Result of FASTA (ccds) for pF1KSDA0222
FASTA searches a protein or DNA sequence data bank 36.3.4 Apr, 2011
Please cite:
W.R. Pearson & D.J. Lipman PNAS (1988) 85:2444-2448

Query: pF1KSDA0222, 1163 aa
  1>>>pF1KSDA0222 1163 - 1163 aa - 1163 aa
Library: human.CCDS.faa
  18511270 residues in 32554 sequences

Statistics:  Expectation_n fit: rho(ln(x))= 14.0103+/-0.00125; mu= -16.4620+/- 0.073
 mean_var=666.3229+/-162.301, 0's: 0 Z-trim(114.8): 191  B-trim: 833 in 1/52
 Lambda= 0.049686
 statistics sampled from 15168 (15358) to 15168 sequences
Algorithm: FASTA (3.7 Nov 2010) [optimized]
Parameters: BL50 matrix (15:-5), open/ext: -10/-2
 ktup: 2, E-join: 1 (0.76), E-opt: 0.2 (0.472), width:  16
 Scan time:  5.150

The best scores are:                                      opt bits E(32554)
CCDS74234.1 ZNF516 gene_id:9658|Hs108|chr18        (1163) 8082 595.7 2.1e-169
CCDS32984.1 ZNF536 gene_id:9745|Hs108|chr19        (1300) 1000 88.1 1.5e-16


>>CCDS74234.1 ZNF516 gene_id:9658|Hs108|chr18             (1163 aa)
 initn: 8082 init1: 8082 opt: 8082  Z-score: 3154.9  bits: 595.7 E(32554): 2.1e-169
Smith-Waterman score: 8082; 100.0% identity (100.0% similar) in 1163 aa overlap (1-1163:1-1163)

               10        20        30        40        50        60
pF1KSD MDRNREAEMELRRGPSPTRAGRGHEVDGDKATCHTCCICGKSFPFQSSLSQHMRKHTGEK
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS74 MDRNREAEMELRRGPSPTRAGRGHEVDGDKATCHTCCICGKSFPFQSSLSQHMRKHTGEK
               10        20        30        40        50        60

               70        80        90       100       110       120
pF1KSD PYKCPYCDHRASQKGNLKIHIRSHRTGTLIQGHEPEAGEAPLGEMRASEGLDACASPTKS
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS74 PYKCPYCDHRASQKGNLKIHIRSHRTGTLIQGHEPEAGEAPLGEMRASEGLDACASPTKS
               70        80        90       100       110       120

              130       140       150       160       170       180
pF1KSD ASACNRLLNGASQADGARVLNGASQADSGRVLLRSSKKGAEGSACAPGEAKAAVQCSFCK
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS74 ASACNRLLNGASQADGARVLNGASQADSGRVLLRSSKKGAEGSACAPGEAKAAVQCSFCK
              130       140       150       160       170       180

              190       200       210       220       230       240
pF1KSD SQFERKKDLELHVHQAHKPFKCRLCSYATLREESLLSHIERDHITAQGPGSGEACVENGK
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS74 SQFERKKDLELHVHQAHKPFKCRLCSYATLREESLLSHIERDHITAQGPGSGEACVENGK
              190       200       210       220       230       240

              250       260       270       280       290       300
pF1KSD PELSPGEFPCEVCGQAFSQTWFLKAHMKKHRGSFDHGCHICGRRFKEPWFLKNHMKAHGP
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS74 PELSPGEFPCEVCGQAFSQTWFLKAHMKKHRGSFDHGCHICGRRFKEPWFLKNHMKAHGP
              250       260       270       280       290       300

              310       320       330       340       350       360
pF1KSD KTGSKNRPKSELDPIATINNVVQEEVIVAGLSLYEVCAKCGNLFTNLDSLNAHNAIHRRV
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS74 KTGSKNRPKSELDPIATINNVVQEEVIVAGLSLYEVCAKCGNLFTNLDSLNAHNAIHRRV
              310       320       330       340       350       360

              370       380       390       400       410       420
pF1KSD EASRTRAPAEEGAEGPSDTKQFFLQCLNLRPSAAGDSCPGTQAGRRVAELDPVNSYQAWQ
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS74 EASRTRAPAEEGAEGPSDTKQFFLQCLNLRPSAAGDSCPGTQAGRRVAELDPVNSYQAWQ
              370       380       390       400       410       420

              430       440       450       460       470       480
pF1KSD LATRGKVAEPAEYLKYGAWDEALAGDVAFDKDRREYVLVSQEKRKREQDAPAAQGPPRKR
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS74 LATRGKVAEPAEYLKYGAWDEALAGDVAFDKDRREYVLVSQEKRKREQDAPAAQGPPRKR
              430       440       450       460       470       480

              490       500       510       520       530       540
pF1KSD ASGPGDPAPAGHLDPRSAARPNRRAAATTGQGKSSECFECGKIFRTYHQMVLHSRVHRRA
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS74 ASGPGDPAPAGHLDPRSAARPNRRAAATTGQGKSSECFECGKIFRTYHQMVLHSRVHRRA
              490       500       510       520       530       540

              550       560       570       580       590       600
pF1KSD RRERDSDGDRAARARCGSLSEGDSASQPSSPGSACAAADSPGSGLADEAAEDSGEEGAPE
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS74 RRERDSDGDRAARARCGSLSEGDSASQPSSPGSACAAADSPGSGLADEAAEDSGEEGAPE
              550       560       570       580       590       600

              610       620       630       640       650       660
pF1KSD PAPGGQPRRCCFSEEVTSTELSSGDQSHKMGDNASERDTGESKAGIAASVSILENSSRET
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS74 PAPGGQPRRCCFSEEVTSTELSSGDQSHKMGDNASERDTGESKAGIAASVSILENSSRET
              610       620       630       640       650       660

              670       680       690       700       710       720
pF1KSD SRRQEQHRFSMDLKMPAFHPKQEVPVPGDGVEFPSSTGAEGQTGHPAEKLSDLHNKEHSG
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS74 SRRQEQHRFSMDLKMPAFHPKQEVPVPGDGVEFPSSTGAEGQTGHPAEKLSDLHNKEHSG
              670       680       690       700       710       720

              730       740       750       760       770       780
pF1KSD GGKRALAPDLMPLDLSARSTRDDPSNKETASSLQAALVVHPCPYCSHKTYYPEVLWMHKR
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS74 GGKRALAPDLMPLDLSARSTRDDPSNKETASSLQAALVVHPCPYCSHKTYYPEVLWMHKR
              730       740       750       760       770       780

              790       800       810       820       830       840
pF1KSD IWHRVSCNSVAPPWIQPNGYKSIRSNLVFLSRSGRTGPPPALGGKECQPLLLARFTRTQV
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS74 IWHRVSCNSVAPPWIQPNGYKSIRSNLVFLSRSGRTGPPPALGGKECQPLLLARFTRTQV
              790       800       810       820       830       840

              850       860       870       880       890       900
pF1KSD PGGMPGSKSGSSPLGVVTKAASMPKNKESHSGGPCALWAPGPDGYRQTKPCHGQEPHGAA
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS74 PGGMPGSKSGSSPLGVVTKAASMPKNKESHSGGPCALWAPGPDGYRQTKPCHGQEPHGAA
              850       860       870       880       890       900

              910       920       930       940       950       960
pF1KSD TQGPLAKPRQEASSKPVPAPGGGGFSRSATPTPTVIARAGAQPSANSKPVEKFGVPPAGA
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS74 TQGPLAKPRQEASSKPVPAPGGGGFSRSATPTPTVIARAGAQPSANSKPVEKFGVPPAGA
              910       920       930       940       950       960

              970       980       990      1000      1010      1020
pF1KSD GFAPTNKHSAPDSLKAKFSAQPQGPPPAKGEGGAPPLPPREPPSKAAQELRTLATCAAGS
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS74 GFAPTNKHSAPDSLKAKFSAQPQGPPPAKGEGGAPPLPPREPPSKAAQELRTLATCAAGS
              970       980       990      1000      1010      1020

             1030      1040      1050      1060      1070      1080
pF1KSD RGDAALQAQPGVAGAPPVLHSIKQEPVAEGHEKRLDILNIFKTYIPKDFATLYQGWGVSG
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS74 RGDAALQAQPGVAGAPPVLHSIKQEPVAEGHEKRLDILNIFKTYIPKDFATLYQGWGVSG
             1030      1040      1050      1060      1070      1080

             1090      1100      1110      1120      1130      1140
pF1KSD PGLEHRGTLRTQARPGEFVCIECGKSFHQPGHLRAHMRAHSVVFESDGPRGSEVHTTSAD
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS74 PGLEHRGTLRTQARPGEFVCIECGKSFHQPGHLRAHMRAHSVVFESDGPRGSEVHTTSAD
             1090      1100      1110      1120      1130      1140

             1150      1160   
pF1KSD APKQGRDHSNTGTVQTVPLRKGT
       :::::::::::::::::::::::
CCDS74 APKQGRDHSNTGTVQTVPLRKGT
             1150      1160   

>>CCDS32984.1 ZNF536 gene_id:9745|Hs108|chr19             (1300 aa)
 initn: 1224 init1: 377 opt: 1000  Z-score: 410.7  bits: 88.1 E(32554): 1.5e-16
Smith-Waterman score: 1254; 38.3% identity (62.1% similar) in 622 aa overlap (25-606:121-727)

                     10        20        30        40        50    
pF1KSD       MDRNREAEMELRRGPSPTRAGRGHEVDGDKATCHTCCICGKSFPFQSSLSQHMR
                                     : :. :   . : .::: : :.: :: :::
CCDS32 EVDTSLNGRVDLQQFLNGQNLGIMSQMSDIEDDARKNRKYPCPLCGKRFRFNSILSLHMR
              100       110       120       130       140       150

           60        70        80        90           100          
pF1KSD KHTGEKPYKCPYCDHRASQKGNLKIHIRSHRTGTLIQGH----EPEAGEAPLGE---MRA
        ::::::.:::::::::.::::::::.:.:. :.: .:.    : .     : :   .: 
CCDS32 THTGEKPFKCPYCDHRAAQKGNLKIHLRTHKLGNLGKGRGRVREENRLLHELEERAILRD
              160       170       180       190       200       210

       110       120       130       140       150       160       
pF1KSD SEGLDACASPTKSASACNRLLNGASQADGARVLNGASQADSGRVLLRSSKKGAEGSACAP
       ..   .  .:  . .   .  ..   :    .  . :  : .. .   .  ... .: ::
CCDS32 KQLKGSLLQPRPDLKPPPHAQQAPLAACTLALQANHSVPDVAHPVPSPKPASVQEDAVAP
              220       230       240       250       260       270

       170       180       190       200       210       220       
pF1KSD GEAKAAVQCSFCKSQFERKKDLELHVHQAHKPFKCRLCSYATLREESLLSHIERDHITAQ
       .   :. .:.:::..:.....:. :..  :::.:: ::..:. .:: :.::.:. ::::.
CCDS32 A---AGFRCTFCKGKFKKREELDRHIRILHKPYKCTLCDFAASQEEELISHVEKAHITAE
                 280       290       300       310       320       

        230       240       250       260       270       280      
pF1KSD GP-GSGEACVENGKPELSPGEFPCEVCGQAFSQTWFLKAHMKKHRGSFDHGCHICGRRFK
       .  :.:     ::  : : .:: ::::::.:::.::::.::.::. ::.: :.:::::::
CCDS32 SAQGQGP----NGGGEQSANEFRCEVCGQVFSQAWFLKGHMRKHKDSFEHCCQICGRRFK
       330           340       350       360       370       380   

        290       300       310        320       330       340     
pF1KSD EPWFLKNHMKAHGPKTGSKNRPKSELDP-IATINNVVQEEVIVAGLSLYEVCAKCGNLFT
       ::::::::::.:  : . ::  ::  :: . .  . ...:. .   : :  : . : .  
CCDS32 EPWFLKNHMKVHLNKLSVKN--KSPSDPEVPVPMGGMSQEAHANLYSRYLSCLQSGFMTP
           390       400         410       420       430       440 

         350              360        370        380       390      
pF1KSD NLDSLNAHNAIH-------RRVEA-SRTRAPAEEGAEG-PSDTKQFFLQCLNLRPSAAGD
       .  .:.  . ..       .. :: ..  .:    :.: :   :. .: :::: :   ..
CCDS32 DKAGLSEPSQLYGKGELPMKEKEALGKLLSPISSMAHGVPEGDKHSLLGCLNLVPPLKSS
             450       460       470       480       490       500 

        400       410       420       430            440       450 
pF1KSD SCPGTQAGRRVAELDPVNSYQAWQLATRGKVAEPA----EY-LKYGAWDEALAGDVAFDK
            ::. ..::.::::::::::: .:: . : .    :. :. .  :    . : :::
CCDS32 CIERLQAAAKAAEMDPVNSYQAWQLMARGMAMEHGFLSKEHPLQRNHEDTLANAGVLFDK
             510       520       530       540       550       560 

             460       470       480       490       500           
pF1KSD DRREYVLVSQEKRKREQDAPAAQGPPRKRASGPGDPAPAGHLDPRSAARP------NRRA
       ..::::::. .  :  :  ::      : .:    :.   .:::  ..:       :.  
CCDS32 EKREYVLVGADGSK--QKMPADLVHSTKVGSQRDLPS---KLDPLESSRDFLSHGLNQTL
             570         580       590          600       610      

          510           520       530       540       550          
pF1KSD AATT-GQG----KSSECFECGKIFRTYHQMVLHSRVHRRARRERDSDGDRAA---RARCG
         .  : :    : .:: .::..::::::.:.:::::.: :. .. :: ...   :   :
CCDS32 EYNLQGPGNMKEKPTECPDCGRVFRTYHQVVVHSRVHKRDRKGEE-DGLHVGLDERRGSG
        620       630       640       650       660        670     

       560       570       580          590       600       610    
pF1KSD SLSEGDSASQPSSPGSACAAADSP-GSGLADE--AAEDSGEEGAPEPAPGGQPRRCCFSE
       : .:..:.:. ..:::. .. .:  :.::..   : ::: . ..:  .  :.        
CCDS32 SDQESQSVSRSTTPGSSNVTEESGVGGGLSQTGSAQEDSPHPSSPSSSDIGEEAGRSAGV
         680       690       700       710       720       730     

          620       630       640       650       660       670    
pF1KSD EVTSTELSSGDQSHKMGDNASERDTGESKAGIAASVSILENSSRETSRRQEQHRFSMDLK
                                                                   
CCDS32 QQPALLRDRSLGSAMKDCPYCGKTFRTSHHLKVHLRIHTGEKPYKCPHCDYAGTQSASLK
         740       750       760       770       780       790     




1163 residues in 1 query   sequences
18511270 residues in 32554 library sequences
 Tcomplib [36.3.4 Apr, 2011] (8 proc)
 start: Thu Nov  3 00:46:29 2016 done: Thu Nov  3 00:46:30 2016
 Total Scan time:  5.150 Total Display time:  0.100

Function used was FASTA [36.3.4 Apr, 2011]
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