hmmpfam - search one or more sequences against HMM database HMMER 2.3.2 (Oct 2003) Copyright (C) 1992-2003 HHMI/Washington University School of Medicine Freely distributed under the GNU General Public License (GPL) - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - HMM file: /data/Pfam.bin Sequence file: /tmp/20080305/iprscan-20080305-19171737/chunk_1/iprscan-20080305-19171737.nocrc - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query sequence: pF1KSDA0677 Accession: [none] Description: [none] Scores for sequence family classification (score includes all domains): Model Description Score E-value N -------- ----------- ----- ------- --- PF02373.13.fs JmjC domain 218.8 3.3e-64 1 PF02373.13.ls JmjC domain 220.8 2.9e-63 1 PF02375.7.ls jmjN domain 100.8 3.7e-27 1 PF02375.7.fs jmjN domain 99.0 1.3e-26 1 PF00628.19.fs PHD-finger 25.7 7.6e-08 2 Parsed for domains: Model Domain seq-f seq-t hmm-f hmm-t score E-value -------- ------- ----- ----- ----- ----- ----- ------- PF02375.7.fs 1/1 15 60 .. 1 53 [] 99.0 1.3e-26 PF02375.7.ls 1/1 15 60 .. 1 53 [] 100.8 3.7e-27 PF02373.13.fs 1/1 175 291 .. 1 126 [] 218.8 3.3e-64 PF02373.13.ls 1/1 175 291 .. 1 126 [] 220.8 2.9e-63 PF00628.19.fs 1/2 735 769 .. 16 51 .] 21.0 2.4e-06 Alignments of top-scoring domains: PF02375.7.fs: domain 1 of 1, from 15 to 60: score 99.0, E = 1.3e-26 *->PvFkPtmeEFeDplaYIakIHirpgAekyGivKVvPPkeWLELLEGk ++F+PtmeEF+++ +YIa+I +++gA+++G++KVvPPkeW k pF1KSDA067 15 MTFYPTMEEFRNFSRYIAYI-ESQGAHRAGLAKVVPPKEW------K 54 Ppcald<-* P++++d pF1KSDA067 55 PRASYD 60 PF02375.7.ls: domain 1 of 1, from 15 to 60: score 100.8, E = 3.7e-27 *->PvFkPtmeEFeDplaYIakIHirpgAekyGivKVvPPkeWLELLEGk ++F+PtmeEF+++ +YIa+I +++gA+++G++KVvPPkeW k pF1KSDA067 15 MTFYPTMEEFRNFSRYIAYI-ESQGAHRAGLAKVVPPKEW------K 54 Ppcald<-* P++++d pF1KSDA067 55 PRASYD 60 PF02373.13.fs: domain 1 of 1, from 175 to 291: score 218.8, E = 3.3e-64 *->wlYvGmpfSttpwHiEdqglySinylhfgapkvWYgiPseyaekfek +lY+Gm++++++wH+Ed++lySinylhfg+pk WY++P+e+++++e pF1KSDA067 175 YLYFGMWKTSFAWHTEDMDLYSINYLHFGEPKSWYSVPPEHGKRLE- 220 lakvlskhfsaPdlnggeqpdldlrhlvtlisPkvleLrengipvyrfvQ ++++ + +P++ ++++ ++ lrh++tlisP + L++ gip+ +++Q pF1KSDA067 221 --RLAKGF--FPGS-AQSCEAF-LRHKMTLISPLM--LKKYGIPFDKVTQ 262 kpGEfVitfPgayHavfNlGfniaeavNF<-* ++GEf+itfP++yHa+fN+Gfn+ae++NF pF1KSDA067 263 EAGEFMITFPYGYHAGFNHGFNCAESTNF 291 PF02373.13.ls: domain 1 of 1, from 175 to 291: score 220.8, E = 2.9e-63 *->wlYvGmpfSttpwHiEdqglySinylhfgapkvWYgiPseyaekfek +lY+Gm++++++wH+Ed++lySinylhfg+pk WY++P+e+++++e pF1KSDA067 175 YLYFGMWKTSFAWHTEDMDLYSINYLHFGEPKSWYSVPPEHGKRLE- 220 lakvlskhfsaPdlnggeqpdldlrhlvtlisPkvleLrengipvyrfvQ ++++ + +P++ ++++ ++ lrh++tlisP + L++ gip+ +++Q pF1KSDA067 221 --RLAKGF--FPGS-AQSCEAF-LRHKMTLISPLM--LKKYGIPFDKVTQ 262 kpGEfVitfPgayHavfNlGfniaeavNF<-* ++GEf+itfP++yHa+fN+Gfn+ae++NF pF1KSDA067 263 EAGEFMITFPYGYHAGFNHGFNCAESTNF 291 PF00628.19.fs: domain 1 of 2, from 735 to 769: score 21.0, E = 2.4e-06 *->llqCDgCdrwfHlaClgpplepeeipeWyCpeCkpk<-* l+ C +C + +H++C+g p+ ++ W C +C + pF1KSDA067 735 LVSCKKCSVRVHASCYGVPPAKASED-WMCSRCSAN 769 //