Result of FASTA (ccds) for pF1KSDA0976
FASTA searches a protein or DNA sequence data bank 36.3.4 Apr, 2011
Please cite:
W.R. Pearson & D.J. Lipman PNAS (1988) 85:2444-2448

Query: pF1KSDA0976, 364 aa
  1>>>pF1KSDA0976 364 - 364 aa - 364 aa
Library: human.CCDS.faa
  18511270 residues in 32554 sequences

Statistics:  Expectation_n fit: rho(ln(x))= 6.0249+/-0.00088; mu= 12.9729+/- 0.053
 mean_var=82.2164+/-15.994, 0's: 0 Z-trim(107.7): 36  B-trim: 41 in 1/49
 Lambda= 0.141447
 statistics sampled from 9733 (9765) to 9733 sequences
Algorithm: FASTA (3.7 Nov 2010) [optimized]
Parameters: BL50 matrix (15:-5), open/ext: -10/-2
 ktup: 2, E-join: 1 (0.676), E-opt: 0.2 (0.3), width:  16
 Scan time:  1.930

The best scores are:                                      opt bits E(32554)
CCDS30785.1 NTNG1 gene_id:22854|Hs108|chr1         ( 438) 2561 532.3 2.9e-151
CCDS81354.1 NTNG1 gene_id:22854|Hs108|chr1         ( 460) 2560 532.1 3.5e-151
CCDS44179.1 NTNG1 gene_id:22854|Hs108|chr1         ( 480) 2560 532.2 3.6e-151
CCDS44180.1 NTNG1 gene_id:22854|Hs108|chr1         ( 539) 2560 532.2  4e-151
CCDS6946.1 NTNG2 gene_id:84628|Hs108|chr9          ( 530) 1492 314.2 1.6e-85
CCDS32787.1 LAMA1 gene_id:284217|Hs108|chr18       (3075)  432 98.3 9.3e-20
CCDS33502.1 LAMA5 gene_id:3911|Hs108|chr20         (3695)  431 98.1 1.3e-19
CCDS5138.1 LAMA2 gene_id:3908|Hs108|chr6           (3122)  425 96.9 2.5e-19
CCDS45838.1 LAMA3 gene_id:3909|Hs108|chr18         (3277)  402 92.2 6.9e-18
CCDS42419.1 LAMA3 gene_id:3909|Hs108|chr18         (3333)  402 92.2   7e-18
CCDS9054.1 NTN4 gene_id:59277|Hs108|chr12          ( 628)  345 80.2 5.3e-15
CCDS11148.1 NTN1 gene_id:9423|Hs108|chr17          ( 604)  318 74.7 2.4e-13
CCDS10469.1 NTN3 gene_id:4917|Hs108|chr16          ( 580)  314 73.9   4e-13
CCDS83218.1 LAMB4 gene_id:22798|Hs108|chr7         ( 772)  302 71.5 2.8e-12
CCDS34732.1 LAMB4 gene_id:22798|Hs108|chr7         (1761)  302 71.7 5.6e-12
CCDS5750.1 LAMB1 gene_id:3912|Hs108|chr7           (1786)  284 68.0 7.3e-11


>>CCDS30785.1 NTNG1 gene_id:22854|Hs108|chr1              (438 aa)
 initn: 2587 init1: 2561 opt: 2561  Z-score: 2829.1  bits: 532.3 E(32554): 2.9e-151
Smith-Waterman score: 2561; 99.7% identity (100.0% similar) in 363 aa overlap (1-363:1-363)

               10        20        30        40        50        60
pF1KSD MYLSRFLSIHALWVTVSSVMQPYPLVWGHYDLCKTQIYTEEGKVWDYMACQPESTDMTKY
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS30 MYLSRFLSIHALWVTVSSVMQPYPLVWGHYDLCKTQIYTEEGKVWDYMACQPESTDMTKY
               10        20        30        40        50        60

               70        80        90       100       110       120
pF1KSD LKVKLDPPDITCGDPPETFCAMGNPYMCNNECDASTPELAHPPELMFDFEGRHPSTFWQS
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS30 LKVKLDPPDITCGDPPETFCAMGNPYMCNNECDASTPELAHPPELMFDFEGRHPSTFWQS
               70        80        90       100       110       120

              130       140       150       160       170       180
pF1KSD ATWKEYPKPLQVNITLSWSKTIELTDNIVITFESGRPDQMILEKSLDYGRTWQPYQYYAT
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS30 ATWKEYPKPLQVNITLSWSKTIELTDNIVITFESGRPDQMILEKSLDYGRTWQPYQYYAT
              130       140       150       160       170       180

              190       200       210       220       230       240
pF1KSD DCLDAFHMDPKSVKDLSQHTVLEIICTEEYSTGYTTNSKIIHFEIKDRFAFFAGPRLRNM
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS30 DCLDAFHMDPKSVKDLSQHTVLEIICTEEYSTGYTTNSKIIHFEIKDRFAFFAGPRLRNM
              190       200       210       220       230       240

              250       260       270       280       290       300
pF1KSD ASLYGQLDTTKKLRDFFTVTDLRIRLLRPAVGEIFVDELHLARYFYAISDIKVRGRCKCN
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS30 ASLYGQLDTTKKLRDFFTVTDLRIRLLRPAVGEIFVDELHLARYFYAISDIKVRGRCKCN
              250       260       270       280       290       300

              310       320       330       340       350       360
pF1KSD LHATVCVYDNSKLTCECEHNTTGPDCGKCKKNYQGRPWSPGSYLPIPKGTANTCIPSISS
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS30 LHATVCVYDNSKLTCECEHNTTGPDCGKCKKNYQGRPWSPGSYLPIPKGTANTCIPSISS
              310       320       330       340       350       360

                                                                   
pF1KSD IGSK                                                        
       ::.                                                         
CCDS30 IGTNVCDNELLHCQNGGTCHNNVRCLCPAAYTGILCEKLRCEEAGSCGSDSGQGAPPHGS
              370       380       390       400       410       420

>>CCDS81354.1 NTNG1 gene_id:22854|Hs108|chr1              (460 aa)
 initn: 2586 init1: 2560 opt: 2560  Z-score: 2827.7  bits: 532.1 E(32554): 3.5e-151
Smith-Waterman score: 2560; 99.7% identity (100.0% similar) in 363 aa overlap (1-363:1-363)

               10        20        30        40        50        60
pF1KSD MYLSRFLSIHALWVTVSSVMQPYPLVWGHYDLCKTQIYTEEGKVWDYMACQPESTDMTKY
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS81 MYLSRFLSIHALWVTVSSVMQPYPLVWGHYDLCKTQIYTEEGKVWDYMACQPESTDMTKY
               10        20        30        40        50        60

               70        80        90       100       110       120
pF1KSD LKVKLDPPDITCGDPPETFCAMGNPYMCNNECDASTPELAHPPELMFDFEGRHPSTFWQS
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS81 LKVKLDPPDITCGDPPETFCAMGNPYMCNNECDASTPELAHPPELMFDFEGRHPSTFWQS
               70        80        90       100       110       120

              130       140       150       160       170       180
pF1KSD ATWKEYPKPLQVNITLSWSKTIELTDNIVITFESGRPDQMILEKSLDYGRTWQPYQYYAT
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS81 ATWKEYPKPLQVNITLSWSKTIELTDNIVITFESGRPDQMILEKSLDYGRTWQPYQYYAT
              130       140       150       160       170       180

              190       200       210       220       230       240
pF1KSD DCLDAFHMDPKSVKDLSQHTVLEIICTEEYSTGYTTNSKIIHFEIKDRFAFFAGPRLRNM
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS81 DCLDAFHMDPKSVKDLSQHTVLEIICTEEYSTGYTTNSKIIHFEIKDRFAFFAGPRLRNM
              190       200       210       220       230       240

              250       260       270       280       290       300
pF1KSD ASLYGQLDTTKKLRDFFTVTDLRIRLLRPAVGEIFVDELHLARYFYAISDIKVRGRCKCN
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS81 ASLYGQLDTTKKLRDFFTVTDLRIRLLRPAVGEIFVDELHLARYFYAISDIKVRGRCKCN
              250       260       270       280       290       300

              310       320       330       340       350       360
pF1KSD LHATVCVYDNSKLTCECEHNTTGPDCGKCKKNYQGRPWSPGSYLPIPKGTANTCIPSISS
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS81 LHATVCVYDNSKLTCECEHNTTGPDCGKCKKNYQGRPWSPGSYLPIPKGTANTCIPSISS
              310       320       330       340       350       360

                                                                   
pF1KSD IGSK                                                        
       ::.                                                         
CCDS81 IGNPPKFNRIWPNISSLEVSNPKQANVCDNELLHCQNGGTCHNNVRCLCPAAYTGILCEK
              370       380       390       400       410       420

>>CCDS44179.1 NTNG1 gene_id:22854|Hs108|chr1              (480 aa)
 initn: 2586 init1: 2560 opt: 2560  Z-score: 2827.4  bits: 532.2 E(32554): 3.6e-151
Smith-Waterman score: 2560; 99.7% identity (100.0% similar) in 363 aa overlap (1-363:1-363)

               10        20        30        40        50        60
pF1KSD MYLSRFLSIHALWVTVSSVMQPYPLVWGHYDLCKTQIYTEEGKVWDYMACQPESTDMTKY
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS44 MYLSRFLSIHALWVTVSSVMQPYPLVWGHYDLCKTQIYTEEGKVWDYMACQPESTDMTKY
               10        20        30        40        50        60

               70        80        90       100       110       120
pF1KSD LKVKLDPPDITCGDPPETFCAMGNPYMCNNECDASTPELAHPPELMFDFEGRHPSTFWQS
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS44 LKVKLDPPDITCGDPPETFCAMGNPYMCNNECDASTPELAHPPELMFDFEGRHPSTFWQS
               70        80        90       100       110       120

              130       140       150       160       170       180
pF1KSD ATWKEYPKPLQVNITLSWSKTIELTDNIVITFESGRPDQMILEKSLDYGRTWQPYQYYAT
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS44 ATWKEYPKPLQVNITLSWSKTIELTDNIVITFESGRPDQMILEKSLDYGRTWQPYQYYAT
              130       140       150       160       170       180

              190       200       210       220       230       240
pF1KSD DCLDAFHMDPKSVKDLSQHTVLEIICTEEYSTGYTTNSKIIHFEIKDRFAFFAGPRLRNM
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS44 DCLDAFHMDPKSVKDLSQHTVLEIICTEEYSTGYTTNSKIIHFEIKDRFAFFAGPRLRNM
              190       200       210       220       230       240

              250       260       270       280       290       300
pF1KSD ASLYGQLDTTKKLRDFFTVTDLRIRLLRPAVGEIFVDELHLARYFYAISDIKVRGRCKCN
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS44 ASLYGQLDTTKKLRDFFTVTDLRIRLLRPAVGEIFVDELHLARYFYAISDIKVRGRCKCN
              250       260       270       280       290       300

              310       320       330       340       350       360
pF1KSD LHATVCVYDNSKLTCECEHNTTGPDCGKCKKNYQGRPWSPGSYLPIPKGTANTCIPSISS
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS44 LHATVCVYDNSKLTCECEHNTTGPDCGKCKKNYQGRPWSPGSYLPIPKGTANTCIPSISS
              310       320       330       340       350       360

                                                                   
pF1KSD IGSK                                                        
       ::.                                                         
CCDS44 IGNPPKFNRIWPNISSLEVSNPKQVAPKLALSTVSSVQVANHKRANVCDNELLHCQNGGT
              370       380       390       400       410       420

>>CCDS44180.1 NTNG1 gene_id:22854|Hs108|chr1              (539 aa)
 initn: 2560 init1: 2560 opt: 2560  Z-score: 2826.6  bits: 532.2 E(32554): 4e-151
Smith-Waterman score: 2560; 99.7% identity (100.0% similar) in 363 aa overlap (1-363:1-363)

               10        20        30        40        50        60
pF1KSD MYLSRFLSIHALWVTVSSVMQPYPLVWGHYDLCKTQIYTEEGKVWDYMACQPESTDMTKY
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS44 MYLSRFLSIHALWVTVSSVMQPYPLVWGHYDLCKTQIYTEEGKVWDYMACQPESTDMTKY
               10        20        30        40        50        60

               70        80        90       100       110       120
pF1KSD LKVKLDPPDITCGDPPETFCAMGNPYMCNNECDASTPELAHPPELMFDFEGRHPSTFWQS
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS44 LKVKLDPPDITCGDPPETFCAMGNPYMCNNECDASTPELAHPPELMFDFEGRHPSTFWQS
               70        80        90       100       110       120

              130       140       150       160       170       180
pF1KSD ATWKEYPKPLQVNITLSWSKTIELTDNIVITFESGRPDQMILEKSLDYGRTWQPYQYYAT
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS44 ATWKEYPKPLQVNITLSWSKTIELTDNIVITFESGRPDQMILEKSLDYGRTWQPYQYYAT
              130       140       150       160       170       180

              190       200       210       220       230       240
pF1KSD DCLDAFHMDPKSVKDLSQHTVLEIICTEEYSTGYTTNSKIIHFEIKDRFAFFAGPRLRNM
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS44 DCLDAFHMDPKSVKDLSQHTVLEIICTEEYSTGYTTNSKIIHFEIKDRFAFFAGPRLRNM
              190       200       210       220       230       240

              250       260       270       280       290       300
pF1KSD ASLYGQLDTTKKLRDFFTVTDLRIRLLRPAVGEIFVDELHLARYFYAISDIKVRGRCKCN
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS44 ASLYGQLDTTKKLRDFFTVTDLRIRLLRPAVGEIFVDELHLARYFYAISDIKVRGRCKCN
              250       260       270       280       290       300

              310       320       330       340       350       360
pF1KSD LHATVCVYDNSKLTCECEHNTTGPDCGKCKKNYQGRPWSPGSYLPIPKGTANTCIPSISS
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS44 LHATVCVYDNSKLTCECEHNTTGPDCGKCKKNYQGRPWSPGSYLPIPKGTANTCIPSISS
              310       320       330       340       350       360

                                                                   
pF1KSD IGSK                                                        
       ::.                                                         
CCDS44 IGNCECFGHSNRCSYIDLLNTVICVSCKHNTRGQHCELCRLGYFRNASAQLDDENVCIEC
              370       380       390       400       410       420

>>CCDS6946.1 NTNG2 gene_id:84628|Hs108|chr9               (530 aa)
 initn: 1486 init1: 871 opt: 1492  Z-score: 1648.9  bits: 314.2 E(32554): 1.6e-85
Smith-Waterman score: 1492; 57.5% identity (83.6% similar) in 341 aa overlap (24-363:13-352)

               10        20        30        40        50        60
pF1KSD MYLSRFLSIHALWVTVSSVMQPYPLVWGHYDLCKTQIYTEEGKVWDYMACQPESTDMTKY
                              ::. : ::.::. . :.:: .:...::::.   .  :
CCDS69            MLHLLALFLHCLPLASGDYDICKSWVTTDEGPTWEFYACQPKVMRLKDY
                          10        20        30        40         

               70        80        90       100       110       120
pF1KSD LKVKLDPPDITCGDPPETFCAMGNPYMCNNECDASTPELAHPPELMFDFEGRHPSTFWQS
       .:::..:  :::::::: ::.  :::.:.::::::.:.:::::.:::: : .  .:.:::
CCDS69 VKVKVEPSGITCGDPPERFCSHENPYLCSNECDASNPDLAHPPRLMFDKEEEGLATYWQS
      50        60        70        80        90       100         

              130       140       150       160       170       180
pF1KSD ATWKEYPKPLQVNITLSWSKTIELTDNIVITFESGRPDQMILEKSLDYGRTWQPYQYYAT
        ::..::.::..::::::.::.::::..:.::: :::  :.:::::: ::::::::.:: 
CCDS69 ITWSRYPSPLEANITLSWNKTVELTDDVVMTFEYGRPTVMVLEKSLDNGRTWQPYQFYAE
     110       120       130       140       150       160         

              190       200       210        220       230         
pF1KSD DCLDAFHMDPKSVKDLSQHTVLEIICTEEYST-GYTTNSKIIHFEIKDRFAFFAGPRLRN
       ::..:: :. . ..:.:. .. ...::::::  . . . : ..::..::::.:::: :::
CCDS69 DCMEAFGMSARRARDMSSSSAHRVLCTEEYSRWAGSKKEKHVRFEVRDRFAIFAGPDLRN
     170       180       190       200       210       220         

     240       250       260       270       280       290         
pF1KSD MASLYGQLDTTKKLRDFFTVTDLRIRLLRPAVGEIFVDELHLARYFYAISDIKVRGRCKC
       : .:: .:...: :..:::.::::.::::::.:  .:.. .: .::::::.:.: :::::
CCDS69 MDNLYTRLESAKGLKEFFTLTDLRMRLLRPALGGTYVQRENLYKYFYAISNIEVIGRCKC
     230       240       250       260       270       280         

     300       310       320       330       340       350         
pF1KSD NLHATVCVYDNSKLTCECEHNTTGPDCGKCKKNYQGRPWSPGSYLPIPKGTANTCIPSIS
       ::::..: . ...: ::::::::::::::::::.. : :  :::::.:.:. :.:  . .
CCDS69 NLHANLCSMREGSLQCECEHNTTGPDCGKCKKNFRTRSWRAGSYLPLPHGSPNACA-TAG
     290       300       310       320       330       340         

     360                                                           
pF1KSD SIGSK                                                       
       :.:.                                                        
CCDS69 SFGNCECYGHSNRCSYIDFLNVVTCVSCKHNTRGQHCQHCRLGYYRNGSAELDDENVCIE
      350       360       370       380       390       400        

>>CCDS32787.1 LAMA1 gene_id:284217|Hs108|chr18            (3075 aa)
 initn: 195 init1: 149 opt: 432  Z-score: 468.2  bits: 98.3 E(32554): 9.3e-20
Smith-Waterman score: 432; 31.8% identity (57.8% similar) in 308 aa overlap (69-354:38-324)

       40        50        60        70         80                 
pF1KSD TEEGKVWDYMACQPESTDMTKYLKVKLDPPDITCGDP-PETFCAM-----GNPY---MCN
                                     . :::.  :: :: .     : :    .: 
CCDS32 VLLLCVAAQCRQRGLFPAILNLASNAHISTNATCGEKGPEMFCKLVEHVPGRPVRNPQCR
        10        20        30        40        50        60       

      90         100       110       120       130       140       
pF1KSD NECDAST--PELAHPPELMFDFEGRHPSTFWQSATWKEYPKPLQVNITLSWSKTIELTDN
         ::...  :.  ::    .:  :   ...::: . ..  .   :.:::.  ......  
CCDS32 I-CDGNSANPRERHPISHAID--GT--NNWWQSPSIQNGREYHWVTITLDLRQVFQVAYV
         70        80            90       100       110       120  

       150       160       170          180       190       200    
pF1KSD IVITFESGRPDQMILEKSLDYGRTWQPYQYYA---TDCLDAFHMDPKSVKDLSQHTVLEI
       :. . .. :: . :::.::: : :..:.::::   ..::. ... :.     . ..  :.
CCDS32 IIKAANAPRPGNWILERSLD-GTTFSPWQYYAVSDSECLSRYNITPRRGPP-TYRADDEV
            130       140        150       160       170        180

          210       220         230       240          250         
pF1KSD ICTEEYSTGYTTNSKIIHFE-IKDR-FAFFAGPRLRNMAS---LYGQLDTTKKLR-DFFT
       :::  ::     .   ::   :. :  :   .:.: ...:   .  .:.  . :  :..:
CCDS32 ICTSYYSRLVPLEHGEIHTSLINGRPSADDLSPKLLEFTSARYIRLRLQRIRTLNADLMT
              190       200       210       220       230       240

      260       270       280       290       300       310        
pF1KSD VTDLRIRLLRPAVGEIFVDELHLARYFYAISDIKVRGRCKCNLHATVCVYDNS--KLTCE
       ..  . . : : : .         ::.:.:.::.: : : :  ::. : .:..  :: :.
CCDS32 LSHREPKELDPIVTR---------RYYYSIKDISVGGMCICYGHASSCPWDETTKKLQCQ
              250                260       270       280       290 

        320       330       340       350       360                
pF1KSD CEHNTTGPDCGKCKKNYQGRPWSPGSYLPIPKGTANTCIPSISSIGSK            
       ::::: : .:..:  .:. .:: ::.   . .:  :::                      
CCDS32 CEHNTCGESCNRCCPGYHQQPWRPGT---VSSG--NTCEACNCHNKAKDCYYDESVAKQK
             300       310          320         330       340      

CCDS32 KSLNTAGQFRGGGVCINCLQNTMGINCETCIDGYYRPHKVSPYEDEPCRPCNCDPVGSLS
        350       360       370       380       390       400      

>>CCDS33502.1 LAMA5 gene_id:3911|Hs108|chr20              (3695 aa)
 initn: 299 init1: 160 opt: 431  Z-score: 465.8  bits: 98.1 E(32554): 1.3e-19
Smith-Waterman score: 471; 29.2% identity (55.5% similar) in 346 aa overlap (28-354:41-356)

                  10        20        30        40         50      
pF1KSD    MYLSRFLSIHALWVTVSSVMQPYPLVWGHYDLCKTQIYTEEG-KVWDYMACQPE---
                                     : ..:    .   :: ..    .:  :   
CCDS33 LCVRGPRGPAPLLLVGLALLGAARAREEAGGGFSLHPPYFNLAEGARIAASATCGEEAPA
               20        30        40        50        60        70

              60        70        80        90       100       110 
pF1KSD --STDMTKYLKVKLDPPDITCGDPPETFCAMGNPYMCNNECDASTPELAHPPELMFDFEG
         :   :. :  ::    .. ::: .:. ..    .:.  : :.. . :::    .:   
CCDS33 RGSPRPTEDLYCKLVGGPVAGGDPNQTIRGQ----YCDI-CTAANSNKAHPASNAIDGTE
               80        90       100            110       120     

             120       130       140       150       160       170 
pF1KSD RHPSTFWQSATWKEYPKPLQVNITLSWSKTIELTDNIVITFESGRPDQMILEKSLDYGRT
       :    .:::   ..  .  .::.::. .......  ..   .: :::  .::.:.:.:::
CCDS33 R----WWQSPPLSRGLEYNEVNVTLDLGQVFHVAYVLIKFANSPRPDLWVLERSMDFGRT
             130       140       150       160       170       180 

             180          190       200       210       220        
pF1KSD WQPYQYYAT---DCLDAFHMDPKSVKDLSQHTVLEIICTEEYSTGYTTNSKIIHFEIKDR
       .::.:..:.   :::. :   :.... ...  .   ::: :::       .:. .:  . 
CCDS33 YQPWQFFASSKRDCLERF--GPQTLERITRDDA--AICTTEYS-------RIVPLENGEI
             190         200       210         220              230

      230       240       250       260       270             280  
pF1KSD FAFFAGPRLRNMASLYGQLDTTKKLRDFFTVTDLRIRLLRPA------VGEIFVDELHLA
        . ... :   :   :. :     ::.:  .:..:.:.::        .:. . :     
CCDS33 VVSLVNGRPGAMNFSYSPL-----LREFTKATNVRLRFLRTNTLLGHLMGKALRDPTVTR
              240            250       260       270       280     

            290       300           310       320       330        
pF1KSD RYFYAISDIKVRGRCKCNLHATVC----VYDNSKLTCECEHNTTGPDCGKCKKNYQGRPW
       ::.:.:.::.. ::: :. :: .:      :  .: : :.::: :  : .:  ... .::
CCDS33 RYYYSIKDISIGGRCVCHGHADACDAKDPTDPFRLQCTCQHNTCGGTCDRCCPGFNQQPW
         290       300       310       320       330       340     

      340       350       360                                      
pF1KSD SPGSYLPIPKGTANTCIPSISSIGSK                                  
       .:..      ..:: :                                            
CCDS33 KPAT-----ANSANECQSCNCYGHATDCYYDPEVDRRRASQSLDGTYQGGGVCIDCQHHT
              350       360       370       380       390       400

>>CCDS5138.1 LAMA2 gene_id:3908|Hs108|chr6                (3122 aa)
 initn: 272 init1: 140 opt: 425  Z-score: 460.3  bits: 96.9 E(32554): 2.5e-19
Smith-Waterman score: 425; 29.6% identity (55.6% similar) in 304 aa overlap (69-354:55-346)

       40        50        60        70         80             90  
pF1KSD TEEGKVWDYMACQPESTDMTKYLKVKLDPPDITCGDP-PETFCAM-----GNPYMCNNEC
                                     . :::.  :: .: .     :.:   : .:
CCDS51 PQQQRQSQAHQQRGLFPAVLNLASNALITTNATCGEKGPEMYCKLVEHVPGQPVR-NPQC
           30        40        50        60        70         80   

                 100       110       120       130       140       
pF1KSD -----DASTPELAHPPELMFDFEGRHPSTFWQSATWKEYPKPLQVNITLSWSKTIELTDN
            ..:.:.  ::    .:  :.  .:.::: . :.  .   :.:::. .......  
CCDS51 RICNQNSSNPNQRHPITNAID--GK--NTWWQSPSIKNGIEYHYVTITLDLQQVFQIAYV
            90       100           110       120       130         

       150       160       170          180       190       200    
pF1KSD IVITFESGRPDQMILEKSLDYGRTWQPYQYYA---TDCLDAFHMDPKSVKDLSQHTVLEI
       :: . .: :: . :::.:::    ..:.::.:   :.::  ... :..    :     :.
CCDS51 IVKAANSPRPGNWILERSLD-DVEYKPWQYHAVTDTECLTLYNIYPRTGPP-SYAKDDEV
     140       150        160       170       180        190       

          210       220       230       240       250        260   
pF1KSD ICTEEYSTGYTTNSKIIHFEIKDRFAFFAGPRLRNMASLYGQLDTTKKLR-DFFTVTDLR
       :::  ::  .  ..  ::. . .     . :   . .    .. ... .:  :  .  : 
CCDS51 ICTSFYSKIHPLENGEIHISLIN-----GRPSADDPSPELLEFTSARYIRLRFQRIRTLN
       200       210       220            230       240       250  

           270        280       290       300         310       320
pF1KSD IRLLRPAVGEIF-VDELHLARYFYAISDIKVRGRCKCNLHATVCVYD--NSKLTCECEHN
         :.  :  .   .: .   ::.:...::.: : : :  :: .:  :  ..:  ::::::
CCDS51 ADLMMFAHKDPREIDPIVTRRYYYSVKDISVGGMCICYGHARACPLDPATNKSRCECEHN
            260       270       280       290       300       310  

              330       340       350       360                    
pF1KSD TTGPDCGKCKKNYQGRPWSPGSYLPIPKGTANTCIPSISSIGSK                
       : : .: .:  ... .::  :..:   .  : .:                          
CCDS51 TCGDSCDQCCPGFHQKPWRAGTFLTKTECEACNCHGKAEECYYDENVARRNLSLNIRGKY
            320       330       340       350       360       370  

CCDS51 IGGGVCINCTQNTAGINCETCTDGFFRPKGVSPNYPRPCQPCHCDPIGSLNEVCVKDEKH
            380       390       400       410       420       430  

>>CCDS45838.1 LAMA3 gene_id:3909|Hs108|chr18              (3277 aa)
 initn: 303 init1: 146 opt: 402  Z-score: 434.6  bits: 92.2 E(32554): 6.9e-18
Smith-Waterman score: 427; 29.5% identity (55.2% similar) in 308 aa overlap (73-354:74-358)

             50        60        70         80                     
pF1KSD KVWDYMACQPESTDMTKYLKVKLDPPDITCGDP-PETFCAM-GNP-----------YMCN
                                     : : :: .: . :.:            .:.
CCDS45 GLSLHPTYFNLAEAARIWATATCGERGPGEGRPQPELYCKLVGGPTAPGSGHTIQGQFCD
            50        60        70        80        90       100   

      90       100       110       120       130       140         
pF1KSD NECDASTPELAHPPELMFDFEGRHPSTFWQSATWKEYPKPLQVNITLSWSKTIELTDNIV
         :..  :. :::    .:   :    .:::   .   .  .::.::. .. ....  :.
CCDS45 Y-CNSEDPRKAHPVTNAIDGSER----WWQSPPLSSGTQYNRVNLTLDLGQLFHVA-YIL
            110       120           130       140       150        

     150        160       170          180       190       200     
pF1KSD ITF-ESGRPDQMILEKSLDYGRTWQPYQYYA---TDCLDAFHMDPKSVKDLSQHTVLEII
       : : .: :::  .::.:.:.: :..:.::.:   .:::  :  .     ...     ...
CCDS45 IKFANSPRPDLWVLERSVDFGSTYSPWQYFAHSKVDCLKEFGREA----NMAVTRDDDVL
       160       170       180       190       200           210   

         210        220       230       240       250       260    
pF1KSD CTEEYSTGYTT-NSKIIHFEIKDRFAFFAGPRLRNMASLYGQLDTTKKLRDFFTVTDLRI
       :. :::      :....   :. :      :  .:..        .. ::.:  .:..:.
CCDS45 CVTEYSRIVPLENGEVVVSLINGR------PGAKNFT-------FSHTLREFTKATNIRL
           220       230             240              250       260

          270             280       290       300       310        
pF1KSD RLLRPA--VGEIFV----DELHLARYFYAISDIKVRGRCKCNLHATVCVYDNSK--LTCE
       :.::    .:...     :     ::.:.:.::.. :.: :: :: ::  .: .  . ::
CCDS45 RFLRTNTLLGHLISKAQRDPTVTRRYYYSIKDISIGGQCVCNGHAEVCNINNPEKLFRCE
              270       280       290       300       310       320

        320       330       340       350       360                
pF1KSD CEHNTTGPDCGKCKKNYQGRPWSPGSYLPIPKGTANTCIPSISSIGSK            
       :.:.: :  : .:  .:. : : :...    .  : .:                      
CCDS45 CQHHTCGETCDRCCTGYNQRRWRPAAWEQSHECEACNCHGHASNCYYDPDVERQQASLNT
              330       340       350       360       370       380

CCDS45 QGIYAGGGVCINCQHNTAGVNCEQCAKGYYRPYGVPVDAPDGCIPCSCDPEHADGCEQGS
              390       400       410       420       430       440

>>CCDS42419.1 LAMA3 gene_id:3909|Hs108|chr18              (3333 aa)
 initn: 303 init1: 146 opt: 402  Z-score: 434.5  bits: 92.2 E(32554): 7e-18
Smith-Waterman score: 427; 29.5% identity (55.2% similar) in 308 aa overlap (73-354:74-358)

             50        60        70         80                     
pF1KSD KVWDYMACQPESTDMTKYLKVKLDPPDITCGDP-PETFCAM-GNP-----------YMCN
                                     : : :: .: . :.:            .:.
CCDS42 GLSLHPTYFNLAEAARIWATATCGERGPGEGRPQPELYCKLVGGPTAPGSGHTIQGQFCD
            50        60        70        80        90       100   

      90       100       110       120       130       140         
pF1KSD NECDASTPELAHPPELMFDFEGRHPSTFWQSATWKEYPKPLQVNITLSWSKTIELTDNIV
         :..  :. :::    .:   :    .:::   .   .  .::.::. .. ....  :.
CCDS42 Y-CNSEDPRKAHPVTNAIDGSER----WWQSPPLSSGTQYNRVNLTLDLGQLFHVA-YIL
            110       120           130       140       150        

     150        160       170          180       190       200     
pF1KSD ITF-ESGRPDQMILEKSLDYGRTWQPYQYYA---TDCLDAFHMDPKSVKDLSQHTVLEII
       : : .: :::  .::.:.:.: :..:.::.:   .:::  :  .     ...     ...
CCDS42 IKFANSPRPDLWVLERSVDFGSTYSPWQYFAHSKVDCLKEFGREA----NMAVTRDDDVL
       160       170       180       190       200           210   

         210        220       230       240       250       260    
pF1KSD CTEEYSTGYTT-NSKIIHFEIKDRFAFFAGPRLRNMASLYGQLDTTKKLRDFFTVTDLRI
       :. :::      :....   :. :      :  .:..        .. ::.:  .:..:.
CCDS42 CVTEYSRIVPLENGEVVVSLINGR------PGAKNFT-------FSHTLREFTKATNIRL
           220       230             240              250       260

          270             280       290       300       310        
pF1KSD RLLRPA--VGEIFV----DELHLARYFYAISDIKVRGRCKCNLHATVCVYDNSK--LTCE
       :.::    .:...     :     ::.:.:.::.. :.: :: :: ::  .: .  . ::
CCDS42 RFLRTNTLLGHLISKAQRDPTVTRRYYYSIKDISIGGQCVCNGHAEVCNINNPEKLFRCE
              270       280       290       300       310       320

        320       330       340       350       360                
pF1KSD CEHNTTGPDCGKCKKNYQGRPWSPGSYLPIPKGTANTCIPSISSIGSK            
       :.:.: :  : .:  .:. : : :...    .  : .:                      
CCDS42 CQHHTCGETCDRCCTGYNQRRWRPAAWEQSHECEACNCHGHASNCYYDPDVERQQASLNT
              330       340       350       360       370       380

CCDS42 QGIYAGGGVCINCQHNTAGVNCEQCAKGYYRPYGVPVDAPDGCIPCSCDPEHADGCEQGS
              390       400       410       420       430       440




364 residues in 1 query   sequences
18511270 residues in 32554 library sequences
 Tcomplib [36.3.4 Apr, 2011] (8 proc)
 start: Thu Nov  3 04:30:20 2016 done: Thu Nov  3 04:30:21 2016
 Total Scan time:  1.930 Total Display time:  0.030

Function used was FASTA [36.3.4 Apr, 2011]
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