FASTA searches a protein or DNA sequence data bank 36.3.4 Apr, 2011
Please cite:
W.R. Pearson & D.J. Lipman PNAS (1988) 85:2444-2448

Query: pF1KSDA0410, 485 aa
  1>>>pF1KSDA0410 485 - 485 aa - 485 aa
Library: human.CCDS.faa
  18511270 residues in 32554 sequences

Statistics:  Expectation_n fit: rho(ln(x))= 9.3056+/-0.00107; mu= -0.5536+/- 0.064
 mean_var=187.9817+/-39.923, 0's: 0 Z-trim(109.3): 32  B-trim: 0 in 0/51
 Lambda= 0.093544
 statistics sampled from 10760 (10786) to 10760 sequences
Algorithm: FASTA (3.7 Nov 2010) [optimized]
Parameters: BL50 matrix (15:-5), open/ext: -10/-2
 ktup: 2, E-join: 1 (0.68), E-opt: 0.2 (0.331), width:  16
 Scan time:  3.170

The best scores are:                                      opt bits E(32554)
CCDS9314.1 NUP58 gene_id:9818|Hs108|chr13          ( 599) 2996 416.9 2.9e-116
CCDS31949.1 NUP58 gene_id:9818|Hs108|chr13         ( 587) 2465 345.3 1.1e-94


>>CCDS9314.1 NUP58 gene_id:9818|Hs108|chr13               (599 aa)
 initn: 2996 init1: 2996 opt: 2996  Z-score: 2200.8  bits: 416.9 E(32554): 2.9e-116
Smith-Waterman score: 2996; 100.0% identity (100.0% similar) in 479 aa overlap (1-479:1-479)

               10        20        30        40        50        60
pF1KSD MSTGFSFGSGTLGSTTVAAGGTSTGGVFSFGTGASSNPSVGLNFGNLGSTSTPATTSAPS
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS93 MSTGFSFGSGTLGSTTVAAGGTSTGGVFSFGTGASSNPSVGLNFGNLGSTSTPATTSAPS
               10        20        30        40        50        60

               70        80        90       100       110       120
pF1KSD SGFGTGLFGSKPATGFTLGGTNTGIATTITTGLTLGTPATTSAATTGFSLGFNKPAASAT
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS93 SGFGTGLFGSKPATGFTLGGTNTGIATTITTGLTLGTPATTSAATTGFSLGFNKPAASAT
               70        80        90       100       110       120

              130       140       150       160       170       180
pF1KSD PFALPITSTSASGLTLSSALTSTPAASTGFTLNNLGGTTATTTTASTGLSLGGALAGLGG
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS93 PFALPITSTSASGLTLSSALTSTPAASTGFTLNNLGGTTATTTTASTGLSLGGALAGLGG
              130       140       150       160       170       180

              190       200       210       220       230       240
pF1KSD SLFQSTNTGTSGLGQNALGLTLGTTAATSTAGNEGLGGIDFSSSSDKKSDKTGTRPEDSK
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS93 SLFQSTNTGTSGLGQNALGLTLGTTAATSTAGNEGLGGIDFSSSSDKKSDKTGTRPEDSK
              190       200       210       220       230       240

              250       260       270       280       290       300
pF1KSD ALKDENLPPVICQDVENLQKFVKEQKQVQEEISRMSSKAMLKVQEDIKALKQLLSLAANG
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS93 ALKDENLPPVICQDVENLQKFVKEQKQVQEEISRMSSKAMLKVQEDIKALKQLLSLAANG
              250       260       270       280       290       300

              310       320       330       340       350       360
pF1KSD IQRNTLNIDKLKIETAQELKNAEIALRTQKTPPGLQHEYAAPADYFRILVQQFEVQLQQY
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS93 IQRNTLNIDKLKIETAQELKNAEIALRTQKTPPGLQHEYAAPADYFRILVQQFEVQLQQY
              310       320       330       340       350       360

              370       380       390       400       410       420
pF1KSD RQQIEELENHLATQANNSHITPQDLSMAMQKIYQTFVALAAQLQSIHENVKVLKEQYLGY
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS93 RQQIEELENHLATQANNSHITPQDLSMAMQKIYQTFVALAAQLQSIHENVKVLKEQYLGY
              370       380       390       400       410       420

              430       440       450       460       470       480
pF1KSD RKMFLGDAVDVFETRRAEAKKWQNTPRVTTGPTPFSTMPNAAAVAMAATLTQQQQPATGL
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: 
CCDS93 RKMFLGDAVDVFETRRAEAKKWQNTPRVTTGPTPFSTMPNAAAVAMAATLTQQQQPATGP
              430       440       450       460       470       480

                                                                   
pF1KSD NAFKL                                                       
                                                                   
CCDS93 QPSLGVSFGTPFGSGIGTGLQSSGLGSSNLGGFGTSSGFGCSTTGASTFGFGTTNKPSGS
              490       500       510       520       530       540

>>CCDS31949.1 NUP58 gene_id:9818|Hs108|chr13              (587 aa)
 initn: 2406 init1: 2406 opt: 2465  Z-score: 1813.6  bits: 345.3 E(32554): 1.1e-94
Smith-Waterman score: 2896; 97.5% identity (97.5% similar) in 479 aa overlap (1-479:1-467)

               10        20        30        40        50        60
pF1KSD MSTGFSFGSGTLGSTTVAAGGTSTGGVFSFGTGASSNPSVGLNFGNLGSTSTPATTSAPS
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS31 MSTGFSFGSGTLGSTTVAAGGTSTGGVFSFGTGASSNPSVGLNFGNLGSTSTPATTSAPS
               10        20        30        40        50        60

               70        80        90       100       110       120
pF1KSD SGFGTGLFGSKPATGFTLGGTNTGIATTITTGLTLGTPATTSAATTGFSLGFNKPAASAT
       ::::::::::::::::::::::::            ::::::::::::::::::::::::
CCDS31 SGFGTGLFGSKPATGFTLGGTNTG------------TPATTSAATTGFSLGFNKPAASAT
               70        80                    90       100        

              130       140       150       160       170       180
pF1KSD PFALPITSTSASGLTLSSALTSTPAASTGFTLNNLGGTTATTTTASTGLSLGGALAGLGG
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS31 PFALPITSTSASGLTLSSALTSTPAASTGFTLNNLGGTTATTTTASTGLSLGGALAGLGG
      110       120       130       140       150       160        

              190       200       210       220       230       240
pF1KSD SLFQSTNTGTSGLGQNALGLTLGTTAATSTAGNEGLGGIDFSSSSDKKSDKTGTRPEDSK
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS31 SLFQSTNTGTSGLGQNALGLTLGTTAATSTAGNEGLGGIDFSSSSDKKSDKTGTRPEDSK
      170       180       190       200       210       220        

              250       260       270       280       290       300
pF1KSD ALKDENLPPVICQDVENLQKFVKEQKQVQEEISRMSSKAMLKVQEDIKALKQLLSLAANG
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS31 ALKDENLPPVICQDVENLQKFVKEQKQVQEEISRMSSKAMLKVQEDIKALKQLLSLAANG
      230       240       250       260       270       280        

              310       320       330       340       350       360
pF1KSD IQRNTLNIDKLKIETAQELKNAEIALRTQKTPPGLQHEYAAPADYFRILVQQFEVQLQQY
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS31 IQRNTLNIDKLKIETAQELKNAEIALRTQKTPPGLQHEYAAPADYFRILVQQFEVQLQQY
      290       300       310       320       330       340        

              370       380       390       400       410       420
pF1KSD RQQIEELENHLATQANNSHITPQDLSMAMQKIYQTFVALAAQLQSIHENVKVLKEQYLGY
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS31 RQQIEELENHLATQANNSHITPQDLSMAMQKIYQTFVALAAQLQSIHENVKVLKEQYLGY
      350       360       370       380       390       400        

              430       440       450       460       470       480
pF1KSD RKMFLGDAVDVFETRRAEAKKWQNTPRVTTGPTPFSTMPNAAAVAMAATLTQQQQPATGL
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: 
CCDS31 RKMFLGDAVDVFETRRAEAKKWQNTPRVTTGPTPFSTMPNAAAVAMAATLTQQQQPATGP
      410       420       430       440       450       460        

                                                                   
pF1KSD NAFKL                                                       
                                                                   
CCDS31 QPSLGVSFGTPFGSGIGTGLQSSGLGSSNLGGFGTSSGFGCSTTGASTFGFGTTNKPSGS
      470       480       490       500       510       520        




485 residues in 1 query   sequences
18511270 residues in 32554 library sequences
 Tcomplib [36.3.4 Apr, 2011] (8 proc)
 start: Thu Nov  3 01:37:59 2016 done: Thu Nov  3 01:38:00 2016
 Total Scan time:  3.170 Total Display time:  0.010

Function used was FASTA [36.3.4 Apr, 2011]