Result of FASTA (ccds) for pF1KSDA0652
FASTA searches a protein or DNA sequence data bank 36.3.4 Apr, 2011
Please cite:
W.R. Pearson & D.J. Lipman PNAS (1988) 85:2444-2448

Query: pF1KSDA0652, 517 aa
  1>>>pF1KSDA0652 517 - 517 aa - 517 aa
Library: human.CCDS.faa
  18511270 residues in 32554 sequences

Statistics:  Expectation_n fit: rho(ln(x))= 6.8680+/-0.000845; mu= 10.9693+/- 0.051
 mean_var=97.3423+/-19.748, 0's: 0 Z-trim(108.7): 17  B-trim: 39 in 1/51
 Lambda= 0.129994
 statistics sampled from 10385 (10392) to 10385 sequences
Algorithm: FASTA (3.7 Nov 2010) [optimized]
Parameters: BL50 matrix (15:-5), open/ext: -10/-2
 ktup: 2, E-join: 1 (0.689), E-opt: 0.2 (0.319), width:  16
 Scan time:  2.870

The best scores are:                                      opt bits E(32554)
CCDS44582.1 ATG13 gene_id:9776|Hs108|chr11         ( 517) 3419 651.6 6.1e-187
CCDS55760.1 ATG13 gene_id:9776|Hs108|chr11         ( 550) 1744 337.5 2.4e-92
CCDS7921.1 ATG13 gene_id:9776|Hs108|chr11          ( 480) 1738 336.3 4.6e-92
CCDS55761.1 ATG13 gene_id:9776|Hs108|chr11         ( 401) 1470 286.1 5.2e-77


>>CCDS44582.1 ATG13 gene_id:9776|Hs108|chr11              (517 aa)
 initn: 3419 init1: 3419 opt: 3419  Z-score: 3469.7  bits: 651.6 E(32554): 6.1e-187
Smith-Waterman score: 3419; 100.0% identity (100.0% similar) in 517 aa overlap (1-517:1-517)

               10        20        30        40        50        60
pF1KSD METDLNSQDRKDLDKFIKFFALKTVQVIVQARLGEKICTRSSSSPTGSDWFNLAIKDIPE
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS44 METDLNSQDRKDLDKFIKFFALKTVQVIVQARLGEKICTRSSSSPTGSDWFNLAIKDIPE
               10        20        30        40        50        60

               70        80        90       100       110       120
pF1KSD VTHEAKKALAGQLPAVGRSMCVEISLKTSEGDSMELEIWCLEMNEKCDKEIKVSYTVYNR
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS44 VTHEAKKALAGQLPAVGRSMCVEISLKTSEGDSMELEIWCLEMNEKCDKEIKVSYTVYNR
               70        80        90       100       110       120

              130       140       150       160       170       180
pF1KSD LSLLLKSLLAITRVTPAYRLSRKQGHEYVILYRIYFGEVQLSGLGEGFQTVRVGTVGTPV
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS44 LSLLLKSLLAITRVTPAYRLSRKQGHEYVILYRIYFGEVQLSGLGEGFQTVRVGTVGTPV
              130       140       150       160       170       180

              190       200       210       220       230       240
pF1KSD GTITLSCAYRINLAFMSTRQFERTPPIMGIIIDHFVDRPYPSSSPMHPCNYRTAGEDTGV
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS44 GTITLSCAYRINLAFMSTRQFERTPPIMGIIIDHFVDRPYPSSSPMHPCNYRTAGEDTGV
              190       200       210       220       230       240

              250       260       270       280       290       300
pF1KSD IYPSVEDSQEVCTTSFSTSPPSQLSSSRLSYQPAALGVGSADLAYPVVFAAGLNATHPHQ
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS44 IYPSVEDSQEVCTTSFSTSPPSQLSSSRLSYQPAALGVGSADLAYPVVFAAGLNATHPHQ
              250       260       270       280       290       300

              310       320       330       340       350       360
pF1KSD LMVPGKEGGVPLAPNQPVHGTQADQERLATCTPSDRTHCAATPSSSEDTETVSNSSEGRA
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS44 LMVPGKEGGVPLAPNQPVHGTQADQERLATCTPSDRTHCAATPSSSEDTETVSNSSEGRA
              310       320       330       340       350       360

              370       380       390       400       410       420
pF1KSD SPHDVLETIFVRKVGAFVNKPINQVTLTSLDIPFAMFAPKNLELEDTDPMVNPPDSPETE
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS44 SPHDVLETIFVRKVGAFVNKPINQVTLTSLDIPFAMFAPKNLELEDTDPMVNPPDSPETE
              370       380       390       400       410       420

              430       440       450       460       470       480
pF1KSD SPLQGSLHSDGSSGGSSGNTHDDFVMIDFKPAFSKDDILPMDLGTFYREFQNPPQLSSLS
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS44 SPLQGSLHSDGSSGGSSGNTHDDFVMIDFKPAFSKDDILPMDLGTFYREFQNPPQLSSLS
              430       440       450       460       470       480

              490       500       510       
pF1KSD IDIGAQSMAEDLDSLPEKLAVHEKNVREFDAFVETLQ
       :::::::::::::::::::::::::::::::::::::
CCDS44 IDIGAQSMAEDLDSLPEKLAVHEKNVREFDAFVETLQ
              490       500       510       

>>CCDS55760.1 ATG13 gene_id:9776|Hs108|chr11              (550 aa)
 initn: 1733 init1: 1733 opt: 1744  Z-score: 1771.5  bits: 337.5 E(32554): 2.4e-92
Smith-Waterman score: 3343; 94.0% identity (94.0% similar) in 550 aa overlap (1-517:1-550)

               10        20        30        40        50        60
pF1KSD METDLNSQDRKDLDKFIKFFALKTVQVIVQARLGEKICTRSSSSPTGSDWFNLAIKDIPE
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS55 METDLNSQDRKDLDKFIKFFALKTVQVIVQARLGEKICTRSSSSPTGSDWFNLAIKDIPE
               10        20        30        40        50        60

               70        80        90       100       110       120
pF1KSD VTHEAKKALAGQLPAVGRSMCVEISLKTSEGDSMELEIWCLEMNEKCDKEIKVSYTVYNR
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS55 VTHEAKKALAGQLPAVGRSMCVEISLKTSEGDSMELEIWCLEMNEKCDKEIKVSYTVYNR
               70        80        90       100       110       120

              130       140       150       160       170       180
pF1KSD LSLLLKSLLAITRVTPAYRLSRKQGHEYVILYRIYFGEVQLSGLGEGFQTVRVGTVGTPV
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS55 LSLLLKSLLAITRVTPAYRLSRKQGHEYVILYRIYFGEVQLSGLGEGFQTVRVGTVGTPV
              130       140       150       160       170       180

              190       200       210       220       230       240
pF1KSD GTITLSCAYRINLAFMSTRQFERTPPIMGIIIDHFVDRPYPSSSPMHPCNYRTAGEDTGV
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS55 GTITLSCAYRINLAFMSTRQFERTPPIMGIIIDHFVDRPYPSSSPMHPCNYRTAGEDTGV
              190       200       210       220       230       240

              250       260                                        
pF1KSD IYPSVEDSQEVCTTSFSTSPPSQ---------------------------------LSSS
       :::::::::::::::::::::::                                 ::::
CCDS55 IYPSVEDSQEVCTTSFSTSPPSQCVFTVTKAHFQTPTPVVTDTLRVPMAGLAFSHQLSSS
              250       260       270       280       290       300

       270       280       290       300       310       320       
pF1KSD RLSYQPAALGVGSADLAYPVVFAAGLNATHPHQLMVPGKEGGVPLAPNQPVHGTQADQER
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS55 RLSYQPAALGVGSADLAYPVVFAAGLNATHPHQLMVPGKEGGVPLAPNQPVHGTQADQER
              310       320       330       340       350       360

       330       340       350       360       370       380       
pF1KSD LATCTPSDRTHCAATPSSSEDTETVSNSSEGRASPHDVLETIFVRKVGAFVNKPINQVTL
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS55 LATCTPSDRTHCAATPSSSEDTETVSNSSEGRASPHDVLETIFVRKVGAFVNKPINQVTL
              370       380       390       400       410       420

       390       400       410       420       430       440       
pF1KSD TSLDIPFAMFAPKNLELEDTDPMVNPPDSPETESPLQGSLHSDGSSGGSSGNTHDDFVMI
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS55 TSLDIPFAMFAPKNLELEDTDPMVNPPDSPETESPLQGSLHSDGSSGGSSGNTHDDFVMI
              430       440       450       460       470       480

       450       460       470       480       490       500       
pF1KSD DFKPAFSKDDILPMDLGTFYREFQNPPQLSSLSIDIGAQSMAEDLDSLPEKLAVHEKNVR
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS55 DFKPAFSKDDILPMDLGTFYREFQNPPQLSSLSIDIGAQSMAEDLDSLPEKLAVHEKNVR
              490       500       510       520       530       540

       510       
pF1KSD EFDAFVETLQ
       ::::::::::
CCDS55 EFDAFVETLQ
              550

>>CCDS7921.1 ATG13 gene_id:9776|Hs108|chr11               (480 aa)
 initn: 1738 init1: 1738 opt: 1738  Z-score: 1766.4  bits: 336.3 E(32554): 4.6e-92
Smith-Waterman score: 3096; 92.8% identity (92.8% similar) in 517 aa overlap (1-517:1-480)

               10        20        30        40        50        60
pF1KSD METDLNSQDRKDLDKFIKFFALKTVQVIVQARLGEKICTRSSSSPTGSDWFNLAIKDIPE
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS79 METDLNSQDRKDLDKFIKFFALKTVQVIVQARLGEKICTRSSSSPTGSDWFNLAIKDIPE
               10        20        30        40        50        60

               70        80        90       100       110       120
pF1KSD VTHEAKKALAGQLPAVGRSMCVEISLKTSEGDSMELEIWCLEMNEKCDKEIKVSYTVYNR
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS79 VTHEAKKALAGQLPAVGRSMCVEISLKTSEGDSMELEIWCLEMNEKCDKEIKVSYTVYNR
               70        80        90       100       110       120

              130       140       150       160       170       180
pF1KSD LSLLLKSLLAITRVTPAYRLSRKQGHEYVILYRIYFGEVQLSGLGEGFQTVRVGTVGTPV
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS79 LSLLLKSLLAITRVTPAYRLSRKQGHEYVILYRIYFGEVQLSGLGEGFQTVRVGTVGTPV
              130       140       150       160       170       180

              190       200       210       220       230       240
pF1KSD GTITLSCAYRINLAFMSTRQFERTPPIMGIIIDHFVDRPYPSSSPMHPCNYRTAGEDTGV
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS79 GTITLSCAYRINLAFMSTRQFERTPPIMGIIIDHFVDRPYPSSSPMHPCNYRTAGEDTGV
              190       200       210       220       230       240

              250       260       270       280       290       300
pF1KSD IYPSVEDSQEVCTTSFSTSPPSQLSSSRLSYQPAALGVGSADLAYPVVFAAGLNATHPHQ
       ::::::::::::::::::::::::                                    
CCDS79 IYPSVEDSQEVCTTSFSTSPPSQL------------------------------------
              250       260                                        

              310       320       330       340       350       360
pF1KSD LMVPGKEGGVPLAPNQPVHGTQADQERLATCTPSDRTHCAATPSSSEDTETVSNSSEGRA
        :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS79 -MVPGKEGGVPLAPNQPVHGTQADQERLATCTPSDRTHCAATPSSSEDTETVSNSSEGRA
           270       280       290       300       310       320   

              370       380       390       400       410       420
pF1KSD SPHDVLETIFVRKVGAFVNKPINQVTLTSLDIPFAMFAPKNLELEDTDPMVNPPDSPETE
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS79 SPHDVLETIFVRKVGAFVNKPINQVTLTSLDIPFAMFAPKNLELEDTDPMVNPPDSPETE
           330       340       350       360       370       380   

              430       440       450       460       470       480
pF1KSD SPLQGSLHSDGSSGGSSGNTHDDFVMIDFKPAFSKDDILPMDLGTFYREFQNPPQLSSLS
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS79 SPLQGSLHSDGSSGGSSGNTHDDFVMIDFKPAFSKDDILPMDLGTFYREFQNPPQLSSLS
           390       400       410       420       430       440   

              490       500       510       
pF1KSD IDIGAQSMAEDLDSLPEKLAVHEKNVREFDAFVETLQ
       :::::::::::::::::::::::::::::::::::::
CCDS79 IDIGAQSMAEDLDSLPEKLAVHEKNVREFDAFVETLQ
           450       460       470       480

>>CCDS55761.1 ATG13 gene_id:9776|Hs108|chr11              (401 aa)
 initn: 1468 init1: 1468 opt: 1470  Z-score: 1496.0  bits: 286.1 E(32554): 5.2e-77
Smith-Waterman score: 2587; 91.6% identity (91.6% similar) in 438 aa overlap (80-517:1-401)

      50        60        70        80        90       100         
pF1KSD WFNLAIKDIPEVTHEAKKALAGQLPAVGRSMCVEISLKTSEGDSMELEIWCLEMNEKCDK
                                     ::::::::::::::::::::::::::::::
CCDS55                               MCVEISLKTSEGDSMELEIWCLEMNEKCDK
                                             10        20        30

     110       120       130       140       150       160         
pF1KSD EIKVSYTVYNRLSLLLKSLLAITRVTPAYRLSRKQGHEYVILYRIYFGEVQLSGLGEGFQ
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS55 EIKVSYTVYNRLSLLLKSLLAITRVTPAYRLSRKQGHEYVILYRIYFGEVQLSGLGEGFQ
               40        50        60        70        80        90

     170       180       190       200       210       220         
pF1KSD TVRVGTVGTPVGTITLSCAYRINLAFMSTRQFERTPPIMGIIIDHFVDRPYPSSSPMHPC
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS55 TVRVGTVGTPVGTITLSCAYRINLAFMSTRQFERTPPIMGIIIDHFVDRPYPSSSPMHPC
              100       110       120       130       140       150

     230       240       250       260       270       280         
pF1KSD NYRTAGEDTGVIYPSVEDSQEVCTTSFSTSPPSQLSSSRLSYQPAALGVGSADLAYPVVF
       :::::::::::::::::::::::::::::::::::                         
CCDS55 NYRTAGEDTGVIYPSVEDSQEVCTTSFSTSPPSQL-------------------------
              160       170       180                              

     290       300       310       320       330       340         
pF1KSD AAGLNATHPHQLMVPGKEGGVPLAPNQPVHGTQADQERLATCTPSDRTHCAATPSSSEDT
                   ::::::::::::::::::::::::::::::::::::::::::::::::
CCDS55 ------------MVPGKEGGVPLAPNQPVHGTQADQERLATCTPSDRTHCAATPSSSEDT
                     190       200       210       220       230   

     350       360       370       380       390       400         
pF1KSD ETVSNSSEGRASPHDVLETIFVRKVGAFVNKPINQVTLTSLDIPFAMFAPKNLELEDTDP
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS55 ETVSNSSEGRASPHDVLETIFVRKVGAFVNKPINQVTLTSLDIPFAMFAPKNLELEDTDP
           240       250       260       270       280       290   

     410       420       430       440       450       460         
pF1KSD MVNPPDSPETESPLQGSLHSDGSSGGSSGNTHDDFVMIDFKPAFSKDDILPMDLGTFYRE
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS55 MVNPPDSPETESPLQGSLHSDGSSGGSSGNTHDDFVMIDFKPAFSKDDILPMDLGTFYRE
           300       310       320       330       340       350   

     470       480       490       500       510       
pF1KSD FQNPPQLSSLSIDIGAQSMAEDLDSLPEKLAVHEKNVREFDAFVETLQ
       ::::::::::::::::::::::::::::::::::::::::::::::::
CCDS55 FQNPPQLSSLSIDIGAQSMAEDLDSLPEKLAVHEKNVREFDAFVETLQ
           360       370       380       390       400 




517 residues in 1 query   sequences
18511270 residues in 32554 library sequences
 Tcomplib [36.3.4 Apr, 2011] (8 proc)
 start: Thu Nov  3 02:30:55 2016 done: Thu Nov  3 02:30:56 2016
 Total Scan time:  2.870 Total Display time:  0.030

Function used was FASTA [36.3.4 Apr, 2011]
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