size: 7274 5477 44 BtgI C'CryG_G Cuts at: 0 229 1069 2153 3806 4037 4337 4844 5108 Size: 229 840 1084 1653 231 300 507 264 Cuts at: 5108 5552 6566 6608 6954 7025 7063 8609 9155 Size: 444 1014 42 346 71 38 1546 546 Cuts at: 9155 10343 11472 11784 12498 12795 Size: 1188 1129 312 714 297 Fragments arranged by size: 1653 1546 1188 1129 1084 1014 840 714 546 507 444 346 312 300 297 264 231 229 71 42 38 BtgZI GCGATGnnnnnnnnnn'nnnn_ Cuts at: 0 4062 4296 8622 9246 9461 10437 12227 12795 Size: 4062 234 4326 624 215 976 1790 568 Fragments arranged by size: 4326 4062 1790 976 624 568 234 215 BtsI GCAGTG_nn' Cuts at: 0 69 460 499 1159 1252 1828 2227 4466 Size: 69 391 39 660 93 576 399 2239 Cuts at: 4466 5039 6369 7501 9337 12121 12795 Size: 573 1330 1132 1836 2784 674 Fragments arranged by size: 2784 2239 1836 1330 1132 674 660 576 573 399 391 93 69 39 ClaI AT'CG_AT Cuts at: 0 3143 6878 9047 12795 Size: 3143 3735 2169 3748 Fragments arranged by size: 3748 3735 3143 2169 DraIII CAC_nnn'GTG Cuts at: 0 1120 8136 9144 11362 11430 12795 Size: 1120 7016 1008 2218 68 1365 Fragments arranged by size: 7016 2218 1365 1120 1008 68 DrdI GACnn_nn'nnGTC Cuts at: 0 1369 1575 2677 3087 3601 8032 9526 12795 Size: 1369 206 1102 410 514 4431 1494 3269 Fragments arranged by size: 4431 3269 1494 1369 1102 514 410 206 EaeI y'GGCC_r Cuts at: 0 1203 1516 1700 2075 2471 2975 4040 4299 Size: 1203 313 184 375 396 504 1065 259 Cuts at: 4299 4793 4841 4868 5064 5111 6366 7364 7658 Size: 494 48 27 196 47 1255 998 294 Cuts at: 7658 7770 7805 8233 8258 8633 8771 8827 9146 Size: 112 35 428 25 375 138 56 319 Cuts at: 9146 9458 10346 10388 10931 12026 12584 12795 Size: 312 888 42 543 1095 558 211 Fragments arranged by size: 1255 1203 1095 1065 998 888 558 543 504 494 428 396 375 375 319 313 312 294 259 211 196 184 138 112 56 48 47 42 35 27 25 EagI C'GGCC_G Cuts at: 0 4040 7770 12795 Size: 4040 3730 5025 Fragments arranged by size: 5025 4040 3730 EarI CTCTTCn'nnn_ Cuts at: 0 1090 1380 2062 2174 3556 5104 5404 6431 Size: 1090 290 682 112 1382 1548 300 1027 Cuts at: 6431 6500 7684 7930 8491 8992 9050 10372 10764 Size: 69 1184 246 561 501 58 1322 392 Cuts at: 10764 12795 Size: 2031 Fragments arranged by size: 2031 1548 1382 1322 1184 1090 1027 682 561 501 392 300 290 246 112 69 58 EciI GGCGGAnnnnnnnnn_nn' Cuts at: 0 6843 11263 12795 Size: 6843 4420 1532 Fragments arranged by size: 6843 4420 1532 EcoICRI GAG'CTC Cuts at: 0 4708 7587 8173 12219 12795 Size: 4708 2879 586 4046 576 Fragments arranged by size: 4708 4046 2879 586 576 Eco57MI CTGrAGnnnnnnnnnnnnnn_nn' Cuts at: 0 140 446 754 913 1030 1049 1636 2047 Size: 140 306 308 159 117 19 587 411 Cuts at: 2047 2119 2167 2284 2662 2977 2991 3024 3178 Size: 72 48 117 378 315 14 33 154 Cuts at: 3178 3421 3580 3700 3721 3760 3973 4126 4155 Size: 243 159 120 21 39 213 153 29 Cuts at: 4155 4378 5110 6043 6109 6154 6357 6484 6764 Size: 223 732 933 66 45 203 127 280 Cuts at: 6764 6922 7274 7687 8269 8488 8578 8599 8921 Size: 158 352 413 582 219 90 21 322 Cuts at: 8921 9202 9334 9340 9856 9889 9940 9942 10126 Size: 281 132 6 516 33 51 2 184 Cuts at: 10126 10180 10501 10963 11401 11506 12196 12243 12795 Size: 54 321 462 438 105 690 47 552 Fragments arranged by size: 933 732 690 587 582 552 516 462 438 413 411 378 352 322 321 315 308 306 281 280 243 223 219 213 203 184 159 159 158 154 153 140 132 127 120 117 117 105 90 72 66 54 51 48 47 45 39 33 33 29 21 21 19 14 6 2 EcoNI CCTnn'n_nnAGG Cuts at: 0 373 1439 1540 1843 2509 4783 5383 5467 Size: 373 1066 101 303 666 2274 600 84 Cuts at: 5467 7330 7726 7888 8578 8740 9181 9223 9244 Size: 1863 396 162 690 162 441 42 21 Cuts at: 9244 10108 11116 12136 12795 Size: 864 1008 1020 659 Fragments arranged by size: 2274 1863 1066 1020 1008 864 690 666 659 600 441 396 373 303 162 162 101 84 42 21 EcoO109I rG'GnC_Cy Cuts at: 0 38 48 86 96 873 1098 1251 1279 Size: 38 10 38 10 777 225 153 28 Cuts at: 1279 1955 2316 2466 3936 4032 4101 4253 4274 Size: 676 361 150 1470 96 69 152 21 Cuts at: 4274 4863 4880 5388 6114 6258 7030 7202 7203 Size: 589 17 508 726 144 772 172 1 Cuts at: 7203 7323 7881 8067 8553 8733 8961 9484 11127 Size: 120 558 186 486 180 228 523 1643 Cuts at: 11127 11128 11504 11610 12795 Size: 1 376 106 1185 Fragments arranged by size: 1643 1470 1185 777 772 726 676 589 558 523 508 486 376 361 228 225 186 180 172 153 152 150 144 120 106 96 69 38 38 28 21 17 10 10 1 1 EcoRI G'AATT_C Cuts at: 0 2689 8655 10786 12795 Size: 2689 5966 2131 2009 Fragments arranged by size: 5966 2689 2131 2009 EcoRV GAT'ATC Cuts at: 0 7968 12795 Size: 7968 4827 FalI AAGnnnnnCTTnnnnnnnn_nnnnn' Cuts at: 0 1374 1485 1506 3660 5115 6135 8436 9156 Size: 1374 111 21 2154 1455 1020 2301 720 Cuts at: 9156 12795 Size: 3639 Fragments arranged by size: 3639 2301 2154 1455 1374 1020 720 111 21 FspI TGC'GCA Cuts at: 0 1144 1273 1708 1789 3304 4060 5031 8119 Size: 1144 129 435 81 1515 756 971 3088 Cuts at: 8119 8521 8782 9793 11152 11551 12795 Size: 402 261 1011 1359 399 1244 Fragments arranged by size: 3088 1515 1359 1244 1144 1011 971 756 435 402 399 261 129 81 HaeII r_GCGC'y Cuts at: 0 3798 3971 4474 5098 7485 7735 9240 9687 Size: 3798 173 503 624 2387 250 1505 447 Cuts at: 9687 11493 11676 11744 12795 Size: 1806 183 68 1051 Fragments arranged by size: 3798 2387 1806 1505 1051 624 503 447 250 183 173 68 Hin4I GAynnnnnvTCnnnnnnnn_nnnnn' Cuts at: 0 767 790 799 822 2272 2304 2817 2849 Size: 767 23 9 23 1450 32 513 32 Cuts at: 2849 3022 3054 3118 3150 3325 3357 3375 3407 Size: 173 32 64 32 175 32 18 32 Cuts at: 3407 3562 3594 4003 4035 4692 4724 4912 4944 Size: 155 32 409 32 657 32 188 32 Cuts at: 4944 5555 5587 7540 7561 7572 7593 9631 9663 Size: 611 32 1953 21 11 21 2038 32 Cuts at: 9663 10662 10681 10694 10713 10959 10987 10991 11019 Size: 999 19 13 19 246 28 4 28 Cuts at: 11019 11428 11460 11704 11736 12153 12185 12409 12441 Size: 409 32 244 32 417 32 224 32 Cuts at: 12441 12442 12474 12651 12683 12795 Size: 1 32 177 32 112 Fragments arranged by size: 2038 1953 1450 999 767 657 611 513 417 409 409 246 244 224 188 177 175 173 155 112 64 32 32 32 32 32 32 32 32 32 32 32 32 32 32 32 32 32 32 28 28 23 23 21 21 19 19 18 13 11 9 4 1 HincII GTy'rAC Cuts at: 0 3509 5688 8202 12467 12795 Size: 3509 2179 2514 4265 328 Fragments arranged by size: 4265 3509 2514 2179 328 HindIII A'AGCT_T Cuts at: 0 411 12795 Size: 411 12384 HpaI GTT'AAC Cuts at: 0 12467 12795 Size: 12467 328 KpnI G_GTAC'C Cuts at: 0 6574 12795 Size: 6574 6221 MmeI TCCrACnnnnnnnnnnnnnnnnnn_nn' Cuts at: 0 320 387 668 3084 3089 3368 3899 5127 Size: 320 67 281 2416 5 279 531 1228 Cuts at: 5127 5441 5837 7136 9359 10406 10520 10787 11024 Size: 314 396 1299 2223 1047 114 267 237 Cuts at: 11024 12795 Size: 1771 Fragments arranged by size: 2416 2223 1771 1299 1228 1047 531 396 320 314 281 279 267 237 114 67 5 MscI TGG'CCA Cuts at: 0 1702 2077 2473 2977 4301 4795 4843 4870 Size: 1702 375 396 504 1324 494 48 27 Cuts at: 4870 5113 8260 8773 9148 10348 10390 10933 12028 Size: 243 3147 513 375 1200 42 543 1095 Cuts at: 12028 12795 Size: 767 Fragments arranged by size: 3147 1702 1324 1200 1095 767 543 513 504 494 396 375 375 243 48 42 27 MslI CAynn'nnrTG Cuts at: 0 1498 2479 2896 3604 4042 4117 4342 4843 Size: 1498 981 417 708 438 75 225 501 Cuts at: 4843 4921 5719 6598 7249 7252 7351 8131 8399 Size: 78 798 879 651 3 99 780 268 Cuts at: 8399 8920 10237 10342 10600 11023 11852 12580 12718 Size: 521 1317 105 258 423 829 728 138 Cuts at: 12718 12795 Size: 77 Fragments arranged by size: 1498 1317 981 879 829 798 780 728 708 651 521 501 438 423 417 268 258 225 138 105 99 78 77 75 3 MspA1I CmG'CkG Cuts at: 0 270 1679 2097 2132 2871 2955 2973 3156 Size: 270 1409 418 35 739 84 18 183 Cuts at: 3156 3585 3723 3777 4455 4566 4738 4747 4977 Size: 429 138 54 678 111 172 9 230 Cuts at: 4977 5629 5730 6005 6417 7065 7278 7389 7460 Size: 652 101 275 412 648 213 111 71 Cuts at: 7460 7769 8826 9342 9463 9524 10125 10886 11913 Size: 309 1057 516 121 61 601 761 1027 Cuts at: 11913 12174 12328 12524 12546 12795 Size: 261 154 196 22 249 Fragments arranged by size: 1409 1057 1027 761 739 678 652 648 601 516 429 418 412 309 275 270 261 249 230 213 196 183 172 154 138 121 111 111 101 84 71 61 54 35 22 18 9 NaeI GCC'GGC Cuts at: 0 4365 6896 8237 12795 Size: 4365 2531 1341 4558 Fragments arranged by size: 4558 4365 2531 1341 NcoI C'CATG_G Cuts at: 0 3806 4337 4844 6566 6608 7025 8609 11472 Size: 3806 531 507 1722 42 417 1584 2863 Cuts at: 11472 12498 12795 Size: 1026 297 Fragments arranged by size: 3806 2863 1722 1584 1026 531 507 417 297 42 NgoMIV G'CCGG_C Cuts at: 0 4363 6894 8235 12795 Size: 4363 2531 1341 4560 Fragments arranged by size: 4560 4363 2531 1341 NotI GC'GGCC_GC Cuts at: 0 7770 12795 Size: 7770 5025 NsiI A_TGCA'T Cuts at: 0 9295 12795 Size: 9295 3500 NspI r_CATG'y Cuts at: 0 1110 1194 1213 1818 2794 3222 3318 4122 Size: 1110 84 19 605 976 428 96 804 Cuts at: 4122 4452 5676 5838 6645 6894 7350 7854 9429 Size: 330 1224 162 807 249 456 504 1575 Cuts at: 9429 12795 Size: 3366 Fragments arranged by size: 3366 1575 1224 1110 976 807 804 605 504 456 428 330 249 162 96 84 19 PacI TTA_AT'TAA Cuts at: 0 1940 12795 Size: 1940 10855 PasI CC'CwG_GG Cuts at: 0 11112 11508 12795 Size: 11112 396 1287 Fragments arranged by size: 11112 1287 396 PciI A'CATG_T Cuts at: 0 4118 5834 12795 Size: 4118 1716 6961 Fragments arranged by size: 6961 4118 1716 PflMI CCAn_nnn'nTGG Cuts at: 0 779 2682 2744 2829 2973 3237 3807 6636 Size: 779 1903 62 85 144 264 570 2829 Cuts at: 6636 6948 7734 8219 9144 9725 10071 10083 12795 Size: 312 786 485 925 581 346 12 2712 Fragments arranged by size: 2829 2712 1903 925 786 779 581 570 485 346 312 264 144 85 62 12 PfoI T'CCnGG_A Cuts at: 0 126 434 920 2375 2621 3040 4094 4520 Size: 126 308 486 1455 246 419 1054 426 Cuts at: 4520 5462 6131 7427 7958 8057 9218 9833 11579 Size: 942 669 1296 531 99 1161 615 1746 Cuts at: 11579 12509 12795 Size: 930 286 Fragments arranged by size: 1746 1455 1296 1161 1054 942 930 669 615 531 486 426 419 308 286 246 126 99 PmlI CAC'GTG Cuts at: 0 2911 12795 Size: 2911 9884 PpiI GAACnnnnnCTCnnnnnnnn_nnnnn' Cuts at: 0 2794 2826 6301 6333 12795 Size: 2794 32 3475 32 6462 Fragments arranged by size: 6462 3475 2794 32 32 PpuMI rG'GwC_Cy Cuts at: 0 38 86 873 1098 4032 4101 4274 5388 Size: 38 48 787 225 2934 69 173 1114 Cuts at: 5388 7323 7881 8553 8733 8961 11610 12795 Size: 1935 558 672 180 228 2649 1185 Fragments arranged by size: 2934 2649 1935 1185 1114 787 672 558 228 225 180 173 69 48 38 PspOMI G'GGCC_C Cuts at: 0 48 1250 3254 5584 7029 7202 9483 11127 Size: 48 1202 2004 2330 1445 173 2281 1644 Cuts at: 11127 11503 12795 Size: 376 1292 Fragments arranged by size: 2330 2281 2004 1644 1445 1292 1202 376 173 48 PspXI vC'TCGA_Gb Cuts at: 0 1590 12795 Size: 1590 11205 PsrI GAACnnnnnnTACnnnnnnn_nnnnn' Cuts at: 0 5041 5073 9406 9438 12795 Size: 5041 32 4333 32 3357 Fragments arranged by size: 5041 4333 3357 32 32 PstI C_TGCA'G Cuts at: 0 75 506 1823 2234 2870 3416 5384 5491 Size: 75 431 1317 411 636 546 1968 107 Cuts at: 5491 8960 9422 11327 11937 12107 12302 12386 12795 Size: 3469 462 1905 610 170 195 84 409 Fragments arranged by size: 3469 1968 1905 1317 636 610 546 462 431 411 409 195 170 107 84 75 PvuI CG_AT'CG Cuts at: 0 9613 12795 Size: 9613 3182 PvuII CAG'CTG Cuts at: 0 1679 2097 2871 2955 2973 3156 3585 3777 Size: 1679 418 774 84 18 183 429 192 Cuts at: 3777 4566 4738 4747 5629 5730 6417 7278 7389 Size: 789 172 9 882 101 687 861 111 Cuts at: 7389 7460 9524 10125 11913 12174 12328 12546 12795 Size: 71 2064 601 1788 261 154 218 249 Fragments arranged by size: 2064 1788 1679 882 861 789 774 687 601 429 418 261 249 218 192 183 172 154 111 101 84 71 18 9 SacI G_AGCT'C Cuts at: 0 4710 7589 8175 12221 12795 Size: 4710 2879 586 4046 574 Fragments arranged by size: 4710 4046 2879 586 574 SacII CC_GC'GG Cuts at: 0 7066 12795 Size: 7066 5729 SalI G'TCGA_C Cuts at: 0 3507 12795 Size: 3507 9288 SanDI GG'GwC_CC Cuts at: 0 86 12795 Size: 86 12709 SapI GCTCTTCn'nnn_ Cuts at: 0 2174 3556 5104 5404 8491 12795 Size: 2174 1382 1548 300 3087 4304 Fragments arranged by size: 4304 3087 2174 1548 1382 300 SbfI CC_TGCA'GG Cuts at: 0 3416 5384 5491 12795 Size: 3416 1968 107 7304 Fragments arranged by size: 7304 3416 1968 107 ScaI AGT'ACT Cuts at: 0 1060 5607 10414 10880 12068 12795 Size: 1060 4547 4807 466 1188 727 Fragments arranged by size: 4807 4547 1188 1060 727 466 SexAI A'CCwGG_T Cuts at: 0 950 1985 2675 3923 12795 Size: 950 1035 690 1248 8872 Fragments arranged by size: 8872 1248 1035 950 690 SfcI C'TryA_G Cuts at: 0 24 71 502 1819 1950 2013 2230 2866 Size: 24 47 431 1317 131 63 217 636 Cuts at: 2866 3412 5380 5487 5993 7900 8071 8956 9418 Size: 546 1968 107 506 1907 171 885 462 Cuts at: 9418 10214 10518 10527 11323 11388 11736 11933 12103 Size: 796 304 9 796 65 348 197 170 Cuts at: 12103 12298 12382 12795 Size: 195 84 413 Fragments arranged by size: 1968 1907 1317 885 796 796 636 546 506 462 431 413 348 304 217 197 195 171 170 131 107 84 65 63 47 24 9 SfiI GGCCn_nnn'nGGCC Cuts at: 0 4252 12795 Size: 4252 8543 SmaI CCC'GGG Cuts at: 0 113 830 5054 7037 8837 8966 12795 Size: 113 717 4224 1983 1800 129 3829 Fragments arranged by size: 4224 3829 1983 1800 717 129 113 SmlI C'TyrA_G Cuts at: 0 1590 1669 4717 5302 5392 5503 6214 6262 Size: 1590 79 3048 585 90 111 711 48 Cuts at: 6262 6397 6724 7477 7888 8977 9883 10420 10810 Size: 135 327 753 411 1089 906 537 390 Cuts at: 10810 11569 11614 11989 12136 12145 12247 12795 Size: 759 45 375 147 9 102 548 Fragments arranged by size: 3048 1590 1089 906 759 753 711 585 548 537 411 390 375 327 147 135 111 102 90 79 48 45 9 SpeI A'CTAG_T Cuts at: 0 12069 12795 Size: 12069 726 SphI G_CATG'C Cuts at: 0 1194 3318 4452 7350 12795 Size: 1194 2124 1134 2898 5445 Fragments arranged by size: 5445 2898 2124 1194 1134 StuI AGG'CCT Cuts at: 0 508 977 2236 3577 4789 5485 12235 12304 Size: 508 469 1259 1341 1212 696 6750 69 Cuts at: 12304 12538 12795 Size: 234 257 Fragments arranged by size: 6750 1341 1259 1212 696 508 469 257 234 69 StyI C'CwwG_G Cuts at: 0 2213 2243 2760 3242 3371 3806 4337 4496 Size: 2213 30 517 482 129 435 531 159 Cuts at: 4496 4790 4844 6566 6608 7025 7167 7331 7341 Size: 294 54 1722 42 417 142 164 10 Cuts at: 7341 7367 8081 8313 8591 8609 8918 9080 9089 Size: 26 714 232 278 18 309 162 9 Cuts at: 9089 9149 11397 11472 12230 12498 12563 12795 Size: 60 2248 75 758 268 65 232 Fragments arranged by size: 2248 2213 1722 758 714 531 517 482 435 417 309 294 278 268 232 232 164 162 159 142 129 75 65 60 54 42 30 26 18 10 9 TaqII GACCGAnnnnnnnnn_nn' Cuts at: 0 219 1053 2095 2368 4307 5770 6146 6334 Size: 219 834 1042 273 1939 1463 376 188 Cuts at: 6334 6522 6939 7448 7750 7951 8821 9105 10372 Size: 188 417 509 302 201 870 284 1267 Cuts at: 10372 11989 12009 12624 12748 12795 Size: 1617 20 615 124 47 Fragments arranged by size: 1939 1617 1463 1267 1042 870 834 615 509 417 376 302 284 273 219 201 188 188 124 47 20 TatI w'GTAC_w Cuts at: 0 896 1058 1604 1811 3525 4121 5605 7628 Size: 896 162 546 207 1714 596 1484 2023 Cuts at: 7628 8336 9422 9965 10334 10412 10878 11618 12066 Size: 708 1086 543 369 78 466 740 448 Cuts at: 12066 12072 12197 12572 12795 Size: 6 125 375 223 Fragments arranged by size: 2023 1714 1484 1086 896 740 708 596 546 543 466 448 375 369 223 207 162 125 78 6 TstI CACnnnnnnTCCnnnnnnn_nnnnn' Cuts at: 0 439 471 1820 1852 3487 3519 6330 6362 Size: 439 32 1349 32 1635 32 2811 32 Cuts at: 6362 9200 9232 9307 9339 9899 9931 12747 12779 Size: 2838 32 75 32 560 32 2816 32 Cuts at: 12779 12795 Size: 16 Fragments arranged by size: 2838 2816 2811 1635 1349 560 439 75 32 32 32 32 32 32 32 32 16 Tth111I GACn'n_nGTC Cuts at: 0 1918 2434 3339 7111 12795 Size: 1918 516 905 3772 5684 Fragments arranged by size: 5684 3772 1918 905 516 XbaI T'CTAG_A Cuts at: 0 1290 12795 Size: 1290 11505 XcmI CCAnnnn_n'nnnnTGG Cuts at: 0 2481 4776 7668 8418 8607 10980 12332 12795 Size: 2481 2295 2892 750 189 2373 1352 463 Fragments arranged by size: 2892 2481 2373 2295 1352 750 463 189 XhoI C'TCGA_G Cuts at: 0 1590 12795 Size: 1590 11205 XmaI C'CCGG_G Cuts at: 0 111 828 5052 7035 8835 8964 12795 Size: 111 717 4224 1983 1800 129 3831 Fragments arranged by size: 4224 3831 1983 1800 717 129 111 XmnI GAAnn'nnTTC Cuts at: 0 2056 2842 3055 4546 12795 Size: 2056 786 213 1491 8249 Fragments arranged by size: 8249 2056 1491 786 213 ZraI GAC'GTC Cuts at: 0 5639 11970 12795 Size: 5639 6331 825 Fragments arranged by size: 6331 5639 825 Enzymes that do cut: AarI AatII AccI Acc65I AcuI AfeI AflIII AhdI AleI AlfI AlwNI ApaI ApaLI ApoI AvaI BaeI BamHI BanI BanII BbsI BbvCI BcgI BciVI BclI BfrBI BglI BglII BlpI Bme1580I BmgBI BmrI BplI BpmI Bpu10I BpuEI BsaI BsaAI BsaBI BsaHI BsaWI BsaXI BseRI BseYI BsgI BsiEI BsiHKAI BsmI BsmBI Bsp1286I BspHI BspMI BsrBI BsrDI BsrFI BsrGI BssHII BssSI BstAPI BstEII BstXI BstYI BstZ17I Bsu36I BtgI BtgZI BtsI ClaI DraIII DrdI EaeI EagI EarI EciI EcoICRI Eco57MI EcoNI EcoO109I EcoRI EcoRV FalI FspI HaeII Hin4I HincII HindIII HpaI KpnI MmeI MscI MslI MspA1I NaeI NcoI NgoMIV NotI NsiI NspI PacI PasI PciI PflMI PfoI PmlI PpiI PpuMI PspOMI PspXI PsrI PstI PvuI PvuII SacI SacII SalI SanDI SapI SbfI ScaI SexAI SfcI SfiI SmaI SmlI SpeI SphI StuI StyI TaqII TatI TstI Tth111I XbaI XcmI XhoI XmaI XmnI ZraI Enzymes that do not cut: AclI AflII AgeI AloI AscI AseI AsiSI AvrII BbeI BmtI BsiWI BspEI BstBI CspCI DraI FseI FspAI KasI MfeI MluI NarI NdeI NheI NruI PmeI PshAI PsiI RsrII SfoI SgfI SgrAI SnaBI SrfI SspI SwaI