Result of FASTA (omim) for
pF1KSDA0871
FASTA searches a protein or DNA sequence data bank 36.3.4 Apr, 2011
Please cite:
W.R. Pearson & D.J. Lipman PNAS (1988) 85:2444-2448
Query: pF1KSDA0871, 469 aa
1>>>pF1KSDA0871 469 - 469 aa - 469 aa
Library: /omim/omim.rfq.tfa
60827320 residues in 85289 sequences
Statistics: Expectation_n fit: rho(ln(x))= 9.3878+/-0.000596; mu= -0.4359+/- 0.037
mean_var=338.0438+/-70.453, 0's: 0 Z-trim(115.1): 53 B-trim: 336 in 1/57
Lambda= 0.069757
statistics sampled from 25226 (25274) to 25226 sequences
Algorithm: FASTA (3.7 Nov 2010) [optimized]
Parameters: BL50 matrix (15:-5), open/ext: -10/-2
ktup: 2, E-join: 1 (0.646), E-opt: 0.2 (0.296), width: 16
Scan time: 8.270
The best scores are: opt bits E(85289)
NP_055776 (OMIM: 611194) protein RUFY3 isoform 2 [ ( 469) 2996 316.1 1.3e-85
NP_001032519 (OMIM: 611194) protein RUFY3 isoform ( 620) 2846 301.1 5.6e-81
NP_001332769 (OMIM: 611194) protein RUFY3 isoform ( 416) 2593 275.5 2e-73
NP_001278923 (OMIM: 611194) protein RUFY3 isoform ( 487) 2593 275.5 2.2e-73
XP_011530057 (OMIM: 611194) PREDICTED: protein RUF ( 529) 2579 274.2 6.2e-73
XP_016863381 (OMIM: 611194) PREDICTED: protein RUF ( 405) 2549 271.0 4.2e-72
NP_001278922 (OMIM: 611194) protein RUFY3 isoform ( 567) 2443 260.5 8.5e-69
XP_005265713 (OMIM: 611194) PREDICTED: protein RUF ( 638) 2443 260.6 9.2e-69
XP_011530058 (OMIM: 611194) PREDICTED: protein RUF ( 518) 2434 259.6 1.5e-68
NP_001124181 (OMIM: 611194) protein RUFY3 isoform ( 506) 2429 259.1 2.1e-68
XP_011530056 (OMIM: 611194) PREDICTED: protein RUF ( 586) 2429 259.1 2.3e-68
XP_016863379 (OMIM: 611194) PREDICTED: protein RUF ( 587) 2429 259.1 2.3e-68
XP_011530054 (OMIM: 611194) PREDICTED: protein RUF ( 621) 2429 259.2 2.4e-68
XP_011530055 (OMIM: 611194) PREDICTED: protein RUF ( 621) 2429 259.2 2.4e-68
XP_011530053 (OMIM: 611194) PREDICTED: protein RUF ( 657) 2429 259.2 2.5e-68
XP_011530052 (OMIM: 611194) PREDICTED: protein RUF ( 680) 2429 259.2 2.6e-68
XP_005265715 (OMIM: 611194) PREDICTED: protein RUF ( 556) 2399 256.1 1.8e-67
XP_005270013 (OMIM: 610328) PREDICTED: RUN and FYV ( 585) 1321 147.6 8.5e-35
XP_016865380 (OMIM: 610327) PREDICTED: RUN and FYV ( 578) 1298 145.3 4.2e-34
XP_006714984 (OMIM: 610327) PREDICTED: RUN and FYV ( 686) 1298 145.4 4.7e-34
NP_001317032 (OMIM: 610328) RUN and FYVE domain-co ( 606) 1286 144.1 1e-33
XP_011538244 (OMIM: 610328) PREDICTED: RUN and FYV ( 606) 1286 144.1 1e-33
NP_060457 (OMIM: 610328) RUN and FYVE domain-conta ( 641) 1286 144.1 1e-33
NP_001035541 (OMIM: 610327) RUN and FYVE domain-co ( 600) 1276 143.1 2e-33
NP_001035542 (OMIM: 610327) RUN and FYVE domain-co ( 600) 1276 143.1 2e-33
NP_079434 (OMIM: 610327) RUN and FYVE domain-conta ( 708) 1276 143.2 2.2e-33
XP_005270012 (OMIM: 610328) PREDICTED: RUN and FYV ( 590) 1247 140.2 1.5e-32
NP_001265154 (OMIM: 610328) RUN and FYVE domain-co ( 379) 994 114.5 5.2e-25
NP_001035882 (OMIM: 610328) RUN and FYVE domain-co ( 403) 656 80.5 9.4e-15
XP_005270014 (OMIM: 610328) PREDICTED: RUN and FYV ( 572) 645 79.6 2.5e-14
XP_005270010 (OMIM: 610328) PREDICTED: RUN and FYV ( 607) 645 79.6 2.6e-14
XP_005266050 (OMIM: 610327) PREDICTED: RUN and FYV ( 465) 604 75.3 3.9e-13
XP_016865382 (OMIM: 610327) PREDICTED: RUN and FYV ( 416) 438 58.6 3.8e-08
XP_016865381 (OMIM: 610327) PREDICTED: RUN and FYV ( 438) 378 52.6 2.6e-06
NP_001138298 (OMIM: 605448) RUN domain-containing ( 400) 376 52.3 2.8e-06
XP_005257021 (OMIM: 605448) PREDICTED: RUN domain- ( 441) 376 52.4 3e-06
XP_016879526 (OMIM: 605448) PREDICTED: RUN domain- ( 469) 376 52.4 3.1e-06
XP_016879529 (OMIM: 605448) PREDICTED: RUN domain- ( 401) 370 51.7 4.3e-06
XP_016879525 (OMIM: 605448) PREDICTED: RUN domain- ( 470) 370 51.8 4.8e-06
XP_016865383 (OMIM: 610327) PREDICTED: RUN and FYV ( 368) 364 51.1 6.2e-06
XP_006714985 (OMIM: 610327) PREDICTED: RUN and FYV ( 368) 364 51.1 6.2e-06
NP_006686 (OMIM: 605448) RUN domain-containing pro ( 405) 361 50.8 8.1e-06
XP_016879528 (OMIM: 605448) PREDICTED: RUN domain- ( 433) 361 50.9 8.5e-06
XP_016879527 (OMIM: 605448) PREDICTED: RUN domain- ( 434) 361 50.9 8.5e-06
NP_001138297 (OMIM: 605448) RUN domain-containing ( 446) 361 50.9 8.7e-06
XP_016879524 (OMIM: 605448) PREDICTED: RUN domain- ( 474) 361 50.9 9e-06
XP_016865384 (OMIM: 610327) PREDICTED: RUN and FYV ( 310) 339 48.5 3.2e-05
>>NP_055776 (OMIM: 611194) protein RUFY3 isoform 2 [Homo (469 aa)
initn: 2996 init1: 2996 opt: 2996 Z-score: 1657.8 bits: 316.1 E(85289): 1.3e-85
Smith-Waterman score: 2996; 100.0% identity (100.0% similar) in 469 aa overlap (1-469:1-469)
10 20 30 40 50 60
pF1KSD MSALTPPTDMPTPTTDKITQAAMETIYLCKFRVSMDGEWLCLRELDDISLTPDPEPTHED
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_055 MSALTPPTDMPTPTTDKITQAAMETIYLCKFRVSMDGEWLCLRELDDISLTPDPEPTHED
10 20 30 40 50 60
70 80 90 100 110 120
pF1KSD PNYLMANERMNLMNMAKLSIKGLIESALNLGRTLDSDYAPLQQFFVVMEHCLKHGLKAKK
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_055 PNYLMANERMNLMNMAKLSIKGLIESALNLGRTLDSDYAPLQQFFVVMEHCLKHGLKAKK
70 80 90 100 110 120
130 140 150 160 170 180
pF1KSD TFLGQNKSFWGPLELVEKLVPEAAEITASVKDLPGLKTPVGRGRAWLRLALMQKKLSEYM
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_055 TFLGQNKSFWGPLELVEKLVPEAAEITASVKDLPGLKTPVGRGRAWLRLALMQKKLSEYM
130 140 150 160 170 180
190 200 210 220 230 240
pF1KSD KALINKKELLSEFYEPNALMMEEEGAIIAGLLVGLNVIDANFCMKGEDLDSQVGVIDFSM
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_055 KALINKKELLSEFYEPNALMMEEEGAIIAGLLVGLNVIDANFCMKGEDLDSQVGVIDFSM
190 200 210 220 230 240
250 260 270 280 290 300
pF1KSD YLKDGNSSKGTEGDGQITAILDQKNYVEELNRHLNATVNNLQAKVDALEKSNTKLTEELA
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_055 YLKDGNSSKGTEGDGQITAILDQKNYVEELNRHLNATVNNLQAKVDALEKSNTKLTEELA
250 260 270 280 290 300
310 320 330 340 350 360
pF1KSD VANNRIITLQEEMERVKEESSYILESNRKGPKQDRTAEGQALSEARKHLKEETQLRLDVE
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_055 VANNRIITLQEEMERVKEESSYILESNRKGPKQDRTAEGQALSEARKHLKEETQLRLDVE
310 320 330 340 350 360
370 380 390 400 410 420
pF1KSD KELEMQISMRQEMELAMKMLEKDVCEKQDALVSLRQQLDDLRALKHELAFKLQSSDLGVK
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_055 KELEMQISMRQEMELAMKMLEKDVCEKQDALVSLRQQLDDLRALKHELAFKLQSSDLGVK
370 380 390 400 410 420
430 440 450 460
pF1KSD QKSELNSRLEEKTNQMAATIKQLEQSEKDLVKQAKTLNSAANKLIPKHH
:::::::::::::::::::::::::::::::::::::::::::::::::
NP_055 QKSELNSRLEEKTNQMAATIKQLEQSEKDLVKQAKTLNSAANKLIPKHH
430 440 450 460
>>NP_001032519 (OMIM: 611194) protein RUFY3 isoform 1 [H (620 aa)
initn: 2846 init1: 2846 opt: 2846 Z-score: 1574.8 bits: 301.1 E(85289): 5.6e-81
Smith-Waterman score: 2846; 100.0% identity (100.0% similar) in 445 aa overlap (1-445:1-445)
10 20 30 40 50 60
pF1KSD MSALTPPTDMPTPTTDKITQAAMETIYLCKFRVSMDGEWLCLRELDDISLTPDPEPTHED
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 MSALTPPTDMPTPTTDKITQAAMETIYLCKFRVSMDGEWLCLRELDDISLTPDPEPTHED
10 20 30 40 50 60
70 80 90 100 110 120
pF1KSD PNYLMANERMNLMNMAKLSIKGLIESALNLGRTLDSDYAPLQQFFVVMEHCLKHGLKAKK
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 PNYLMANERMNLMNMAKLSIKGLIESALNLGRTLDSDYAPLQQFFVVMEHCLKHGLKAKK
70 80 90 100 110 120
130 140 150 160 170 180
pF1KSD TFLGQNKSFWGPLELVEKLVPEAAEITASVKDLPGLKTPVGRGRAWLRLALMQKKLSEYM
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 TFLGQNKSFWGPLELVEKLVPEAAEITASVKDLPGLKTPVGRGRAWLRLALMQKKLSEYM
130 140 150 160 170 180
190 200 210 220 230 240
pF1KSD KALINKKELLSEFYEPNALMMEEEGAIIAGLLVGLNVIDANFCMKGEDLDSQVGVIDFSM
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 KALINKKELLSEFYEPNALMMEEEGAIIAGLLVGLNVIDANFCMKGEDLDSQVGVIDFSM
190 200 210 220 230 240
250 260 270 280 290 300
pF1KSD YLKDGNSSKGTEGDGQITAILDQKNYVEELNRHLNATVNNLQAKVDALEKSNTKLTEELA
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 YLKDGNSSKGTEGDGQITAILDQKNYVEELNRHLNATVNNLQAKVDALEKSNTKLTEELA
250 260 270 280 290 300
310 320 330 340 350 360
pF1KSD VANNRIITLQEEMERVKEESSYILESNRKGPKQDRTAEGQALSEARKHLKEETQLRLDVE
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 VANNRIITLQEEMERVKEESSYILESNRKGPKQDRTAEGQALSEARKHLKEETQLRLDVE
310 320 330 340 350 360
370 380 390 400 410 420
pF1KSD KELEMQISMRQEMELAMKMLEKDVCEKQDALVSLRQQLDDLRALKHELAFKLQSSDLGVK
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 KELEMQISMRQEMELAMKMLEKDVCEKQDALVSLRQQLDDLRALKHELAFKLQSSDLGVK
370 380 390 400 410 420
430 440 450 460
pF1KSD QKSELNSRLEEKTNQMAATIKQLEQSEKDLVKQAKTLNSAANKLIPKHH
:::::::::::::::::::::::::
NP_001 QKSELNSRLEEKTNQMAATIKQLEQRLRQAERSRQSAELDNRLFKQDFGDKINSLQLEVE
430 440 450 460 470 480
>>NP_001332769 (OMIM: 611194) protein RUFY3 isoform 6 [H (416 aa)
initn: 2593 init1: 2593 opt: 2593 Z-score: 1439.2 bits: 275.5 E(85289): 2e-73
Smith-Waterman score: 2593; 100.0% identity (100.0% similar) in 411 aa overlap (59-469:6-416)
30 40 50 60 70 80
pF1KSD CKFRVSMDGEWLCLRELDDISLTPDPEPTHEDPNYLMANERMNLMNMAKLSIKGLIESAL
::::::::::::::::::::::::::::::
NP_001 MRDDTEDPNYLMANERMNLMNMAKLSIKGLIESAL
10 20 30
90 100 110 120 130 140
pF1KSD NLGRTLDSDYAPLQQFFVVMEHCLKHGLKAKKTFLGQNKSFWGPLELVEKLVPEAAEITA
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 NLGRTLDSDYAPLQQFFVVMEHCLKHGLKAKKTFLGQNKSFWGPLELVEKLVPEAAEITA
40 50 60 70 80 90
150 160 170 180 190 200
pF1KSD SVKDLPGLKTPVGRGRAWLRLALMQKKLSEYMKALINKKELLSEFYEPNALMMEEEGAII
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 SVKDLPGLKTPVGRGRAWLRLALMQKKLSEYMKALINKKELLSEFYEPNALMMEEEGAII
100 110 120 130 140 150
210 220 230 240 250 260
pF1KSD AGLLVGLNVIDANFCMKGEDLDSQVGVIDFSMYLKDGNSSKGTEGDGQITAILDQKNYVE
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 AGLLVGLNVIDANFCMKGEDLDSQVGVIDFSMYLKDGNSSKGTEGDGQITAILDQKNYVE
160 170 180 190 200 210
270 280 290 300 310 320
pF1KSD ELNRHLNATVNNLQAKVDALEKSNTKLTEELAVANNRIITLQEEMERVKEESSYILESNR
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 ELNRHLNATVNNLQAKVDALEKSNTKLTEELAVANNRIITLQEEMERVKEESSYILESNR
220 230 240 250 260 270
330 340 350 360 370 380
pF1KSD KGPKQDRTAEGQALSEARKHLKEETQLRLDVEKELEMQISMRQEMELAMKMLEKDVCEKQ
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 KGPKQDRTAEGQALSEARKHLKEETQLRLDVEKELEMQISMRQEMELAMKMLEKDVCEKQ
280 290 300 310 320 330
390 400 410 420 430 440
pF1KSD DALVSLRQQLDDLRALKHELAFKLQSSDLGVKQKSELNSRLEEKTNQMAATIKQLEQSEK
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 DALVSLRQQLDDLRALKHELAFKLQSSDLGVKQKSELNSRLEEKTNQMAATIKQLEQSEK
340 350 360 370 380 390
450 460
pF1KSD DLVKQAKTLNSAANKLIPKHH
:::::::::::::::::::::
NP_001 DLVKQAKTLNSAANKLIPKHH
400 410
>>NP_001278923 (OMIM: 611194) protein RUFY3 isoform 5 [H (487 aa)
initn: 2593 init1: 2593 opt: 2593 Z-score: 1438.4 bits: 275.5 E(85289): 2.2e-73
Smith-Waterman score: 2950; 96.3% identity (96.3% similar) in 487 aa overlap (1-469:1-487)
10 20 30 40 50 60
pF1KSD MSALTPPTDMPTPTTDKITQAAMETIYLCKFRVSMDGEWLCLRELDDISLTPDPEPTHED
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 MSALTPPTDMPTPTTDKITQAAMETIYLCKFRVSMDGEWLCLRELDDISLTPDPEPTHED
10 20 30 40 50 60
70 80 90 100
pF1KSD ------------------PNYLMANERMNLMNMAKLSIKGLIESALNLGRTLDSDYAPLQ
::::::::::::::::::::::::::::::::::::::::::
NP_001 SWEDLTDLVEQMRDDTEDPNYLMANERMNLMNMAKLSIKGLIESALNLGRTLDSDYAPLQ
70 80 90 100 110 120
110 120 130 140 150 160
pF1KSD QFFVVMEHCLKHGLKAKKTFLGQNKSFWGPLELVEKLVPEAAEITASVKDLPGLKTPVGR
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 QFFVVMEHCLKHGLKAKKTFLGQNKSFWGPLELVEKLVPEAAEITASVKDLPGLKTPVGR
130 140 150 160 170 180
170 180 190 200 210 220
pF1KSD GRAWLRLALMQKKLSEYMKALINKKELLSEFYEPNALMMEEEGAIIAGLLVGLNVIDANF
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 GRAWLRLALMQKKLSEYMKALINKKELLSEFYEPNALMMEEEGAIIAGLLVGLNVIDANF
190 200 210 220 230 240
230 240 250 260 270 280
pF1KSD CMKGEDLDSQVGVIDFSMYLKDGNSSKGTEGDGQITAILDQKNYVEELNRHLNATVNNLQ
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 CMKGEDLDSQVGVIDFSMYLKDGNSSKGTEGDGQITAILDQKNYVEELNRHLNATVNNLQ
250 260 270 280 290 300
290 300 310 320 330 340
pF1KSD AKVDALEKSNTKLTEELAVANNRIITLQEEMERVKEESSYILESNRKGPKQDRTAEGQAL
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 AKVDALEKSNTKLTEELAVANNRIITLQEEMERVKEESSYILESNRKGPKQDRTAEGQAL
310 320 330 340 350 360
350 360 370 380 390 400
pF1KSD SEARKHLKEETQLRLDVEKELEMQISMRQEMELAMKMLEKDVCEKQDALVSLRQQLDDLR
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 SEARKHLKEETQLRLDVEKELEMQISMRQEMELAMKMLEKDVCEKQDALVSLRQQLDDLR
370 380 390 400 410 420
410 420 430 440 450 460
pF1KSD ALKHELAFKLQSSDLGVKQKSELNSRLEEKTNQMAATIKQLEQSEKDLVKQAKTLNSAAN
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 ALKHELAFKLQSSDLGVKQKSELNSRLEEKTNQMAATIKQLEQSEKDLVKQAKTLNSAAN
430 440 450 460 470 480
pF1KSD KLIPKHH
:::::::
NP_001 KLIPKHH
>>XP_011530057 (OMIM: 611194) PREDICTED: protein RUFY3 i (529 aa)
initn: 2579 init1: 2579 opt: 2579 Z-score: 1430.4 bits: 274.2 E(85289): 6.2e-73
Smith-Waterman score: 2579; 100.0% identity (100.0% similar) in 409 aa overlap (61-469:121-529)
40 50 60 70 80 90
pF1KSD FRVSMDGEWLCLRELDDISLTPDPEPTHEDPNYLMANERMNLMNMAKLSIKGLIESALNL
::::::::::::::::::::::::::::::
XP_011 TPPSPGSPLPFLLLSYPSGGGGSSGSGKHHPNYLMANERMNLMNMAKLSIKGLIESALNL
100 110 120 130 140 150
100 110 120 130 140 150
pF1KSD GRTLDSDYAPLQQFFVVMEHCLKHGLKAKKTFLGQNKSFWGPLELVEKLVPEAAEITASV
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_011 GRTLDSDYAPLQQFFVVMEHCLKHGLKAKKTFLGQNKSFWGPLELVEKLVPEAAEITASV
160 170 180 190 200 210
160 170 180 190 200 210
pF1KSD KDLPGLKTPVGRGRAWLRLALMQKKLSEYMKALINKKELLSEFYEPNALMMEEEGAIIAG
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_011 KDLPGLKTPVGRGRAWLRLALMQKKLSEYMKALINKKELLSEFYEPNALMMEEEGAIIAG
220 230 240 250 260 270
220 230 240 250 260 270
pF1KSD LLVGLNVIDANFCMKGEDLDSQVGVIDFSMYLKDGNSSKGTEGDGQITAILDQKNYVEEL
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_011 LLVGLNVIDANFCMKGEDLDSQVGVIDFSMYLKDGNSSKGTEGDGQITAILDQKNYVEEL
280 290 300 310 320 330
280 290 300 310 320 330
pF1KSD NRHLNATVNNLQAKVDALEKSNTKLTEELAVANNRIITLQEEMERVKEESSYILESNRKG
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_011 NRHLNATVNNLQAKVDALEKSNTKLTEELAVANNRIITLQEEMERVKEESSYILESNRKG
340 350 360 370 380 390
340 350 360 370 380 390
pF1KSD PKQDRTAEGQALSEARKHLKEETQLRLDVEKELEMQISMRQEMELAMKMLEKDVCEKQDA
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_011 PKQDRTAEGQALSEARKHLKEETQLRLDVEKELEMQISMRQEMELAMKMLEKDVCEKQDA
400 410 420 430 440 450
400 410 420 430 440 450
pF1KSD LVSLRQQLDDLRALKHELAFKLQSSDLGVKQKSELNSRLEEKTNQMAATIKQLEQSEKDL
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_011 LVSLRQQLDDLRALKHELAFKLQSSDLGVKQKSELNSRLEEKTNQMAATIKQLEQSEKDL
460 470 480 490 500 510
460
pF1KSD VKQAKTLNSAANKLIPKHH
:::::::::::::::::::
XP_011 VKQAKTLNSAANKLIPKHH
520
>>XP_016863381 (OMIM: 611194) PREDICTED: protein RUFY3 i (405 aa)
initn: 2549 init1: 2549 opt: 2549 Z-score: 1415.4 bits: 271.0 E(85289): 4.2e-72
Smith-Waterman score: 2549; 100.0% identity (100.0% similar) in 405 aa overlap (65-469:1-405)
40 50 60 70 80 90
pF1KSD MDGEWLCLRELDDISLTPDPEPTHEDPNYLMANERMNLMNMAKLSIKGLIESALNLGRTL
::::::::::::::::::::::::::::::
XP_016 MANERMNLMNMAKLSIKGLIESALNLGRTL
10 20 30
100 110 120 130 140 150
pF1KSD DSDYAPLQQFFVVMEHCLKHGLKAKKTFLGQNKSFWGPLELVEKLVPEAAEITASVKDLP
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_016 DSDYAPLQQFFVVMEHCLKHGLKAKKTFLGQNKSFWGPLELVEKLVPEAAEITASVKDLP
40 50 60 70 80 90
160 170 180 190 200 210
pF1KSD GLKTPVGRGRAWLRLALMQKKLSEYMKALINKKELLSEFYEPNALMMEEEGAIIAGLLVG
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_016 GLKTPVGRGRAWLRLALMQKKLSEYMKALINKKELLSEFYEPNALMMEEEGAIIAGLLVG
100 110 120 130 140 150
220 230 240 250 260 270
pF1KSD LNVIDANFCMKGEDLDSQVGVIDFSMYLKDGNSSKGTEGDGQITAILDQKNYVEELNRHL
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_016 LNVIDANFCMKGEDLDSQVGVIDFSMYLKDGNSSKGTEGDGQITAILDQKNYVEELNRHL
160 170 180 190 200 210
280 290 300 310 320 330
pF1KSD NATVNNLQAKVDALEKSNTKLTEELAVANNRIITLQEEMERVKEESSYILESNRKGPKQD
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_016 NATVNNLQAKVDALEKSNTKLTEELAVANNRIITLQEEMERVKEESSYILESNRKGPKQD
220 230 240 250 260 270
340 350 360 370 380 390
pF1KSD RTAEGQALSEARKHLKEETQLRLDVEKELEMQISMRQEMELAMKMLEKDVCEKQDALVSL
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_016 RTAEGQALSEARKHLKEETQLRLDVEKELEMQISMRQEMELAMKMLEKDVCEKQDALVSL
280 290 300 310 320 330
400 410 420 430 440 450
pF1KSD RQQLDDLRALKHELAFKLQSSDLGVKQKSELNSRLEEKTNQMAATIKQLEQSEKDLVKQA
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_016 RQQLDDLRALKHELAFKLQSSDLGVKQKSELNSRLEEKTNQMAATIKQLEQSEKDLVKQA
340 350 360 370 380 390
460
pF1KSD KTLNSAANKLIPKHH
:::::::::::::::
XP_016 KTLNSAANKLIPKHH
400
>>NP_001278922 (OMIM: 611194) protein RUFY3 isoform 4 [H (567 aa)
initn: 2443 init1: 2443 opt: 2443 Z-score: 1356.1 bits: 260.5 E(85289): 8.5e-69
Smith-Waterman score: 2443; 100.0% identity (100.0% similar) in 387 aa overlap (59-445:6-392)
30 40 50 60 70 80
pF1KSD CKFRVSMDGEWLCLRELDDISLTPDPEPTHEDPNYLMANERMNLMNMAKLSIKGLIESAL
::::::::::::::::::::::::::::::
NP_001 MRDDTEDPNYLMANERMNLMNMAKLSIKGLIESAL
10 20 30
90 100 110 120 130 140
pF1KSD NLGRTLDSDYAPLQQFFVVMEHCLKHGLKAKKTFLGQNKSFWGPLELVEKLVPEAAEITA
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 NLGRTLDSDYAPLQQFFVVMEHCLKHGLKAKKTFLGQNKSFWGPLELVEKLVPEAAEITA
40 50 60 70 80 90
150 160 170 180 190 200
pF1KSD SVKDLPGLKTPVGRGRAWLRLALMQKKLSEYMKALINKKELLSEFYEPNALMMEEEGAII
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 SVKDLPGLKTPVGRGRAWLRLALMQKKLSEYMKALINKKELLSEFYEPNALMMEEEGAII
100 110 120 130 140 150
210 220 230 240 250 260
pF1KSD AGLLVGLNVIDANFCMKGEDLDSQVGVIDFSMYLKDGNSSKGTEGDGQITAILDQKNYVE
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 AGLLVGLNVIDANFCMKGEDLDSQVGVIDFSMYLKDGNSSKGTEGDGQITAILDQKNYVE
160 170 180 190 200 210
270 280 290 300 310 320
pF1KSD ELNRHLNATVNNLQAKVDALEKSNTKLTEELAVANNRIITLQEEMERVKEESSYILESNR
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 ELNRHLNATVNNLQAKVDALEKSNTKLTEELAVANNRIITLQEEMERVKEESSYILESNR
220 230 240 250 260 270
330 340 350 360 370 380
pF1KSD KGPKQDRTAEGQALSEARKHLKEETQLRLDVEKELEMQISMRQEMELAMKMLEKDVCEKQ
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 KGPKQDRTAEGQALSEARKHLKEETQLRLDVEKELEMQISMRQEMELAMKMLEKDVCEKQ
280 290 300 310 320 330
390 400 410 420 430 440
pF1KSD DALVSLRQQLDDLRALKHELAFKLQSSDLGVKQKSELNSRLEEKTNQMAATIKQLEQSEK
:::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 DALVSLRQQLDDLRALKHELAFKLQSSDLGVKQKSELNSRLEEKTNQMAATIKQLEQRLR
340 350 360 370 380 390
450 460
pF1KSD DLVKQAKTLNSAANKLIPKHH
NP_001 QAERSRQSAELDNRLFKQDFGDKINSLQLEVEELTRQRNQLELELKQEKERRLQNDRSIP
400 410 420 430 440 450
>>XP_005265713 (OMIM: 611194) PREDICTED: protein RUFY3 i (638 aa)
initn: 2443 init1: 2443 opt: 2443 Z-score: 1355.5 bits: 260.6 E(85289): 9.2e-69
Smith-Waterman score: 2800; 96.1% identity (96.1% similar) in 463 aa overlap (1-445:1-463)
10 20 30 40 50 60
pF1KSD MSALTPPTDMPTPTTDKITQAAMETIYLCKFRVSMDGEWLCLRELDDISLTPDPEPTHED
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_005 MSALTPPTDMPTPTTDKITQAAMETIYLCKFRVSMDGEWLCLRELDDISLTPDPEPTHED
10 20 30 40 50 60
70 80 90 100
pF1KSD ------------------PNYLMANERMNLMNMAKLSIKGLIESALNLGRTLDSDYAPLQ
::::::::::::::::::::::::::::::::::::::::::
XP_005 SWEDLTDLVEQMRDDTEDPNYLMANERMNLMNMAKLSIKGLIESALNLGRTLDSDYAPLQ
70 80 90 100 110 120
110 120 130 140 150 160
pF1KSD QFFVVMEHCLKHGLKAKKTFLGQNKSFWGPLELVEKLVPEAAEITASVKDLPGLKTPVGR
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_005 QFFVVMEHCLKHGLKAKKTFLGQNKSFWGPLELVEKLVPEAAEITASVKDLPGLKTPVGR
130 140 150 160 170 180
170 180 190 200 210 220
pF1KSD GRAWLRLALMQKKLSEYMKALINKKELLSEFYEPNALMMEEEGAIIAGLLVGLNVIDANF
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_005 GRAWLRLALMQKKLSEYMKALINKKELLSEFYEPNALMMEEEGAIIAGLLVGLNVIDANF
190 200 210 220 230 240
230 240 250 260 270 280
pF1KSD CMKGEDLDSQVGVIDFSMYLKDGNSSKGTEGDGQITAILDQKNYVEELNRHLNATVNNLQ
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_005 CMKGEDLDSQVGVIDFSMYLKDGNSSKGTEGDGQITAILDQKNYVEELNRHLNATVNNLQ
250 260 270 280 290 300
290 300 310 320 330 340
pF1KSD AKVDALEKSNTKLTEELAVANNRIITLQEEMERVKEESSYILESNRKGPKQDRTAEGQAL
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_005 AKVDALEKSNTKLTEELAVANNRIITLQEEMERVKEESSYILESNRKGPKQDRTAEGQAL
310 320 330 340 350 360
350 360 370 380 390 400
pF1KSD SEARKHLKEETQLRLDVEKELEMQISMRQEMELAMKMLEKDVCEKQDALVSLRQQLDDLR
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_005 SEARKHLKEETQLRLDVEKELEMQISMRQEMELAMKMLEKDVCEKQDALVSLRQQLDDLR
370 380 390 400 410 420
410 420 430 440 450 460
pF1KSD ALKHELAFKLQSSDLGVKQKSELNSRLEEKTNQMAATIKQLEQSEKDLVKQAKTLNSAAN
:::::::::::::::::::::::::::::::::::::::::::
XP_005 ALKHELAFKLQSSDLGVKQKSELNSRLEEKTNQMAATIKQLEQRLRQAERSRQSAELDNR
430 440 450 460 470 480
pF1KSD KLIPKHH
XP_005 LFKQDFGDKINSLQLEVEELTRQRNQLELELKQEKERRLQNDRSIPGRGSQKSESKMDGK
490 500 510 520 530 540
>>XP_011530058 (OMIM: 611194) PREDICTED: protein RUFY3 i (518 aa)
initn: 2434 init1: 2434 opt: 2434 Z-score: 1351.6 bits: 259.6 E(85289): 1.5e-68
Smith-Waterman score: 2434; 97.5% identity (98.0% similar) in 398 aa overlap (61-458:121-518)
40 50 60 70 80 90
pF1KSD FRVSMDGEWLCLRELDDISLTPDPEPTHEDPNYLMANERMNLMNMAKLSIKGLIESALNL
::::::::::::::::::::::::::::::
XP_011 TPPSPGSPLPFLLLSYPSGGGGSSGSGKHHPNYLMANERMNLMNMAKLSIKGLIESALNL
100 110 120 130 140 150
100 110 120 130 140 150
pF1KSD GRTLDSDYAPLQQFFVVMEHCLKHGLKAKKTFLGQNKSFWGPLELVEKLVPEAAEITASV
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_011 GRTLDSDYAPLQQFFVVMEHCLKHGLKAKKTFLGQNKSFWGPLELVEKLVPEAAEITASV
160 170 180 190 200 210
160 170 180 190 200 210
pF1KSD KDLPGLKTPVGRGRAWLRLALMQKKLSEYMKALINKKELLSEFYEPNALMMEEEGAIIAG
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_011 KDLPGLKTPVGRGRAWLRLALMQKKLSEYMKALINKKELLSEFYEPNALMMEEEGAIIAG
220 230 240 250 260 270
220 230 240 250 260 270
pF1KSD LLVGLNVIDANFCMKGEDLDSQVGVIDFSMYLKDGNSSKGTEGDGQITAILDQKNYVEEL
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_011 LLVGLNVIDANFCMKGEDLDSQVGVIDFSMYLKDGNSSKGTEGDGQITAILDQKNYVEEL
280 290 300 310 320 330
280 290 300 310 320 330
pF1KSD NRHLNATVNNLQAKVDALEKSNTKLTEELAVANNRIITLQEEMERVKEESSYILESNRKG
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_011 NRHLNATVNNLQAKVDALEKSNTKLTEELAVANNRIITLQEEMERVKEESSYILESNRKG
340 350 360 370 380 390
340 350 360 370 380 390
pF1KSD PKQDRTAEGQALSEARKHLKEETQLRLDVEKELEMQISMRQEMELAMKMLEKDVCEKQDA
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_011 PKQDRTAEGQALSEARKHLKEETQLRLDVEKELEMQISMRQEMELAMKMLEKDVCEKQDA
400 410 420 430 440 450
400 410 420 430 440 450
pF1KSD LVSLRQQLDDLRALKHELAFKLQSSDLGVKQKSELNSRLEEKTNQMAATIKQLEQSEKDL
::::::::::::::::::::::::::::::::::::::::::::::::::::::: .
XP_011 LVSLRQQLDDLRALKHELAFKLQSSDLGVKQKSELNSRLEEKTNQMAATIKQLEQRMGST
460 470 480 490 500 510
460
pF1KSD VKQAKTLNSAANKLIPKHH
. : ::
XP_011 KCKRKMLN
>>NP_001124181 (OMIM: 611194) protein RUFY3 isoform 3 [H (506 aa)
initn: 2429 init1: 2429 opt: 2429 Z-score: 1349.0 bits: 259.1 E(85289): 2.1e-68
Smith-Waterman score: 2429; 100.0% identity (100.0% similar) in 385 aa overlap (61-445:121-505)
40 50 60 70 80 90
pF1KSD FRVSMDGEWLCLRELDDISLTPDPEPTHEDPNYLMANERMNLMNMAKLSIKGLIESALNL
::::::::::::::::::::::::::::::
NP_001 TPPSPGSPLPFLLLSYPSGGGGSSGSGKHHPNYLMANERMNLMNMAKLSIKGLIESALNL
100 110 120 130 140 150
100 110 120 130 140 150
pF1KSD GRTLDSDYAPLQQFFVVMEHCLKHGLKAKKTFLGQNKSFWGPLELVEKLVPEAAEITASV
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 GRTLDSDYAPLQQFFVVMEHCLKHGLKAKKTFLGQNKSFWGPLELVEKLVPEAAEITASV
160 170 180 190 200 210
160 170 180 190 200 210
pF1KSD KDLPGLKTPVGRGRAWLRLALMQKKLSEYMKALINKKELLSEFYEPNALMMEEEGAIIAG
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 KDLPGLKTPVGRGRAWLRLALMQKKLSEYMKALINKKELLSEFYEPNALMMEEEGAIIAG
220 230 240 250 260 270
220 230 240 250 260 270
pF1KSD LLVGLNVIDANFCMKGEDLDSQVGVIDFSMYLKDGNSSKGTEGDGQITAILDQKNYVEEL
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 LLVGLNVIDANFCMKGEDLDSQVGVIDFSMYLKDGNSSKGTEGDGQITAILDQKNYVEEL
280 290 300 310 320 330
280 290 300 310 320 330
pF1KSD NRHLNATVNNLQAKVDALEKSNTKLTEELAVANNRIITLQEEMERVKEESSYILESNRKG
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 NRHLNATVNNLQAKVDALEKSNTKLTEELAVANNRIITLQEEMERVKEESSYILESNRKG
340 350 360 370 380 390
340 350 360 370 380 390
pF1KSD PKQDRTAEGQALSEARKHLKEETQLRLDVEKELEMQISMRQEMELAMKMLEKDVCEKQDA
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 PKQDRTAEGQALSEARKHLKEETQLRLDVEKELEMQISMRQEMELAMKMLEKDVCEKQDA
400 410 420 430 440 450
400 410 420 430 440 450
pF1KSD LVSLRQQLDDLRALKHELAFKLQSSDLGVKQKSELNSRLEEKTNQMAATIKQLEQSEKDL
:::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 LVSLRQQLDDLRALKHELAFKLQSSDLGVKQKSELNSRLEEKTNQMAATIKQLEQR
460 470 480 490 500
460
pF1KSD VKQAKTLNSAANKLIPKHH
469 residues in 1 query sequences
60827320 residues in 85289 library sequences
Tcomplib [36.3.4 Apr, 2011] (8 proc)
start: Thu Nov 3 03:51:38 2016 done: Thu Nov 3 03:51:39 2016
Total Scan time: 8.270 Total Display time: 0.050
Function used was FASTA [36.3.4 Apr, 2011]