Result of FASTA (omim) for pF1KSDA0652
FASTA searches a protein or DNA sequence data bank 36.3.4 Apr, 2011
Please cite:
W.R. Pearson & D.J. Lipman PNAS (1988) 85:2444-2448

Query: pF1KSDA0652, 517 aa
  1>>>pF1KSDA0652 517 - 517 aa - 517 aa
Library: /omim/omim.rfq.tfa
  60827320 residues in 85289 sequences

Statistics:  Expectation_n fit: rho(ln(x))= 6.5518+/-0.000341; mu= 13.2185+/- 0.021
 mean_var=108.4638+/-21.912, 0's: 0 Z-trim(116.3): 65  B-trim: 0 in 0/56
 Lambda= 0.123149
 statistics sampled from 27344 (27409) to 27344 sequences
Algorithm: FASTA (3.7 Nov 2010) [optimized]
Parameters: BL50 matrix (15:-5), open/ext: -10/-2
 ktup: 2, E-join: 1 (0.682), E-opt: 0.2 (0.321), width:  16
 Scan time:  8.900

The best scores are:                                      opt bits E(85289)
NP_001333257 (OMIM: 615088) autophagy-related prot ( 517) 3419 618.3 1.7e-176
NP_001333249 (OMIM: 615088) autophagy-related prot ( 517) 3419 618.3 1.7e-176
NP_001333251 (OMIM: 615088) autophagy-related prot ( 517) 3419 618.3 1.7e-176
NP_001192049 (OMIM: 615088) autophagy-related prot ( 517) 3419 618.3 1.7e-176
NP_001333261 (OMIM: 615088) autophagy-related prot ( 517) 3419 618.3 1.7e-176
NP_001333259 (OMIM: 615088) autophagy-related prot ( 517) 3419 618.3 1.7e-176
NP_001333256 (OMIM: 615088) autophagy-related prot ( 517) 3419 618.3 1.7e-176
XP_016874096 (OMIM: 615088) PREDICTED: autophagy-r ( 517) 3419 618.3 1.7e-176
XP_016874092 (OMIM: 615088) PREDICTED: autophagy-r ( 517) 3419 618.3 1.7e-176
NP_001333252 (OMIM: 615088) autophagy-related prot ( 517) 3419 618.3 1.7e-176
NP_001333248 (OMIM: 615088) autophagy-related prot ( 517) 3419 618.3 1.7e-176
NP_001136145 (OMIM: 615088) autophagy-related prot ( 517) 3419 618.3 1.7e-176
NP_001333254 (OMIM: 615088) autophagy-related prot ( 517) 3419 618.3 1.7e-176
NP_001333258 (OMIM: 615088) autophagy-related prot ( 517) 3419 618.3 1.7e-176
NP_001333260 (OMIM: 615088) autophagy-related prot ( 517) 3419 618.3 1.7e-176
NP_001333255 (OMIM: 615088) autophagy-related prot ( 517) 3419 618.3 1.7e-176
NP_001333250 (OMIM: 615088) autophagy-related prot ( 517) 3419 618.3 1.7e-176
NP_001333253 (OMIM: 615088) autophagy-related prot ( 517) 3419 618.3 1.7e-176
NP_001333269 (OMIM: 615088) autophagy-related prot ( 503) 2708 492.0 1.7e-138
NP_001333267 (OMIM: 615088) autophagy-related prot ( 503) 2708 492.0 1.7e-138
NP_001333288 (OMIM: 615088) autophagy-related prot ( 322) 2162 394.9 1.9e-109
NP_001333287 (OMIM: 615088) autophagy-related prot ( 322) 2162 394.9 1.9e-109
NP_001333286 (OMIM: 615088) autophagy-related prot ( 322) 2162 394.9 1.9e-109
NP_001333246 (OMIM: 615088) autophagy-related prot ( 541) 1757 323.1 1.3e-87
XP_011518802 (OMIM: 615088) PREDICTED: autophagy-r ( 541) 1757 323.1 1.3e-87
NP_001333247 (OMIM: 615088) autophagy-related prot ( 541) 1757 323.1 1.3e-87
NP_001333262 (OMIM: 615088) autophagy-related prot ( 508) 1744 320.7 6.4e-87
NP_001333264 (OMIM: 615088) autophagy-related prot ( 508) 1744 320.7 6.4e-87
NP_001333263 (OMIM: 615088) autophagy-related prot ( 508) 1744 320.7 6.4e-87
NP_001333266 (OMIM: 615088) autophagy-related prot ( 508) 1744 320.7 6.4e-87
XP_011518804 (OMIM: 615088) PREDICTED: autophagy-r ( 508) 1744 320.7 6.4e-87
NP_001333265 (OMIM: 615088) autophagy-related prot ( 508) 1744 320.7 6.4e-87
XP_011518798 (OMIM: 615088) PREDICTED: autophagy-r ( 550) 1744 320.7 6.8e-87
XP_011518795 (OMIM: 615088) PREDICTED: autophagy-r ( 550) 1744 320.7 6.8e-87
XP_006718459 (OMIM: 615088) PREDICTED: autophagy-r ( 550) 1744 320.7 6.8e-87
NP_001333245 (OMIM: 615088) autophagy-related prot ( 550) 1744 320.7 6.8e-87
NP_001192048 (OMIM: 615088) autophagy-related prot ( 550) 1744 320.7 6.8e-87
XP_005253325 (OMIM: 615088) PREDICTED: autophagy-r ( 550) 1744 320.7 6.8e-87
XP_011518801 (OMIM: 615088) PREDICTED: autophagy-r ( 550) 1744 320.7 6.8e-87
NP_001333242 (OMIM: 615088) autophagy-related prot ( 550) 1744 320.7 6.8e-87
XP_005253323 (OMIM: 615088) PREDICTED: autophagy-r ( 550) 1744 320.7 6.8e-87
NP_001333243 (OMIM: 615088) autophagy-related prot ( 550) 1744 320.7 6.8e-87
XP_005253322 (OMIM: 615088) PREDICTED: autophagy-r ( 550) 1744 320.7 6.8e-87
NP_001333244 (OMIM: 615088) autophagy-related prot ( 550) 1744 320.7 6.8e-87
XP_016874088 (OMIM: 615088) PREDICTED: autophagy-r ( 550) 1744 320.7 6.8e-87
NP_001333241 (OMIM: 615088) autophagy-related prot ( 550) 1744 320.7 6.8e-87
NP_001333240 (OMIM: 615088) autophagy-related prot ( 550) 1744 320.7 6.8e-87
NP_001333284 (OMIM: 615088) autophagy-related prot ( 466) 1738 319.6 1.2e-86
NP_001333285 (OMIM: 615088) autophagy-related prot ( 466) 1738 319.6 1.2e-86
NP_001333273 (OMIM: 615088) autophagy-related prot ( 480) 1738 319.6 1.3e-86


>>NP_001333257 (OMIM: 615088) autophagy-related protein   (517 aa)
 initn: 3419 init1: 3419 opt: 3419  Z-score: 3289.7  bits: 618.3 E(85289): 1.7e-176
Smith-Waterman score: 3419; 100.0% identity (100.0% similar) in 517 aa overlap (1-517:1-517)

               10        20        30        40        50        60
pF1KSD METDLNSQDRKDLDKFIKFFALKTVQVIVQARLGEKICTRSSSSPTGSDWFNLAIKDIPE
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 METDLNSQDRKDLDKFIKFFALKTVQVIVQARLGEKICTRSSSSPTGSDWFNLAIKDIPE
               10        20        30        40        50        60

               70        80        90       100       110       120
pF1KSD VTHEAKKALAGQLPAVGRSMCVEISLKTSEGDSMELEIWCLEMNEKCDKEIKVSYTVYNR
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 VTHEAKKALAGQLPAVGRSMCVEISLKTSEGDSMELEIWCLEMNEKCDKEIKVSYTVYNR
               70        80        90       100       110       120

              130       140       150       160       170       180
pF1KSD LSLLLKSLLAITRVTPAYRLSRKQGHEYVILYRIYFGEVQLSGLGEGFQTVRVGTVGTPV
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 LSLLLKSLLAITRVTPAYRLSRKQGHEYVILYRIYFGEVQLSGLGEGFQTVRVGTVGTPV
              130       140       150       160       170       180

              190       200       210       220       230       240
pF1KSD GTITLSCAYRINLAFMSTRQFERTPPIMGIIIDHFVDRPYPSSSPMHPCNYRTAGEDTGV
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 GTITLSCAYRINLAFMSTRQFERTPPIMGIIIDHFVDRPYPSSSPMHPCNYRTAGEDTGV
              190       200       210       220       230       240

              250       260       270       280       290       300
pF1KSD IYPSVEDSQEVCTTSFSTSPPSQLSSSRLSYQPAALGVGSADLAYPVVFAAGLNATHPHQ
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 IYPSVEDSQEVCTTSFSTSPPSQLSSSRLSYQPAALGVGSADLAYPVVFAAGLNATHPHQ
              250       260       270       280       290       300

              310       320       330       340       350       360
pF1KSD LMVPGKEGGVPLAPNQPVHGTQADQERLATCTPSDRTHCAATPSSSEDTETVSNSSEGRA
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 LMVPGKEGGVPLAPNQPVHGTQADQERLATCTPSDRTHCAATPSSSEDTETVSNSSEGRA
              310       320       330       340       350       360

              370       380       390       400       410       420
pF1KSD SPHDVLETIFVRKVGAFVNKPINQVTLTSLDIPFAMFAPKNLELEDTDPMVNPPDSPETE
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 SPHDVLETIFVRKVGAFVNKPINQVTLTSLDIPFAMFAPKNLELEDTDPMVNPPDSPETE
              370       380       390       400       410       420

              430       440       450       460       470       480
pF1KSD SPLQGSLHSDGSSGGSSGNTHDDFVMIDFKPAFSKDDILPMDLGTFYREFQNPPQLSSLS
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 SPLQGSLHSDGSSGGSSGNTHDDFVMIDFKPAFSKDDILPMDLGTFYREFQNPPQLSSLS
              430       440       450       460       470       480

              490       500       510       
pF1KSD IDIGAQSMAEDLDSLPEKLAVHEKNVREFDAFVETLQ
       :::::::::::::::::::::::::::::::::::::
NP_001 IDIGAQSMAEDLDSLPEKLAVHEKNVREFDAFVETLQ
              490       500       510       

>>NP_001333249 (OMIM: 615088) autophagy-related protein   (517 aa)
 initn: 3419 init1: 3419 opt: 3419  Z-score: 3289.7  bits: 618.3 E(85289): 1.7e-176
Smith-Waterman score: 3419; 100.0% identity (100.0% similar) in 517 aa overlap (1-517:1-517)

               10        20        30        40        50        60
pF1KSD METDLNSQDRKDLDKFIKFFALKTVQVIVQARLGEKICTRSSSSPTGSDWFNLAIKDIPE
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 METDLNSQDRKDLDKFIKFFALKTVQVIVQARLGEKICTRSSSSPTGSDWFNLAIKDIPE
               10        20        30        40        50        60

               70        80        90       100       110       120
pF1KSD VTHEAKKALAGQLPAVGRSMCVEISLKTSEGDSMELEIWCLEMNEKCDKEIKVSYTVYNR
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 VTHEAKKALAGQLPAVGRSMCVEISLKTSEGDSMELEIWCLEMNEKCDKEIKVSYTVYNR
               70        80        90       100       110       120

              130       140       150       160       170       180
pF1KSD LSLLLKSLLAITRVTPAYRLSRKQGHEYVILYRIYFGEVQLSGLGEGFQTVRVGTVGTPV
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 LSLLLKSLLAITRVTPAYRLSRKQGHEYVILYRIYFGEVQLSGLGEGFQTVRVGTVGTPV
              130       140       150       160       170       180

              190       200       210       220       230       240
pF1KSD GTITLSCAYRINLAFMSTRQFERTPPIMGIIIDHFVDRPYPSSSPMHPCNYRTAGEDTGV
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 GTITLSCAYRINLAFMSTRQFERTPPIMGIIIDHFVDRPYPSSSPMHPCNYRTAGEDTGV
              190       200       210       220       230       240

              250       260       270       280       290       300
pF1KSD IYPSVEDSQEVCTTSFSTSPPSQLSSSRLSYQPAALGVGSADLAYPVVFAAGLNATHPHQ
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 IYPSVEDSQEVCTTSFSTSPPSQLSSSRLSYQPAALGVGSADLAYPVVFAAGLNATHPHQ
              250       260       270       280       290       300

              310       320       330       340       350       360
pF1KSD LMVPGKEGGVPLAPNQPVHGTQADQERLATCTPSDRTHCAATPSSSEDTETVSNSSEGRA
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 LMVPGKEGGVPLAPNQPVHGTQADQERLATCTPSDRTHCAATPSSSEDTETVSNSSEGRA
              310       320       330       340       350       360

              370       380       390       400       410       420
pF1KSD SPHDVLETIFVRKVGAFVNKPINQVTLTSLDIPFAMFAPKNLELEDTDPMVNPPDSPETE
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 SPHDVLETIFVRKVGAFVNKPINQVTLTSLDIPFAMFAPKNLELEDTDPMVNPPDSPETE
              370       380       390       400       410       420

              430       440       450       460       470       480
pF1KSD SPLQGSLHSDGSSGGSSGNTHDDFVMIDFKPAFSKDDILPMDLGTFYREFQNPPQLSSLS
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 SPLQGSLHSDGSSGGSSGNTHDDFVMIDFKPAFSKDDILPMDLGTFYREFQNPPQLSSLS
              430       440       450       460       470       480

              490       500       510       
pF1KSD IDIGAQSMAEDLDSLPEKLAVHEKNVREFDAFVETLQ
       :::::::::::::::::::::::::::::::::::::
NP_001 IDIGAQSMAEDLDSLPEKLAVHEKNVREFDAFVETLQ
              490       500       510       

>>NP_001333251 (OMIM: 615088) autophagy-related protein   (517 aa)
 initn: 3419 init1: 3419 opt: 3419  Z-score: 3289.7  bits: 618.3 E(85289): 1.7e-176
Smith-Waterman score: 3419; 100.0% identity (100.0% similar) in 517 aa overlap (1-517:1-517)

               10        20        30        40        50        60
pF1KSD METDLNSQDRKDLDKFIKFFALKTVQVIVQARLGEKICTRSSSSPTGSDWFNLAIKDIPE
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 METDLNSQDRKDLDKFIKFFALKTVQVIVQARLGEKICTRSSSSPTGSDWFNLAIKDIPE
               10        20        30        40        50        60

               70        80        90       100       110       120
pF1KSD VTHEAKKALAGQLPAVGRSMCVEISLKTSEGDSMELEIWCLEMNEKCDKEIKVSYTVYNR
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 VTHEAKKALAGQLPAVGRSMCVEISLKTSEGDSMELEIWCLEMNEKCDKEIKVSYTVYNR
               70        80        90       100       110       120

              130       140       150       160       170       180
pF1KSD LSLLLKSLLAITRVTPAYRLSRKQGHEYVILYRIYFGEVQLSGLGEGFQTVRVGTVGTPV
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 LSLLLKSLLAITRVTPAYRLSRKQGHEYVILYRIYFGEVQLSGLGEGFQTVRVGTVGTPV
              130       140       150       160       170       180

              190       200       210       220       230       240
pF1KSD GTITLSCAYRINLAFMSTRQFERTPPIMGIIIDHFVDRPYPSSSPMHPCNYRTAGEDTGV
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 GTITLSCAYRINLAFMSTRQFERTPPIMGIIIDHFVDRPYPSSSPMHPCNYRTAGEDTGV
              190       200       210       220       230       240

              250       260       270       280       290       300
pF1KSD IYPSVEDSQEVCTTSFSTSPPSQLSSSRLSYQPAALGVGSADLAYPVVFAAGLNATHPHQ
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 IYPSVEDSQEVCTTSFSTSPPSQLSSSRLSYQPAALGVGSADLAYPVVFAAGLNATHPHQ
              250       260       270       280       290       300

              310       320       330       340       350       360
pF1KSD LMVPGKEGGVPLAPNQPVHGTQADQERLATCTPSDRTHCAATPSSSEDTETVSNSSEGRA
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 LMVPGKEGGVPLAPNQPVHGTQADQERLATCTPSDRTHCAATPSSSEDTETVSNSSEGRA
              310       320       330       340       350       360

              370       380       390       400       410       420
pF1KSD SPHDVLETIFVRKVGAFVNKPINQVTLTSLDIPFAMFAPKNLELEDTDPMVNPPDSPETE
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 SPHDVLETIFVRKVGAFVNKPINQVTLTSLDIPFAMFAPKNLELEDTDPMVNPPDSPETE
              370       380       390       400       410       420

              430       440       450       460       470       480
pF1KSD SPLQGSLHSDGSSGGSSGNTHDDFVMIDFKPAFSKDDILPMDLGTFYREFQNPPQLSSLS
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 SPLQGSLHSDGSSGGSSGNTHDDFVMIDFKPAFSKDDILPMDLGTFYREFQNPPQLSSLS
              430       440       450       460       470       480

              490       500       510       
pF1KSD IDIGAQSMAEDLDSLPEKLAVHEKNVREFDAFVETLQ
       :::::::::::::::::::::::::::::::::::::
NP_001 IDIGAQSMAEDLDSLPEKLAVHEKNVREFDAFVETLQ
              490       500       510       

>>NP_001192049 (OMIM: 615088) autophagy-related protein   (517 aa)
 initn: 3419 init1: 3419 opt: 3419  Z-score: 3289.7  bits: 618.3 E(85289): 1.7e-176
Smith-Waterman score: 3419; 100.0% identity (100.0% similar) in 517 aa overlap (1-517:1-517)

               10        20        30        40        50        60
pF1KSD METDLNSQDRKDLDKFIKFFALKTVQVIVQARLGEKICTRSSSSPTGSDWFNLAIKDIPE
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 METDLNSQDRKDLDKFIKFFALKTVQVIVQARLGEKICTRSSSSPTGSDWFNLAIKDIPE
               10        20        30        40        50        60

               70        80        90       100       110       120
pF1KSD VTHEAKKALAGQLPAVGRSMCVEISLKTSEGDSMELEIWCLEMNEKCDKEIKVSYTVYNR
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 VTHEAKKALAGQLPAVGRSMCVEISLKTSEGDSMELEIWCLEMNEKCDKEIKVSYTVYNR
               70        80        90       100       110       120

              130       140       150       160       170       180
pF1KSD LSLLLKSLLAITRVTPAYRLSRKQGHEYVILYRIYFGEVQLSGLGEGFQTVRVGTVGTPV
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 LSLLLKSLLAITRVTPAYRLSRKQGHEYVILYRIYFGEVQLSGLGEGFQTVRVGTVGTPV
              130       140       150       160       170       180

              190       200       210       220       230       240
pF1KSD GTITLSCAYRINLAFMSTRQFERTPPIMGIIIDHFVDRPYPSSSPMHPCNYRTAGEDTGV
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 GTITLSCAYRINLAFMSTRQFERTPPIMGIIIDHFVDRPYPSSSPMHPCNYRTAGEDTGV
              190       200       210       220       230       240

              250       260       270       280       290       300
pF1KSD IYPSVEDSQEVCTTSFSTSPPSQLSSSRLSYQPAALGVGSADLAYPVVFAAGLNATHPHQ
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 IYPSVEDSQEVCTTSFSTSPPSQLSSSRLSYQPAALGVGSADLAYPVVFAAGLNATHPHQ
              250       260       270       280       290       300

              310       320       330       340       350       360
pF1KSD LMVPGKEGGVPLAPNQPVHGTQADQERLATCTPSDRTHCAATPSSSEDTETVSNSSEGRA
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 LMVPGKEGGVPLAPNQPVHGTQADQERLATCTPSDRTHCAATPSSSEDTETVSNSSEGRA
              310       320       330       340       350       360

              370       380       390       400       410       420
pF1KSD SPHDVLETIFVRKVGAFVNKPINQVTLTSLDIPFAMFAPKNLELEDTDPMVNPPDSPETE
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 SPHDVLETIFVRKVGAFVNKPINQVTLTSLDIPFAMFAPKNLELEDTDPMVNPPDSPETE
              370       380       390       400       410       420

              430       440       450       460       470       480
pF1KSD SPLQGSLHSDGSSGGSSGNTHDDFVMIDFKPAFSKDDILPMDLGTFYREFQNPPQLSSLS
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 SPLQGSLHSDGSSGGSSGNTHDDFVMIDFKPAFSKDDILPMDLGTFYREFQNPPQLSSLS
              430       440       450       460       470       480

              490       500       510       
pF1KSD IDIGAQSMAEDLDSLPEKLAVHEKNVREFDAFVETLQ
       :::::::::::::::::::::::::::::::::::::
NP_001 IDIGAQSMAEDLDSLPEKLAVHEKNVREFDAFVETLQ
              490       500       510       

>>NP_001333261 (OMIM: 615088) autophagy-related protein   (517 aa)
 initn: 3419 init1: 3419 opt: 3419  Z-score: 3289.7  bits: 618.3 E(85289): 1.7e-176
Smith-Waterman score: 3419; 100.0% identity (100.0% similar) in 517 aa overlap (1-517:1-517)

               10        20        30        40        50        60
pF1KSD METDLNSQDRKDLDKFIKFFALKTVQVIVQARLGEKICTRSSSSPTGSDWFNLAIKDIPE
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 METDLNSQDRKDLDKFIKFFALKTVQVIVQARLGEKICTRSSSSPTGSDWFNLAIKDIPE
               10        20        30        40        50        60

               70        80        90       100       110       120
pF1KSD VTHEAKKALAGQLPAVGRSMCVEISLKTSEGDSMELEIWCLEMNEKCDKEIKVSYTVYNR
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 VTHEAKKALAGQLPAVGRSMCVEISLKTSEGDSMELEIWCLEMNEKCDKEIKVSYTVYNR
               70        80        90       100       110       120

              130       140       150       160       170       180
pF1KSD LSLLLKSLLAITRVTPAYRLSRKQGHEYVILYRIYFGEVQLSGLGEGFQTVRVGTVGTPV
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 LSLLLKSLLAITRVTPAYRLSRKQGHEYVILYRIYFGEVQLSGLGEGFQTVRVGTVGTPV
              130       140       150       160       170       180

              190       200       210       220       230       240
pF1KSD GTITLSCAYRINLAFMSTRQFERTPPIMGIIIDHFVDRPYPSSSPMHPCNYRTAGEDTGV
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 GTITLSCAYRINLAFMSTRQFERTPPIMGIIIDHFVDRPYPSSSPMHPCNYRTAGEDTGV
              190       200       210       220       230       240

              250       260       270       280       290       300
pF1KSD IYPSVEDSQEVCTTSFSTSPPSQLSSSRLSYQPAALGVGSADLAYPVVFAAGLNATHPHQ
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 IYPSVEDSQEVCTTSFSTSPPSQLSSSRLSYQPAALGVGSADLAYPVVFAAGLNATHPHQ
              250       260       270       280       290       300

              310       320       330       340       350       360
pF1KSD LMVPGKEGGVPLAPNQPVHGTQADQERLATCTPSDRTHCAATPSSSEDTETVSNSSEGRA
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 LMVPGKEGGVPLAPNQPVHGTQADQERLATCTPSDRTHCAATPSSSEDTETVSNSSEGRA
              310       320       330       340       350       360

              370       380       390       400       410       420
pF1KSD SPHDVLETIFVRKVGAFVNKPINQVTLTSLDIPFAMFAPKNLELEDTDPMVNPPDSPETE
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 SPHDVLETIFVRKVGAFVNKPINQVTLTSLDIPFAMFAPKNLELEDTDPMVNPPDSPETE
              370       380       390       400       410       420

              430       440       450       460       470       480
pF1KSD SPLQGSLHSDGSSGGSSGNTHDDFVMIDFKPAFSKDDILPMDLGTFYREFQNPPQLSSLS
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 SPLQGSLHSDGSSGGSSGNTHDDFVMIDFKPAFSKDDILPMDLGTFYREFQNPPQLSSLS
              430       440       450       460       470       480

              490       500       510       
pF1KSD IDIGAQSMAEDLDSLPEKLAVHEKNVREFDAFVETLQ
       :::::::::::::::::::::::::::::::::::::
NP_001 IDIGAQSMAEDLDSLPEKLAVHEKNVREFDAFVETLQ
              490       500       510       

>>NP_001333259 (OMIM: 615088) autophagy-related protein   (517 aa)
 initn: 3419 init1: 3419 opt: 3419  Z-score: 3289.7  bits: 618.3 E(85289): 1.7e-176
Smith-Waterman score: 3419; 100.0% identity (100.0% similar) in 517 aa overlap (1-517:1-517)

               10        20        30        40        50        60
pF1KSD METDLNSQDRKDLDKFIKFFALKTVQVIVQARLGEKICTRSSSSPTGSDWFNLAIKDIPE
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 METDLNSQDRKDLDKFIKFFALKTVQVIVQARLGEKICTRSSSSPTGSDWFNLAIKDIPE
               10        20        30        40        50        60

               70        80        90       100       110       120
pF1KSD VTHEAKKALAGQLPAVGRSMCVEISLKTSEGDSMELEIWCLEMNEKCDKEIKVSYTVYNR
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 VTHEAKKALAGQLPAVGRSMCVEISLKTSEGDSMELEIWCLEMNEKCDKEIKVSYTVYNR
               70        80        90       100       110       120

              130       140       150       160       170       180
pF1KSD LSLLLKSLLAITRVTPAYRLSRKQGHEYVILYRIYFGEVQLSGLGEGFQTVRVGTVGTPV
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 LSLLLKSLLAITRVTPAYRLSRKQGHEYVILYRIYFGEVQLSGLGEGFQTVRVGTVGTPV
              130       140       150       160       170       180

              190       200       210       220       230       240
pF1KSD GTITLSCAYRINLAFMSTRQFERTPPIMGIIIDHFVDRPYPSSSPMHPCNYRTAGEDTGV
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 GTITLSCAYRINLAFMSTRQFERTPPIMGIIIDHFVDRPYPSSSPMHPCNYRTAGEDTGV
              190       200       210       220       230       240

              250       260       270       280       290       300
pF1KSD IYPSVEDSQEVCTTSFSTSPPSQLSSSRLSYQPAALGVGSADLAYPVVFAAGLNATHPHQ
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 IYPSVEDSQEVCTTSFSTSPPSQLSSSRLSYQPAALGVGSADLAYPVVFAAGLNATHPHQ
              250       260       270       280       290       300

              310       320       330       340       350       360
pF1KSD LMVPGKEGGVPLAPNQPVHGTQADQERLATCTPSDRTHCAATPSSSEDTETVSNSSEGRA
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 LMVPGKEGGVPLAPNQPVHGTQADQERLATCTPSDRTHCAATPSSSEDTETVSNSSEGRA
              310       320       330       340       350       360

              370       380       390       400       410       420
pF1KSD SPHDVLETIFVRKVGAFVNKPINQVTLTSLDIPFAMFAPKNLELEDTDPMVNPPDSPETE
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 SPHDVLETIFVRKVGAFVNKPINQVTLTSLDIPFAMFAPKNLELEDTDPMVNPPDSPETE
              370       380       390       400       410       420

              430       440       450       460       470       480
pF1KSD SPLQGSLHSDGSSGGSSGNTHDDFVMIDFKPAFSKDDILPMDLGTFYREFQNPPQLSSLS
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 SPLQGSLHSDGSSGGSSGNTHDDFVMIDFKPAFSKDDILPMDLGTFYREFQNPPQLSSLS
              430       440       450       460       470       480

              490       500       510       
pF1KSD IDIGAQSMAEDLDSLPEKLAVHEKNVREFDAFVETLQ
       :::::::::::::::::::::::::::::::::::::
NP_001 IDIGAQSMAEDLDSLPEKLAVHEKNVREFDAFVETLQ
              490       500       510       

>>NP_001333256 (OMIM: 615088) autophagy-related protein   (517 aa)
 initn: 3419 init1: 3419 opt: 3419  Z-score: 3289.7  bits: 618.3 E(85289): 1.7e-176
Smith-Waterman score: 3419; 100.0% identity (100.0% similar) in 517 aa overlap (1-517:1-517)

               10        20        30        40        50        60
pF1KSD METDLNSQDRKDLDKFIKFFALKTVQVIVQARLGEKICTRSSSSPTGSDWFNLAIKDIPE
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 METDLNSQDRKDLDKFIKFFALKTVQVIVQARLGEKICTRSSSSPTGSDWFNLAIKDIPE
               10        20        30        40        50        60

               70        80        90       100       110       120
pF1KSD VTHEAKKALAGQLPAVGRSMCVEISLKTSEGDSMELEIWCLEMNEKCDKEIKVSYTVYNR
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 VTHEAKKALAGQLPAVGRSMCVEISLKTSEGDSMELEIWCLEMNEKCDKEIKVSYTVYNR
               70        80        90       100       110       120

              130       140       150       160       170       180
pF1KSD LSLLLKSLLAITRVTPAYRLSRKQGHEYVILYRIYFGEVQLSGLGEGFQTVRVGTVGTPV
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 LSLLLKSLLAITRVTPAYRLSRKQGHEYVILYRIYFGEVQLSGLGEGFQTVRVGTVGTPV
              130       140       150       160       170       180

              190       200       210       220       230       240
pF1KSD GTITLSCAYRINLAFMSTRQFERTPPIMGIIIDHFVDRPYPSSSPMHPCNYRTAGEDTGV
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 GTITLSCAYRINLAFMSTRQFERTPPIMGIIIDHFVDRPYPSSSPMHPCNYRTAGEDTGV
              190       200       210       220       230       240

              250       260       270       280       290       300
pF1KSD IYPSVEDSQEVCTTSFSTSPPSQLSSSRLSYQPAALGVGSADLAYPVVFAAGLNATHPHQ
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 IYPSVEDSQEVCTTSFSTSPPSQLSSSRLSYQPAALGVGSADLAYPVVFAAGLNATHPHQ
              250       260       270       280       290       300

              310       320       330       340       350       360
pF1KSD LMVPGKEGGVPLAPNQPVHGTQADQERLATCTPSDRTHCAATPSSSEDTETVSNSSEGRA
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 LMVPGKEGGVPLAPNQPVHGTQADQERLATCTPSDRTHCAATPSSSEDTETVSNSSEGRA
              310       320       330       340       350       360

              370       380       390       400       410       420
pF1KSD SPHDVLETIFVRKVGAFVNKPINQVTLTSLDIPFAMFAPKNLELEDTDPMVNPPDSPETE
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 SPHDVLETIFVRKVGAFVNKPINQVTLTSLDIPFAMFAPKNLELEDTDPMVNPPDSPETE
              370       380       390       400       410       420

              430       440       450       460       470       480
pF1KSD SPLQGSLHSDGSSGGSSGNTHDDFVMIDFKPAFSKDDILPMDLGTFYREFQNPPQLSSLS
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 SPLQGSLHSDGSSGGSSGNTHDDFVMIDFKPAFSKDDILPMDLGTFYREFQNPPQLSSLS
              430       440       450       460       470       480

              490       500       510       
pF1KSD IDIGAQSMAEDLDSLPEKLAVHEKNVREFDAFVETLQ
       :::::::::::::::::::::::::::::::::::::
NP_001 IDIGAQSMAEDLDSLPEKLAVHEKNVREFDAFVETLQ
              490       500       510       

>>XP_016874096 (OMIM: 615088) PREDICTED: autophagy-relat  (517 aa)
 initn: 3419 init1: 3419 opt: 3419  Z-score: 3289.7  bits: 618.3 E(85289): 1.7e-176
Smith-Waterman score: 3419; 100.0% identity (100.0% similar) in 517 aa overlap (1-517:1-517)

               10        20        30        40        50        60
pF1KSD METDLNSQDRKDLDKFIKFFALKTVQVIVQARLGEKICTRSSSSPTGSDWFNLAIKDIPE
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_016 METDLNSQDRKDLDKFIKFFALKTVQVIVQARLGEKICTRSSSSPTGSDWFNLAIKDIPE
               10        20        30        40        50        60

               70        80        90       100       110       120
pF1KSD VTHEAKKALAGQLPAVGRSMCVEISLKTSEGDSMELEIWCLEMNEKCDKEIKVSYTVYNR
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_016 VTHEAKKALAGQLPAVGRSMCVEISLKTSEGDSMELEIWCLEMNEKCDKEIKVSYTVYNR
               70        80        90       100       110       120

              130       140       150       160       170       180
pF1KSD LSLLLKSLLAITRVTPAYRLSRKQGHEYVILYRIYFGEVQLSGLGEGFQTVRVGTVGTPV
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_016 LSLLLKSLLAITRVTPAYRLSRKQGHEYVILYRIYFGEVQLSGLGEGFQTVRVGTVGTPV
              130       140       150       160       170       180

              190       200       210       220       230       240
pF1KSD GTITLSCAYRINLAFMSTRQFERTPPIMGIIIDHFVDRPYPSSSPMHPCNYRTAGEDTGV
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_016 GTITLSCAYRINLAFMSTRQFERTPPIMGIIIDHFVDRPYPSSSPMHPCNYRTAGEDTGV
              190       200       210       220       230       240

              250       260       270       280       290       300
pF1KSD IYPSVEDSQEVCTTSFSTSPPSQLSSSRLSYQPAALGVGSADLAYPVVFAAGLNATHPHQ
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_016 IYPSVEDSQEVCTTSFSTSPPSQLSSSRLSYQPAALGVGSADLAYPVVFAAGLNATHPHQ
              250       260       270       280       290       300

              310       320       330       340       350       360
pF1KSD LMVPGKEGGVPLAPNQPVHGTQADQERLATCTPSDRTHCAATPSSSEDTETVSNSSEGRA
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_016 LMVPGKEGGVPLAPNQPVHGTQADQERLATCTPSDRTHCAATPSSSEDTETVSNSSEGRA
              310       320       330       340       350       360

              370       380       390       400       410       420
pF1KSD SPHDVLETIFVRKVGAFVNKPINQVTLTSLDIPFAMFAPKNLELEDTDPMVNPPDSPETE
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_016 SPHDVLETIFVRKVGAFVNKPINQVTLTSLDIPFAMFAPKNLELEDTDPMVNPPDSPETE
              370       380       390       400       410       420

              430       440       450       460       470       480
pF1KSD SPLQGSLHSDGSSGGSSGNTHDDFVMIDFKPAFSKDDILPMDLGTFYREFQNPPQLSSLS
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_016 SPLQGSLHSDGSSGGSSGNTHDDFVMIDFKPAFSKDDILPMDLGTFYREFQNPPQLSSLS
              430       440       450       460       470       480

              490       500       510       
pF1KSD IDIGAQSMAEDLDSLPEKLAVHEKNVREFDAFVETLQ
       :::::::::::::::::::::::::::::::::::::
XP_016 IDIGAQSMAEDLDSLPEKLAVHEKNVREFDAFVETLQ
              490       500       510       

>>XP_016874092 (OMIM: 615088) PREDICTED: autophagy-relat  (517 aa)
 initn: 3419 init1: 3419 opt: 3419  Z-score: 3289.7  bits: 618.3 E(85289): 1.7e-176
Smith-Waterman score: 3419; 100.0% identity (100.0% similar) in 517 aa overlap (1-517:1-517)

               10        20        30        40        50        60
pF1KSD METDLNSQDRKDLDKFIKFFALKTVQVIVQARLGEKICTRSSSSPTGSDWFNLAIKDIPE
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_016 METDLNSQDRKDLDKFIKFFALKTVQVIVQARLGEKICTRSSSSPTGSDWFNLAIKDIPE
               10        20        30        40        50        60

               70        80        90       100       110       120
pF1KSD VTHEAKKALAGQLPAVGRSMCVEISLKTSEGDSMELEIWCLEMNEKCDKEIKVSYTVYNR
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_016 VTHEAKKALAGQLPAVGRSMCVEISLKTSEGDSMELEIWCLEMNEKCDKEIKVSYTVYNR
               70        80        90       100       110       120

              130       140       150       160       170       180
pF1KSD LSLLLKSLLAITRVTPAYRLSRKQGHEYVILYRIYFGEVQLSGLGEGFQTVRVGTVGTPV
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_016 LSLLLKSLLAITRVTPAYRLSRKQGHEYVILYRIYFGEVQLSGLGEGFQTVRVGTVGTPV
              130       140       150       160       170       180

              190       200       210       220       230       240
pF1KSD GTITLSCAYRINLAFMSTRQFERTPPIMGIIIDHFVDRPYPSSSPMHPCNYRTAGEDTGV
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_016 GTITLSCAYRINLAFMSTRQFERTPPIMGIIIDHFVDRPYPSSSPMHPCNYRTAGEDTGV
              190       200       210       220       230       240

              250       260       270       280       290       300
pF1KSD IYPSVEDSQEVCTTSFSTSPPSQLSSSRLSYQPAALGVGSADLAYPVVFAAGLNATHPHQ
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_016 IYPSVEDSQEVCTTSFSTSPPSQLSSSRLSYQPAALGVGSADLAYPVVFAAGLNATHPHQ
              250       260       270       280       290       300

              310       320       330       340       350       360
pF1KSD LMVPGKEGGVPLAPNQPVHGTQADQERLATCTPSDRTHCAATPSSSEDTETVSNSSEGRA
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_016 LMVPGKEGGVPLAPNQPVHGTQADQERLATCTPSDRTHCAATPSSSEDTETVSNSSEGRA
              310       320       330       340       350       360

              370       380       390       400       410       420
pF1KSD SPHDVLETIFVRKVGAFVNKPINQVTLTSLDIPFAMFAPKNLELEDTDPMVNPPDSPETE
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_016 SPHDVLETIFVRKVGAFVNKPINQVTLTSLDIPFAMFAPKNLELEDTDPMVNPPDSPETE
              370       380       390       400       410       420

              430       440       450       460       470       480
pF1KSD SPLQGSLHSDGSSGGSSGNTHDDFVMIDFKPAFSKDDILPMDLGTFYREFQNPPQLSSLS
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_016 SPLQGSLHSDGSSGGSSGNTHDDFVMIDFKPAFSKDDILPMDLGTFYREFQNPPQLSSLS
              430       440       450       460       470       480

              490       500       510       
pF1KSD IDIGAQSMAEDLDSLPEKLAVHEKNVREFDAFVETLQ
       :::::::::::::::::::::::::::::::::::::
XP_016 IDIGAQSMAEDLDSLPEKLAVHEKNVREFDAFVETLQ
              490       500       510       

>>NP_001333252 (OMIM: 615088) autophagy-related protein   (517 aa)
 initn: 3419 init1: 3419 opt: 3419  Z-score: 3289.7  bits: 618.3 E(85289): 1.7e-176
Smith-Waterman score: 3419; 100.0% identity (100.0% similar) in 517 aa overlap (1-517:1-517)

               10        20        30        40        50        60
pF1KSD METDLNSQDRKDLDKFIKFFALKTVQVIVQARLGEKICTRSSSSPTGSDWFNLAIKDIPE
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 METDLNSQDRKDLDKFIKFFALKTVQVIVQARLGEKICTRSSSSPTGSDWFNLAIKDIPE
               10        20        30        40        50        60

               70        80        90       100       110       120
pF1KSD VTHEAKKALAGQLPAVGRSMCVEISLKTSEGDSMELEIWCLEMNEKCDKEIKVSYTVYNR
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 VTHEAKKALAGQLPAVGRSMCVEISLKTSEGDSMELEIWCLEMNEKCDKEIKVSYTVYNR
               70        80        90       100       110       120

              130       140       150       160       170       180
pF1KSD LSLLLKSLLAITRVTPAYRLSRKQGHEYVILYRIYFGEVQLSGLGEGFQTVRVGTVGTPV
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 LSLLLKSLLAITRVTPAYRLSRKQGHEYVILYRIYFGEVQLSGLGEGFQTVRVGTVGTPV
              130       140       150       160       170       180

              190       200       210       220       230       240
pF1KSD GTITLSCAYRINLAFMSTRQFERTPPIMGIIIDHFVDRPYPSSSPMHPCNYRTAGEDTGV
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 GTITLSCAYRINLAFMSTRQFERTPPIMGIIIDHFVDRPYPSSSPMHPCNYRTAGEDTGV
              190       200       210       220       230       240

              250       260       270       280       290       300
pF1KSD IYPSVEDSQEVCTTSFSTSPPSQLSSSRLSYQPAALGVGSADLAYPVVFAAGLNATHPHQ
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 IYPSVEDSQEVCTTSFSTSPPSQLSSSRLSYQPAALGVGSADLAYPVVFAAGLNATHPHQ
              250       260       270       280       290       300

              310       320       330       340       350       360
pF1KSD LMVPGKEGGVPLAPNQPVHGTQADQERLATCTPSDRTHCAATPSSSEDTETVSNSSEGRA
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 LMVPGKEGGVPLAPNQPVHGTQADQERLATCTPSDRTHCAATPSSSEDTETVSNSSEGRA
              310       320       330       340       350       360

              370       380       390       400       410       420
pF1KSD SPHDVLETIFVRKVGAFVNKPINQVTLTSLDIPFAMFAPKNLELEDTDPMVNPPDSPETE
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 SPHDVLETIFVRKVGAFVNKPINQVTLTSLDIPFAMFAPKNLELEDTDPMVNPPDSPETE
              370       380       390       400       410       420

              430       440       450       460       470       480
pF1KSD SPLQGSLHSDGSSGGSSGNTHDDFVMIDFKPAFSKDDILPMDLGTFYREFQNPPQLSSLS
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 SPLQGSLHSDGSSGGSSGNTHDDFVMIDFKPAFSKDDILPMDLGTFYREFQNPPQLSSLS
              430       440       450       460       470       480

              490       500       510       
pF1KSD IDIGAQSMAEDLDSLPEKLAVHEKNVREFDAFVETLQ
       :::::::::::::::::::::::::::::::::::::
NP_001 IDIGAQSMAEDLDSLPEKLAVHEKNVREFDAFVETLQ
              490       500       510       




517 residues in 1 query   sequences
60827320 residues in 85289 library sequences
 Tcomplib [36.3.4 Apr, 2011] (8 proc)
 start: Thu Nov  3 02:30:56 2016 done: Thu Nov  3 02:30:57 2016
 Total Scan time:  8.900 Total Display time:  0.090

Function used was FASTA [36.3.4 Apr, 2011]
Inquiries or Suggestions ?
Send a message to flexiclone AT kazusagt.com