hmmpfam - search one or more sequences against HMM database
HMMER 2.3.2 (Oct 2003)
Copyright (C) 1992-2003 HHMI/Washington University School of Medicine
Freely distributed under the GNU General Public License (GPL)
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HMM file: /data/Pfam.bin
Sequence file: /tmp/20080305/iprscan-20080305-17384170/chunk_1/iprscan-20080305-17384170.nocrc
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Query sequence: pF1KSDA0638
Accession: [none]
Description: [none]
Scores for sequence family classification (score includes all domains):
Model Description Score E-value N
-------- ----------- ----- ------- ---
PF00169.19.fs PH domain 70.1 7e-21 1
PF00169.19.ls PH domain 72.1 1.6e-18 1
PF00498.16.fs FHA domain 47.6 1.8e-13 1
PF00498.16.ls FHA domain 49.3 1.2e-11 1
Parsed for domains:
Model Domain seq-f seq-t hmm-f hmm-t score E-value
-------- ------- ----- ----- ----- ----- ----- -------
PF00498.16.fs 1/1 64 125 .. 1 94 [] 47.6 1.8e-13
PF00498.16.ls 1/1 64 125 .. 1 94 [] 49.3 1.2e-11
PF00169.19.fs 1/1 1257 1370 .. 1 92 [] 70.1 7e-21
PF00169.19.ls 1/1 1257 1370 .. 1 92 [] 72.1 1.6e-18
Alignments of top-scoring domains:
PF00498.16.fs: domain 1 of 1, from 64 to 125: score 47.6, E = 1.8e-13
*->vtiGRdsdsddilldddqdiqldgsiSrrHaeieykdggvglelafr
++iG+ ++ di+l+ + g ++++H+ ie+ g+
pF1KSDA063 64 TVIGS--AARDISLQGP------G-LAPEHCYIENLRGTL------- 94
paqvkefgvylrDlssknlnGatfvNgkrlgngepvrLksGdvirlG<-*
+l+++++++ ++g ++ +p+rL++G++++lG
pF1KSDA063 95 ---------TLYPCGNAC-----TIDGLPV--RQPTRLTQGCMLCLG 125
PF00498.16.ls: domain 1 of 1, from 64 to 125: score 49.3, E = 1.2e-11
*->vtiGRdsdsddilldddqdiqldgsiSrrHaeieykdggvglelafr
++iG+ ++ di+l+ + g ++++H+ ie+ g+
pF1KSDA063 64 TVIGS--AARDISLQGP------G-LAPEHCYIENLRGTL------- 94
paqvkefgvylrDlssknlnGatfvNgkrlgngepvrLksGdvirlG<-*
+l+++++++ ++g ++ +p+rL++G++++lG
pF1KSDA063 95 ---------TLYPCGNAC-----TIDGLPV--RQPTRLTQGCMLCLG 125
PF00169.19.fs: domain 1 of 1, from 1257 to 1370: score 70.1, E = 7e-21
*->vikeGwLlkkg.gkkswkkRyfvLfd..dvLlyykdkk.kkpkgsip
+++G+L k+g+++kswkkR+fv+ + +++L+yy dk++ k+kg+i
pF1KSDA063 1257 KVCRGYLVKMGgKIKSWKKRWFVFDRlkRTLSYYVDKHeTKLKGVIY 1303
Lsgi.qvtkvpdn.................krkncFeirt.dretlllqa
+ i++v+++ + +++ + + +++++ +F+++t+dr ++ a
pF1KSDA063 1304 FQAIeEVYYDHLRsaakkrffrftmvtespNPALTFCVKThDR-LYYMVA 1352
eseeerkeWvkaiqsair<-*
+s+e ++ W++ i +
pF1KSDA063 1353 PSAEAMRIWMDVIVTGAE 1370
PF00169.19.ls: domain 1 of 1, from 1257 to 1370: score 72.1, E = 1.6e-18
*->vikeGwLlkkg.gkkswkkRyfvLfd..dvLlyykdkk.kkpkgsip
+++G+L k+g+++kswkkR+fv+ + +++L+yy dk++ k+kg+i
pF1KSDA063 1257 KVCRGYLVKMGgKIKSWKKRWFVFDRlkRTLSYYVDKHeTKLKGVIY 1303
Lsgi.qvtkvpdn.................krkncFeirt.dretlllqa
+ i++v+++ + +++ + + +++++ +F+++t+dr ++ a
pF1KSDA063 1304 FQAIeEVYYDHLRsaakkrffrftmvtespNPALTFCVKThDR-LYYMVA 1352
eseeerkeWvkaiqsair<-*
+s+e ++ W++ i +
pF1KSDA063 1353 PSAEAMRIWMDVIVTGAE 1370
//