Result of GENSCAN for pF1KSDA0238
GENSCAN 1.0	Date run:  3-Nov-116	Time: 00:52:41

Sequence gi568815578r:4756975_5032562 : 275588 bp : 45.73% C+G : Isochore 2 (43 - 51 C+G%)

Parameter matrix: HumanIso.smat

Predicted genes/exons:

Gn.Ex Type S .Begin ...End .Len Fr Ph I/Ac Do/T CodRg P.... Tscr..
----- ---- - ------ ------ ---- -- -- ---- ---- ----- ----- ------

 1.01 Intr +   2337   2394   58  0  1   51   92    58 0.329   1.39
 1.02 Intr +   4348   4450  103  0  1   67   63    60 0.569   1.15
 1.03 Term +   6839   6921   83  0  2  100   49    70 0.752   2.16
 1.04 PlyA +   7687   7692    6                               1.05

 2.16 PlyA -  11254  11249    6                               1.05
 2.15 Term -  15396  15288  109  2  1   73   38    66 0.102  -1.92
 2.14 Intr -  19908  19778  131  0  2   53   63    87 0.170   2.19
 2.13 Intr -  25556  25484   73  1  1   77   78    65 0.295   3.81
 2.12 Intr -  29354  29257   98  2  2  126  108    86 0.992  13.21
 2.11 Intr -  30780  30659  122  1  2   77   86   216 0.938  20.51
 2.10 Intr -  31294  31243   52  1  1   59  103    83 0.795   5.38
 2.09 Intr -  32723  32652   72  2  0   77   34   140 0.784   7.10
 2.08 Intr -  33637  33477  161  2  2   80  116   215 0.999  23.21
 2.07 Intr -  35653  35565   89  0  2   98   88    92 0.619   9.81
 2.06 Intr -  38992  38841  152  1  2   82   84   200 0.999  17.96
 2.05 Intr -  41111  41036   76  1  1   93   94    90 0.934   9.62
 2.04 Intr -  44402  44230  173  2  2   67   52     2 0.190  -6.76
 2.03 Intr -  45373  45252  122  2  2   43   40   109 0.304   1.81
 2.02 Intr -  49005  48813  193  0  1   50   49   176 0.526   8.97
 2.01 Init -  49773  49723   51  0  0   71   78    44 0.403   0.86
 2.00 Prom -  50001  49962   40                              -5.96

 3.00 Prom +  52439  52478   40                              -1.26
 3.01 Init +  56558  56764  207  1  0   76   33   108 0.053   2.96
 3.02 Intr +  64073  64195  123  1  0   32   94   105 0.087   6.28
 3.03 Intr +  68990  69041   52  1  1   79   99    46 0.034   3.28
 3.04 Intr +  78379  78502  124  2  1   11   78    83 0.049  -0.76
 3.05 Intr +  82646  82769  124  2  1   74   93    29 0.461   2.59
 3.06 Term +  83857  83877   21  0  0   94   55    32 0.423  -1.19
 3.07 PlyA +  86261  86266    6                               1.05

 4.13 PlyA -  86619  86614    6                               1.05
 4.12 Term - 100230  99998  233  1  2   19   38   213 0.884   6.04
 4.11 Intr - 102410 102315   96  0  0  118   98    85 0.995  12.48
 4.10 Intr - 105111 104974  138  1  0   86   94    69 0.937   7.74
 4.09 Intr - 105933 105804  130  0  1  111   91   139 0.996  16.77
 4.08 Intr - 110901 110796  106  2  1   80   81    53 0.978   4.02
 4.07 Intr - 113079 112932  148  1  1   88   98   256 0.997  25.89
 4.06 Intr - 117118 116962  157  1  1   66  103   142 0.998  13.08
 4.05 Intr - 117722 117602  121  1  1  138   76    -5 0.988   3.80
 4.04 Intr - 126849 126668  182  0  2  118   87   138 0.717  15.37
 4.03 Intr - 127849 127779   71  2  2   49   83    82 0.897   2.70
 4.02 Intr - 128935 128847   89  0  2   92   91    51 0.939   5.41
 4.01 Init - 129211 129150   62  1  2   70   35    82 0.611   0.14
 4.00 Prom - 132858 132819   40                              -2.66

 5.06 PlyA - 133347 133342    6                               1.05
 5.05 Term - 140152 139973  180  1  0   67   55   178 0.972  10.01
 5.04 Intr - 142222 142153   70  0  1  101   84     1 0.923   0.18
 5.03 Intr - 142738 142581  158  1  2  114   94   140 0.998  16.01
 5.02 Intr - 145584 145468  117  0  0   93  110    54 0.994   8.76
 5.01 Init - 156049 155906  144  1  0   53   75   196 0.585  14.92
 5.00 Prom - 157071 157032   40                              -5.96

 6.00 Prom + 157198 157237   40                              -3.46
 6.01 Init + 172339 172417   79  0  1   68   81   124 0.952   8.92
 6.02 Term + 176857 176975  119  2  2   73   41    85 0.808   1.00
 6.03 PlyA + 177015 177020    6                               1.05

 7.00 Prom + 180201 180240   40                              -2.46
 7.01 Init + 181641 181690   50  2  2  118  115    -4 0.904   5.72
 7.02 Term + 192589 192982  394  1  1   55   53   134 0.458   1.11
 7.03 PlyA + 194214 194219    6                               1.05

 8.06 PlyA - 197265 197260    6                               1.05
 8.05 Term - 212826 212726  101  1  2   37   47    86 0.026  -2.31
 8.04 Intr - 213945 213819  127  0  1   90   82    47 0.031   4.55
 8.03 Intr - 244524 244367  158  1  2   82   32    90 0.037   2.53
 8.02 Intr - 256763 256593  171  0  0   30   48   117 0.009   1.81
 8.01 Init - 272820 272763   58  0  1   86   58    98 0.911   6.07

Suboptimal exons with probability > 0.800

Exnum Type S .Begin ...End .Len Fr Ph B/Ac Do/T CodRg P.... Tscr..
----- ---- - ------ ------ ---- -- -- ---- ---- ----- ----- ------

S.001 Term -  96026  95956   71  0  2   83   48    99 0.840   3.50
S.002 Init + 216727 216789   63  0  0   82   71    74 0.840   6.27
S.003 Term - 271284 271190   95  1  2   85   49    62 0.879  -0.01


Predicted peptide sequence(s):

Predicted coding sequence(s):


>gi568815578r:4756975_5032562|GENSCAN_predicted_peptide_1|81_aa
XRWRFPESISCSSVERYRCWERAMPEPTEVGSGAALEVRACNAHVNAKDGSFSASTLELT
AMCSEENEANQPKANPKHPMA

>gi568815578r:4756975_5032562|GENSCAN_predicted_CDS_1|246_bp
nngaggtggcgctttccagaaagcatcagctgtagtagcgtggagaggtaccggtgttgg
gagagggcaatgcctgagcccacggaagttgggtcaggggcagcattggaagtcagagcc
tgcaatgctcacgtaaatgcaaaagatggttccttcagtgccagtaccttggagttgaca
gccatgtgctcagaggagaatgaagcaaaccaaccaaaagccaaccccaaacacccaatg
gcctga

>gi568815578r:4756975_5032562|GENSCAN_predicted_peptide_2|557_aa
MDRLQWLTVIPALWEAEACCTSGYLHWKFPWVCLKLSPGPHFSNCEGGTSAYVAVLASSL
CVTRTLPVTPRFIRQHTLSPKVLVIITGVVLLASSEQNPEMLLNTCNAQDSPTTKNSPRP
GARGGLISHPWNQCGCQCALWLGHLCLDCPRVVVFPLDVCSQRLWQAEAAASSVAPHSLG
NELLLHLKTYNLYYEGQNLQLRHREEEDEFIVEGLLNISWGLRRPIRLQMQDDNERIRPP
PSSSSWHSGCNLGAQGTTLKPLTVPKVQISEVDAPPEGDQMPSSTDSRGLKPLQEDTPQL
MRTRSDVGVRRRGNVRTPSDQRRIRRHRFSINGHFYNHKTSVFTPAYGSVTNVRINSTMT
TPQIENSAEEFALYVVHTSGEKQKLKATDYPLIARILQGPCEQISKVFLMEKDQVEEVTY
DVAQYIKFEMPVLKSFIQKLQEEEDREVKKLMRKDSSTSPVGHGVEAQKGFCKLHRTGSL
SPSKLPLMPPTLTCRAIYGVNSTESGVSYNILPWDNPGVLRRKPITETMSLAKEEGFHQV
LQLRRRKISLKSISLSN

>gi568815578r:4756975_5032562|GENSCAN_predicted_CDS_2|1674_bp
atggaccggctgcagtggctcactgtaatcccagcactttgggaggctgaggcctgctgt
acttctggttatctgcactggaagtttccatgggtctgcctgaaactcagtcctggtcct
cacttcagcaactgtgaaggtggcacctctgcctacgttgcggtcctcgccagcagcctg
tgcgtcaccaggactctgcctgtcaccccacgtttcatccggcagcacaccctttcccca
aaggttttggtcatcatcactggggtagtgctgctggcatctagtgagcagaatccagag
atgctgctaaacacctgcaatgcacaagacagtcccacgacaaagaacagtccaaggcca
ggggcgagaggaggactcatcagtcatccttggaaccaatgtggctgtcagtgtgctctg
tggctggggcatttgtgcttggattgtccaagggttgtcgtctttcctttggatgtttgt
tctcagaggctgtggcaagccgaggcagcagccagcagtgttgcccctcacagccttgga
aatgaacttctcttgcatctgaagacctacaacttgtactatgaaggccagaatttacag
ctccggcaccgggaggaagaagacgagttcattgtggaggggctcctgaacatctcctgg
ggcctgcgccggcccattcgcctgcagatgcaggatgacaacgaacgcattcgaccccct
ccatcctcctcctcctggcactctggctgtaacctgggggctcagggaaccactctgaag
cccctgactgtgcccaaagttcagatctcagaggtggatgccccgccggagggtgaccag
atgccaagctccacagactccaggggcctgaagcccctgcaggaggacaccccacagctg
atgcgcacacgcagtgatgttggggtgcgtcgccgtggcaatgtgaggacgcctagtgac
cagcggcgaatcagacgccaccgcttctccatcaacggccatttctacaaccataagaca
tccgtgttcacaccagcctatggctctgtcaccaacgtccgcatcaacagcaccatgacc
accccacagattgagaattcagcagaggagtttgccttgtacgtggtccatacgagtggt
gagaaacagaagctgaaggccaccgattacccgctgattgcccgaatcctccagggccca
tgtgagcagatctccaaagtgttcctaatggagaaggaccaggtggaggaagtcacctac
gacgtggcccagtatataaagttcgagatgccggtacttaaaagcttcattcagaagctc
caggaggaagaagatcgggaagtaaagaagctgatgcgcaaggacagcagcaccagccct
gtggggcatggagtggaagcccagaagggcttctgcaagctgcacagaactgggtcacta
agcccctctaagctgcccttgatgccacctaccctcacctgcagagccatctatggggtc
aacagcaccgagagtggggtatcttacaacatccttccctgggacaacccaggggttctg
agaagaaaaccaatcactgagacaatgagccttgccaaggaagaaggctttcatcaggtg
ctgcagctaagaagacggaagatcagtctcaaatccatctccctgagcaactaa

>gi568815578r:4756975_5032562|GENSCAN_predicted_peptide_3|216_aa
MASQTGGAATCLQGSPTGIHKCLTFRMDVAEGNSERLATNQRGRALERDEKGSIKEAQTP
EKSSCVCVGLTRSAIPKQLTYGTQTRSLAPGHQEIDQEVKAKPIATGMSQASTTRGQTKR
LMAQEATGLKGEMGKDILGRGSSKFKAMRSLARPENSVWSSVGGTEGGSCRGMQVGQGDR
EQESECTVRQGRGTPPTPRHHTVAPCSMGLDIPAVS

>gi568815578r:4756975_5032562|GENSCAN_predicted_CDS_3|651_bp
atggcctcgcagaccggaggagcagccacatgtttacagggaagccccactggcatccac
aagtgcctgacctttaggatggatgttgcagaaggaaattcagagcgcttagccactaat
cagagaggcagggcgctggagcgggacgaaaaaggaagcataaaggaagcacagactcca
gaaaaaagcagctgtgtgtgcgtgggtctgactcgctcagccattcctaagcagctcacg
tatggaacgcagacacgaagcctggctccggggcaccaggaaatagaccaagaagtcaaa
gcaaaaccaatagcaactgggatgtctcaggcttctaccaccagaggccagaccaagagg
ctcatggcccaggaagcaacaggtcttaagggtgagatggggaaggacattctaggcaga
ggcagcagcaagttcaaagccatgaggagcctggctcgaccagagaacagcgtgtggtcc
agcgtgggtggaacagaaggtgggagctgcaggggaatgcaagtgggccagggggataga
gaacaggaatctgaatgcacagtcagacagggccgtggaacacccccaacccctaggcac
catactgtggccccatgctctatggggctggatatacctgctgtcagctga

>gi568815578r:4756975_5032562|GENSCAN_predicted_peptide_4|510_aa
MAGAGVGVLALTTGPTLELPGLPLFQASAFAFLAPARAILSLDKWKCNTTDVSVANGTAE
LLHTEHIWYPRIREIQGAIIMSSLIEVVIGLLGLPGALLKYIGPLTITPTVALIGLSGFQ
AAGERAGKHWGIAMLTIFLVLLFSQYARNVKFPLPIYKSKKGWTAYKLQLFKMFPIILAI
LVSWLLCFIFTVTDVFPPDSTKYGFYARTDARQGVLLVAPWFKVPYPFQWGLPTVSAAGV
IGMLSAVVASIIESIGDYYACARLSCAPPPPIHAINRGIFVEGLSCVLDGIFGTGNGSTS
SSPNIGVLGITKVGSRRVIQCGAALMLALGMIGKFSALFASLPDPVLGALFCTLFGMITA
VGLSNLQFIDLNSSRNLFVLGFSIFFGLVLPSYLRQNPLVTGITGIDQVLNVLLTTAMFV
GGCVAFILDNTIPGTPEERGIRKWKKGVGKGNKSLDGMESYNLPFGMNIIKKYRCFSYLP
ISPTFVGYTWKGLRKSDNSRSSDEDSQATG

>gi568815578r:4756975_5032562|GENSCAN_predicted_CDS_4|1533_bp
atggcaggggccggtgttggggtgttggcactgaccacggggcccaccctggagctgcct
gggttacccctgtttcaggccagtgcttttgcatttttggcccctgctcgagccatcctg
tctttagataaatggaaatgtaacaccacagatgtttcagttgccaatggaacagcagag
ctgttgcacacagaacacatctggtatccccggatccgagagatccagggggccatcatc
atgtcctcactgatagaagtagtcatcggcctcctcggcctgcctggggctctactgaag
tacatcggtcccttgaccattacacccacggtggccctaattggcctctctggtttccag
gcagcgggggagagagccgggaagcactggggcattgccatgctgacaatattcctagta
ttactgttttctcaatacgccagaaatgttaaatttcctctcccgatttataaatccaag
aaaggatggactgcgtacaagttacagctgttcaaaatgttccctatcatcctggccatc
ctggtatcctggctgctctgcttcatcttcacggtgacagatgtcttccctcccgacagc
acaaagtatggcttctatgctcgcacagatgccaggcaaggcgtgcttctggtagccccg
tggtttaaggttccatacccatttcagtggggactgcccaccgtgtctgcggccggtgtc
atcggcatgctcagtgccgtggtcgccagcatcatcgagtctattggtgactactacgcc
tgtgcacggctgtcctgtgccccacccccccccatccacgcaataaacaggggaattttc
gtggaaggcctctcctgtgttcttgatggcatatttggtactgggaatggctctacttca
tccagtcccaacattggagttttgggaattacaaaggtcggcagccgccgcgtgatacag
tgcggagcagccctcatgctcgctctgggcatgatcgggaagttcagcgccctctttgcg
tcccttccggatcctgtgctgggagccctgttctgcacgctctttggaatgatcacagct
gttggcctctctaacctgcagttcattgatttaaattcttcccggaacctctttgtgctt
ggattttcgatcttctttgggctcgtccttccaagttacctcagacagaaccctctggtc
acagggataacaggaatcgatcaagtgttgaacgtccttctcacaactgctatgtttgta
gggggctgtgtggcttttatcctggataacaccatcccaggcactccagaggaaagagga
atccggaaatggaagaagggtgtgggcaaagggaacaaatcactcgacggcatggagtcg
tacaatttgccatttggcatgaacattataaaaaaatacagatgcttcagctacttaccc
atcagcccaacctttgtgggctacacatggaaaggcctcaggaagagcgacaacagccgg
agttcagatgaagactcccaggccacgggatag

>gi568815578r:4756975_5032562|GENSCAN_predicted_peptide_5|222_aa
MWFTLKQPLSGLSLQVVINGGATSSGEQDNEDTELMAIYTTENGIAEKSSLAETLDSTGS
LDPQRSDMIYTIEDVPPWYLCIFLGLQHYLTCFSGTIAVPFLLADAMCVGYDQWATSQLI
GTIFFCVGITTLLQTTFGCRALLLDSLCAPHPVPSFYFHTLLRVRGLAIVGRNGDIEAHG
LQHEGQRHQGDTVHPPGDLVGALEEVVFETGPAGSKGSAQEG

>gi568815578r:4756975_5032562|GENSCAN_predicted_CDS_5|669_bp
atgtggttcacgctgaaacagcctctaagtggattgtctctgcaggtggtgataaatgga
ggcgccacctccagcggtgagcaggacaatgaggacactgagctcatggcgatctacact
acggaaaacggcattgcagaaaagagctctctcgctgagaccctggatagcactggcagt
ctggacccccagcgatcagacatgatttataccatagaagatgttcctccctggtacctg
tgtatatttctggggctacagcactacctgacatgcttcagcggcacgatcgcagtgccc
ttcctgttggccgatgccatgtgtgtggggtacgaccagtgggccaccagccagctcatt
gggaccattttcttctgtgtgggaatcactactttgctacagacaacgtttggatgcagg
gcactgctcttggactcactttgtgccccacacccagtgccatctttctacttccacacc
ctcctcagggtgcggggcctggccattgtggggcgcaatggtgacatcgaagcacatggc
ttgcagcacgaagggcagcgccatcagggagacacagtgcatcctccaggggacttggtg
ggagccctggaggaggtggtgtttgagacaggccctgcaggctccaagggctctgcccag
gagggctga

>gi568815578r:4756975_5032562|GENSCAN_predicted_peptide_6|65_aa
MGLTLGPAGLSLEALSQAASAPAGEQGIKNPTKLPCKCEDRTAISLEIQVQNLLFEELFM
GHFIQ

>gi568815578r:4756975_5032562|GENSCAN_predicted_CDS_6|198_bp
atggggctgacactgggacctgctgggctgagcctggaagccctaagccaggcagcctcg
gctccagcaggggaacaaggaataaagaatccaaccaagctgccctgcaaatgtgaggac
aggactgcaataagtttggaaatacaagtacagaacttgctgtttgaggaactcttcatg
ggacacttcattcaataa

>gi568815578r:4756975_5032562|GENSCAN_predicted_peptide_7|147_aa
MPGPSFHLDGSKHLSKCTKKPFGDFLVMQLCKTENFSPTYTGTVTHTQARTHTETDIYVE
NQKHHQRYKHSDTHMETDTRRPKCTQTQTDSNQSVYPHNSFPKAEPPNGLTFKVKLHPST
EMSSNQCVTHHFCAGVCATLRLSWYSA

>gi568815578r:4756975_5032562|GENSCAN_predicted_CDS_7|444_bp
atgccgggcccctcattccatcttgatggctctaaacacttgtccaaatgcactaagaaa
ccctttggagattttctagtaatgcagctgtgcaaaactgagaacttctcacccacctac
acaggcacagtcacacacacacaggcgcgcacacacacagaaacagacatatatgtagaa
aatcagaaacatcaccagagatacaaacactcagatactcacatggaaacagatacacgc
agacccaaatgcacacagacacaaacagatagtaatcaatctgtatatcctcacaactca
ttccccaaagcagaaccgccaaatggccttaccttcaaagtgaaactccacccttccaca
gaaatgtcctctaatcagtgcgtcacccaccacttctgtgccggtgtctgtgcaaccctg
cgattgtcctggtactcagcatga

>gi568815578r:4756975_5032562|GENSCAN_predicted_peptide_8|204_aa
MGFLHAGLAGLAGLELLTSGVASTCRIMLVSLWTYMKCSTSNCIISIKDYTSIRINVAEV
DKVTSRFNGQFKTYAFGGCRGDRRRRLQRALRRRGAAAGREPRELQPGESPAAAPPARPA
GRTCRRGRELGLDSTNGDFSYGFELGPWCISKCNSANCNGKHMDRSTPHHLEKPQVFHIC
RYILSDTLLLDVVVHAYSPSYSGD

>gi568815578r:4756975_5032562|GENSCAN_predicted_CDS_8|615_bp
atggggtttctccatgctggtctggctggtctggctggtctcgaactcctgacctcaggt
gtggcctcaacatgcagaataatgctagtgagtttgtggacgtatatgaaatgctccacc
agcaactgcatcatcagcatcaaagactacacctccatccggataaatgtggctgaggtt
gataaagtcacgagcaggtttaatggccagtttaaaacctatgctttcggcggctgtcgc
ggggaccggaggcggaggctgcagcgggcactgcggcgccgaggcgcggcggcaggacgg
gaaccacgcgagctgcagccaggtgagagcccggccgccgcgccccctgcccggcctgcg
ggccgcacctgccggcggggccgcgagctaggtcttgactccactaacggggacttctca
tacggctttgaacttggaccttggtgcataagcaaatgtaactcagcgaattgtaatgga
aagcatatggacaggtctacgccacatcacttagaaaagccgcaagtgtttcacatctgc
cgatacattctctcagatactctgcttctggatgtggtggtgcacgcctatagtcccagc
tactctggagactga
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