Result of FASTA (ccds) for pF1KSDA0248
FASTA searches a protein or DNA sequence data bank 36.3.4 Apr, 2011
Please cite:
W.R. Pearson & D.J. Lipman PNAS (1988) 85:2444-2448

Query: pF1KSDA0248, 1859 aa
  1>>>pF1KSDA0248 1859 - 1859 aa - 1859 aa
Library: human.CCDS.faa
  18511270 residues in 32554 sequences

Statistics:  Expectation_n fit: rho(ln(x))= 10.7943+/-0.00119; mu= 0.3085+/- 0.072
 mean_var=310.0495+/-64.616, 0's: 0 Z-trim(110.4): 37  B-trim: 135 in 1/53
 Lambda= 0.072838
 statistics sampled from 11563 (11589) to 11563 sequences
Algorithm: FASTA (3.7 Nov 2010) [optimized]
Parameters: BL50 matrix (15:-5), open/ext: -10/-2
 ktup: 2, E-join: 1 (0.674), E-opt: 0.2 (0.356), width:  16
 Scan time:  7.010

The best scores are:                                      opt bits E(32554)
CCDS7533.1 GBF1 gene_id:8729|Hs108|chr10           (1859) 12326 1310.7       0
CCDS5346.1 CYTH3 gene_id:9265|Hs108|chr7           ( 399)  508 68.4 6.3e-11


>>CCDS7533.1 GBF1 gene_id:8729|Hs108|chr10                (1859 aa)
 initn: 12326 init1: 12326 opt: 12326  Z-score: 7011.9  bits: 1310.7 E(32554):    0
Smith-Waterman score: 12326; 99.9% identity (100.0% similar) in 1859 aa overlap (1-1859:1-1859)

               10        20        30        40        50        60
pF1KSD MVDKNIYIIQGEINIVVGAIKRNSRWSTHTPLDEERDPLLHSFGHLKEVLNSITELSEIE
       :::::::::::::::::::::::.::::::::::::::::::::::::::::::::::::
CCDS75 MVDKNIYIIQGEINIVVGAIKRNARWSTHTPLDEERDPLLHSFGHLKEVLNSITELSEIE
               10        20        30        40        50        60

               70        80        90       100       110       120
pF1KSD PNVFLRPFLEVIRSEDTTGPITGLALTSVNKFLSYALIDPTHEGTAEGMENMADAVTHAR
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS75 PNVFLRPFLEVIRSEDTTGPITGLALTSVNKFLSYALIDPTHEGTAEGMENMADAVTHAR
               70        80        90       100       110       120

              130       140       150       160       170       180
pF1KSD FVGTDPASDEVVLMKILQVLRTLLLTPVGAHLTNESVCEIMQSCFRICFEMRLSELLRKS
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS75 FVGTDPASDEVVLMKILQVLRTLLLTPVGAHLTNESVCEIMQSCFRICFEMRLSELLRKS
              130       140       150       160       170       180

              190       200       210       220       230       240
pF1KSD AEHTLVDMVQLLFTRLPQFKEEPKNYVGTNMKKLKMRAGGMSDSSKWKKQKRSPRPPRHM
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS75 AEHTLVDMVQLLFTRLPQFKEEPKNYVGTNMKKLKMRAGGMSDSSKWKKQKRSPRPPRHM
              190       200       210       220       230       240

              250       260       270       280       290       300
pF1KSD TKVTPGSELPTPNGTTLSSNLTGGMPFIDVPTPISSASSEAASAVVSPSTDSGLEFSSQT
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS75 TKVTPGSELPTPNGTTLSSNLTGGMPFIDVPTPISSASSEAASAVVSPSTDSGLEFSSQT
              250       260       270       280       290       300

              310       320       330       340       350       360
pF1KSD TSKEDLTDLEQPGSPGYSTATEPGSSELGVPEQPDLQEGTHVEKSQSASVESIPEVLEEC
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS75 TSKEDLTDLEQPGSPGYSTATEPGSSELGVPEQPDLQEGTHVEKSQSASVESIPEVLEEC
              310       320       330       340       350       360

              370       380       390       400       410       420
pF1KSD TSPADHSDSASVHDMDYVNPRGVRFTQSSQKEGTALVPYGLPCIRELFRFLISLTNPHDR
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS75 TSPADHSDSASVHDMDYVNPRGVRFTQSSQKEGTALVPYGLPCIRELFRFLISLTNPHDR
              370       380       390       400       410       420

              430       440       450       460       470       480
pF1KSD HNSEVMIHMGLHLLTVALESAPVAQCQTLLGLIKDEMCRHLFQLLSIERLNLYAASLRVC
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS75 HNSEVMIHMGLHLLTVALESAPVAQCQTLLGLIKDEMCRHLFQLLSIERLNLYAASLRVC
              430       440       450       460       470       480

              490       500       510       520       530       540
pF1KSD FLLFESMREHLKFQMEMYIKKLMEIITVENPKMPYEMKEMALEAIVQLWRIPSFVTELYI
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS75 FLLFESMREHLKFQMEMYIKKLMEIITVENPKMPYEMKEMALEAIVQLWRIPSFVTELYI
              490       500       510       520       530       540

              550       560       570       580       590       600
pF1KSD NYDCDYYCSNLFEELTKLLSKNAFPVSGQLYTTHLLSLDALLTVIDSTEAHCQAKVLNSL
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS75 NYDCDYYCSNLFEELTKLLSKNAFPVSGQLYTTHLLSLDALLTVIDSTEAHCQAKVLNSL
              550       560       570       580       590       600

              610       620       630       640       650       660
pF1KSD TQQEKKETARPSCEIVDGTREASNTERTASDGKAVGMASDIPGLHLPGGGRLPPEHGKSG
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS75 TQQEKKETARPSCEIVDGTREASNTERTASDGKAVGMASDIPGLHLPGGGRLPPEHGKSG
              610       620       630       640       650       660

              670       680       690       700       710       720
pF1KSD CSDLEEAVDSGADKKFARKPPRFSCLLPDPRELIEIKNKKKLLITGTEQFNQKPKKGIQF
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS75 CSDLEEAVDSGADKKFARKPPRFSCLLPDPRELIEIKNKKKLLITGTEQFNQKPKKGIQF
              670       680       690       700       710       720

              730       740       750       760       770       780
pF1KSD LQEKGLLTIPMDNTEVAQWLRENPRLDKKMIGEFVSDRKNIDLLESFVSTFSFQGLRLDE
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS75 LQEKGLLTIPMDNTEVAQWLRENPRLDKKMIGEFVSDRKNIDLLESFVSTFSFQGLRLDE
              730       740       750       760       770       780

              790       800       810       820       830       840
pF1KSD ALRLYLEAFRLPGEAPVIQRLLEAFTERWMNCNGSPFANSDACFSLAYAVIMLNTDQHNH
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS75 ALRLYLEAFRLPGEAPVIQRLLEAFTERWMNCNGSPFANSDACFSLAYAVIMLNTDQHNH
              790       800       810       820       830       840

              850       860       870       880       890       900
pF1KSD NVRKQNAPMTLEEFRKNLKGVNGGKDFEQDILEDMYHAIKNEEIVMPEEQTGLVRENYVW
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS75 NVRKQNAPMTLEEFRKNLKGVNGGKDFEQDILEDMYHAIKNEEIVMPEEQTGLVRENYVW
              850       860       870       880       890       900

              910       920       930       940       950       960
pF1KSD NVLLHRGATPEGIFLRVPTASYDLDLFTMTWGPTIAALSYVFDKSLEETIIQKAISGFRK
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS75 NVLLHRGATPEGIFLRVPTASYDLDLFTMTWGPTIAALSYVFDKSLEETIIQKAISGFRK
              910       920       930       940       950       960

              970       980       990      1000      1010      1020
pF1KSD CAMISAHYGLSDVFDNLIISLCKFTALSSESIENLPSVFGSNPKAHIAAKTVFHLAHRHG
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS75 CAMISAHYGLSDVFDNLIISLCKFTALSSESIENLPSVFGSNPKAHIAAKTVFHLAHRHG
              970       980       990      1000      1010      1020

             1030      1040      1050      1060      1070      1080
pF1KSD DILREGWKNIMEAMLQLFRAQLLPKAMIEVEDFVDPNGKISLQREETPSNRGESTVLSFV
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS75 DILREGWKNIMEAMLQLFRAQLLPKAMIEVEDFVDPNGKISLQREETPSNRGESTVLSFV
             1030      1040      1050      1060      1070      1080

             1090      1100      1110      1120      1130      1140
pF1KSD SWLTLSGPEQSSVRGPSTENQEAKRVALECIKQCDPEKMITESKFLQLESLQELMKALVS
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS75 SWLTLSGPEQSSVRGPSTENQEAKRVALECIKQCDPEKMITESKFLQLESLQELMKALVS
             1090      1100      1110      1120      1130      1140

             1150      1160      1170      1180      1190      1200
pF1KSD VTPDEETYDEEDAAFCLEMLLRIVLENRDRVGCVWQTVRDHLYHLCVQAQDFCFLVERAV
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS75 VTPDEETYDEEDAAFCLEMLLRIVLENRDRVGCVWQTVRDHLYHLCVQAQDFCFLVERAV
             1150      1160      1170      1180      1190      1200

             1210      1220      1230      1240      1250      1260
pF1KSD VGLLRLAIRLLRREEISAQVLLSLRILLLMKPSVLSRVSHQVAYGLHELLKTNAANIHSG
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS75 VGLLRLAIRLLRREEISAQVLLSLRILLLMKPSVLSRVSHQVAYGLHELLKTNAANIHSG
             1210      1220      1230      1240      1250      1260

             1270      1280      1290      1300      1310      1320
pF1KSD DDWATLFTLLECIGSGVKPPAALQATARADAPDAGAQSDSELPSYHQNDVSLDRGYTSDS
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS75 DDWATLFTLLECIGSGVKPPAALQATARADAPDAGAQSDSELPSYHQNDVSLDRGYTSDS
             1270      1280      1290      1300      1310      1320

             1330      1340      1350      1360      1370      1380
pF1KSD EVYTDHGRPGKIHRSATDADVVNSGWLVVGKDDVDNSKPGPSRPGPSPLINQYSLTVGLD
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS75 EVYTDHGRPGKIHRSATDADVVNSGWLVVGKDDVDNSKPGPSRPGPSPLINQYSLTVGLD
             1330      1340      1350      1360      1370      1380

             1390      1400      1410      1420      1430      1440
pF1KSD LGPHDTKSLLKCVESLSFIVRDAAHITPDNFELCVKTLRIFVEASLNGGCKSQEKRGKSH
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS75 LGPHDTKSLLKCVESLSFIVRDAAHITPDNFELCVKTLRIFVEASLNGGCKSQEKRGKSH
             1390      1400      1410      1420      1430      1440

             1450      1460      1470      1480      1490      1500
pF1KSD KYDSKGNRFKKKSKEGSMLRRPRTSSQHASRGGQSDDDEDEGVPASYHTVSLQVSQDLLD
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS75 KYDSKGNRFKKKSKEGSMLRRPRTSSQHASRGGQSDDDEDEGVPASYHTVSLQVSQDLLD
             1450      1460      1470      1480      1490      1500

             1510      1520      1530      1540      1550      1560
pF1KSD LMHTLHTRAASIYSSWAEEQRHLETGGQKIEADSRTLWAHCWCPLLQGIACLCCDARRQV
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS75 LMHTLHTRAASIYSSWAEEQRHLETGGQKIEADSRTLWAHCWCPLLQGIACLCCDARRQV
             1510      1520      1530      1540      1550      1560

             1570      1580      1590      1600      1610      1620
pF1KSD RMQALTYLQRALLVHDLQKLDALEWESCFNKVLFPLLTKLLENISPADVGGMEETRMRAS
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS75 RMQALTYLQRALLVHDLQKLDALEWESCFNKVLFPLLTKLLENISPADVGGMEETRMRAS
             1570      1580      1590      1600      1610      1620

             1630      1640      1650      1660      1670      1680
pF1KSD TLLSKVFLQHLSPLLSLSTFAALWLTILDFMDKYMHAGSSDLLSEAIPESLKNMLLVMDT
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS75 TLLSKVFLQHLSPLLSLSTFAALWLTILDFMDKYMHAGSSDLLSEAIPESLKNMLLVMDT
             1630      1640      1650      1660      1670      1680

             1690      1700      1710      1720      1730      1740
pF1KSD AEIFHSADARGGGPSALWEITWERIDCFLPHLRDELFKQTVIQDPMPMEPQGQKPLASAH
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS75 AEIFHSADARGGGPSALWEITWERIDCFLPHLRDELFKQTVIQDPMPMEPQGQKPLASAH
             1690      1700      1710      1720      1730      1740

             1750      1760      1770      1780      1790      1800
pF1KSD LTSAAGDTRTPGHPPPPEIPSELGACDFEKPESPRAASSSSPGSPVASSPSRLSPTPDGP
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS75 LTSAAGDTRTPGHPPPPEIPSELGACDFEKPESPRAASSSSPGSPVASSPSRLSPTPDGP
             1750      1760      1770      1780      1790      1800

             1810      1820      1830      1840      1850         
pF1KSD PPLAQPPLILQPLASPLQVGVPPMTLPIILNPALIEATSPVPLLATPRPTDPIPTSEVN
       :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS75 PPLAQPPLILQPLASPLQVGVPPMTLPIILNPALIEATSPVPLLATPRPTDPIPTSEVN
             1810      1820      1830      1840      1850         

>>CCDS5346.1 CYTH3 gene_id:9265|Hs108|chr7                (399 aa)
 initn: 373 init1: 344 opt: 508  Z-score: 309.7  bits: 68.4 E(32554): 6.3e-11
Smith-Waterman score: 508; 43.8% identity (71.6% similar) in 194 aa overlap (699-889:66-253)

      670       680       690       700       710       720        
pF1KSD DSGADKKFARKPPRFSCLLPDPRELIEIKNKKKLLITGTEQFNQKPKKGIQFLQEKGLL-
                                     ..: .  : ..::. :::::::: :. :: 
CCDS53 DDIERLKYEIAEVMTEIDNLTSVEESKTTQRNKQIAMGRKKFNMDPKKGIQFLIENDLLQ
          40        50        60        70        80        90     

       730       740       750         760       770       780     
pF1KSD TIPMDNTEVAQWLRENPRLDKKMIGEFVSDRK--NIDLLESFVSTFSFQGLRLDEALRLY
       . : :   :::.: ..  :.: .::.....:   :: .:..::    :  : : .::: .
CCDS53 SSPED---VAQFLYKGEGLNKTVIGDYLGERDEFNIKVLQAFVELHEFADLNLVQALRQF
         100          110       120       130       140       150  

         790       800       810       820       830       840     
pF1KSD LEAFRLPGEAPVIQRLLEAFTERWMNCNGSPFANSDACFSLAYAVIMLNTDQHNHNVRKQ
       : .:::::::  :.:..:::. :.  :: . : ..:.:. :..:.:::::. :::::: .
CCDS53 LWSFRLPGEAQKIDRMMEAFASRYCLCNPGVFQSTDTCYVLSFAIIMLNTSLHNHNVRDK
            160       170       180       190       200       210  

         850       860       870       880       890       900     
pF1KSD NAPMTLEEFRKNLKGVNGGKDFEQDILEDMYHAIKNEEIVMPEEQTGLVRENYVWNVLLH
         : : :.:    .:.: : :. ...:...:..:::: . .::.                
CCDS53 --P-TAERFIAMNRGINEGGDLPEELLRNLYESIKNEPFKIPEDDGNDLTHTFFNPDREG
               220       230       240       250       260         

         910       920       930       940       950       960     
pF1KSD RGATPEGIFLRVPTASYDLDLFTMTWGPTIAALSYVFDKSLEETIIQKAISGFRKCAMIS
                                                                   
CCDS53 WLLKLGGRVKTWKRRWFILTDNCLYYFEYTTDKEPRGIIPLENLSIREVEDPRKPNCFEL
     270       280       290       300       310       320         




1859 residues in 1 query   sequences
18511270 residues in 32554 library sequences
 Tcomplib [36.3.4 Apr, 2011] (8 proc)
 start: Thu Nov  3 00:54:18 2016 done: Thu Nov  3 00:54:19 2016
 Total Scan time:  7.010 Total Display time:  0.160

Function used was FASTA [36.3.4 Apr, 2011]
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