FASTA searches a protein or DNA sequence data bank 36.3.4 Apr, 2011 Please cite: W.R. Pearson & D.J. Lipman PNAS (1988) 85:2444-2448 Query: pF1KSDA0831, 379 aa 1>>>pF1KSDA0831 379 - 379 aa - 379 aa Library: human.CCDS.faa 18511270 residues in 32554 sequences Statistics: Expectation_n fit: rho(ln(x))= 6.6059+/-0.000825; mu= 11.2340+/- 0.050 mean_var=94.6777+/-18.840, 0's: 0 Z-trim(109.5): 5 B-trim: 248 in 1/51 Lambda= 0.131811 statistics sampled from 10956 (10958) to 10956 sequences Algorithm: FASTA (3.7 Nov 2010) [optimized] Parameters: BL50 matrix (15:-5), open/ext: -10/-2 ktup: 2, E-join: 1 (0.712), E-opt: 0.2 (0.337), width: 16 Scan time: 3.000 The best scores are: opt bits E(32554) CCDS32087.1 ATG14 gene_id:22863|Hs108|chr14 ( 492) 2496 484.6 7.8e-137 >>CCDS32087.1 ATG14 gene_id:22863|Hs108|chr14 (492 aa) initn: 2496 init1: 2496 opt: 2496 Z-score: 2570.1 bits: 484.6 E(32554): 7.8e-137 Smith-Waterman score: 2496; 100.0% identity (100.0% similar) in 379 aa overlap (1-379:114-492) 10 20 30 pF1KSD MSCKMRIEQLKQTICKGNEEMEKNSEGLLK :::::::::::::::::::::::::::::: CCDS32 RLKSKQEEFQKEVLKAMEGKWITDQLRWKIMSCKMRIEQLKQTICKGNEEMEKNSEGLLK 90 100 110 120 130 140 40 50 60 70 80 90 pF1KSD TKEKNQKLYSRAQRHQEKKEKIQRHNRKLGDLVEKKTIDLRSHYERLANLRRSHILELTS :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: CCDS32 TKEKNQKLYSRAQRHQEKKEKIQRHNRKLGDLVEKKTIDLRSHYERLANLRRSHILELTS 150 160 170 180 190 200 100 110 120 130 140 150 pF1KSD VIFPIEEVKTGVRDPADVSSESDSAMTSSTVSKLAEARRTTYLSGRWVCDDHNGDTSISI :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: CCDS32 VIFPIEEVKTGVRDPADVSSESDSAMTSSTVSKLAEARRTTYLSGRWVCDDHNGDTSISI 210 220 230 240 250 260 160 170 180 190 200 210 pF1KSD TGPWISLPNNGDYSAYYSWVEEKKTTQGPDMEQSNPAYTISAALCYATQLVNILSHILDV :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: CCDS32 TGPWISLPNNGDYSAYYSWVEEKKTTQGPDMEQSNPAYTISAALCYATQLVNILSHILDV 270 280 290 300 310 320 220 230 240 250 260 270 pF1KSD NLPKKLCNSEFCGENLSKQKFTRAVKKLNANILYLCFSQHVNLDQLQPLHTLRNLMYLVS :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: CCDS32 NLPKKLCNSEFCGENLSKQKFTRAVKKLNANILYLCFSQHVNLDQLQPLHTLRNLMYLVS 330 340 350 360 370 380 280 290 300 310 320 330 pF1KSD PSSEHLGRSGPFEVRADLEESMEFVDPGVAGESDESGDERVSDEETDLGTDWENLPSPRF :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: CCDS32 PSSEHLGRSGPFEVRADLEESMEFVDPGVAGESDESGDERVSDEETDLGTDWENLPSPRF 390 400 410 420 430 440 340 350 360 370 pF1KSD CDIPSQSVEVSQSQSTQASPPIASSSAGGMISSAAASVTSWFKAYTGHR ::::::::::::::::::::::::::::::::::::::::::::::::: CCDS32 CDIPSQSVEVSQSQSTQASPPIASSSAGGMISSAAASVTSWFKAYTGHR 450 460 470 480 490 379 residues in 1 query sequences 18511270 residues in 32554 library sequences Tcomplib [36.3.4 Apr, 2011] (8 proc) start: Thu Nov 3 03:37:22 2016 done: Thu Nov 3 03:37:22 2016 Total Scan time: 3.000 Total Display time: -0.010 Function used was FASTA [36.3.4 Apr, 2011]