Result of FASTA (omim) for pF1KSDA0174
FASTA searches a protein or DNA sequence data bank 36.3.4 Apr, 2011
Please cite:
W.R. Pearson & D.J. Lipman PNAS (1988) 85:2444-2448

Query: pF1KSDA0174, 364 aa
  1>>>pF1KSDA0174 364 - 364 aa - 364 aa
Library: /omim/omim.rfq.tfa
  60827320 residues in 85289 sequences

Statistics:  Expectation_n fit: rho(ln(x))= 9.3043+/-0.000393; mu= -0.1487+/- 0.025
 mean_var=285.7682+/-58.043, 0's: 0 Z-trim(121.1): 9  B-trim: 0 in 0/57
 Lambda= 0.075870
 statistics sampled from 37302 (37311) to 37302 sequences
Algorithm: FASTA (3.7 Nov 2010) [optimized]
Parameters: BL50 matrix (15:-5), open/ext: -10/-2
 ktup: 2, E-join: 1 (0.761), E-opt: 0.2 (0.437), width:  16
 Scan time:  8.240

The best scores are:                                      opt bits E(85289)
NP_001257904 (OMIM: 616434) IST1 homolog isoform a ( 366) 2393 275.0 1.9e-73
NP_001257905 (OMIM: 616434) IST1 homolog isoform c ( 379) 2393 275.0 1.9e-73
NP_055576 (OMIM: 616434) IST1 homolog isoform b [H ( 360) 1863 217.0 5.4e-56
NP_001257906 (OMIM: 616434) IST1 homolog isoform d ( 335) 1654 194.1   4e-49
NP_001257908 (OMIM: 616434) IST1 homolog isoform e ( 218) 1468 173.5   4e-43
NP_001257907 (OMIM: 616434) IST1 homolog isoform e ( 218) 1468 173.5   4e-43


>>NP_001257904 (OMIM: 616434) IST1 homolog isoform a [Ho  (366 aa)
 initn: 1586 init1: 1550 opt: 2393  Z-score: 1439.6  bits: 275.0 E(85289): 1.9e-73
Smith-Waterman score: 2393; 99.5% identity (99.5% similar) in 366 aa overlap (1-364:1-366)

               10        20        30        40        50        60
pF1KSD MLGSGFKAERLRVNLRLVINRLKLLEKKKTELAQKARKEIADYLAAGKDERARIRVEHII
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 MLGSGFKAERLRVNLRLVINRLKLLEKKKTELAQKARKEIADYLAAGKDERARIRVEHII
               10        20        30        40        50        60

               70        80        90       100       110       120
pF1KSD REDYLVEAMEILELYCDLLLARFGLIQSMKELDSGLAESVSTLIWAAPRLQSEVAELKIV
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 REDYLVEAMEILELYCDLLLARFGLIQSMKELDSGLAESVSTLIWAAPRLQSEVAELKIV
               70        80        90       100       110       120

              130       140       150       160       170       180
pF1KSD ADQLCAKYSKEYGKLCRTNQIGTVNDRLMHKLSVEAPPKILVERYLIEIAKNYNVPYEPD
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 ADQLCAKYSKEYGKLCRTNQIGTVNDRLMHKLSVEAPPKILVERYLIEIAKNYNVPYEPD
              130       140       150       160       170       180

              190       200       210       220       230          
pF1KSD SVVMAEAPPGVETDLIDVGFTDDVKKGGPGRGGSGGFTAPVGGPDGTVPMPMPMPMP--S
       :::::::::::::::::::::::::::::::::::::::::::::::::::::::::  :
NP_001 SVVMAEAPPGVETDLIDVGFTDDVKKGGPGRGGSGGFTAPVGGPDGTVPMPMPMPMPMPS
              190       200       210       220       230       240

      240       250       260       270       280       290        
pF1KSD ANTPFSYPLPKGPSDFNGLPMGTYQAFPNIHPPQIPATPPSYESVDDINADKNISSAQIV
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 ANTPFSYPLPKGPSDFNGLPMGTYQAFPNIHPPQIPATPPSYESVDDINADKNISSAQIV
              250       260       270       280       290       300

      300       310       320       330       340       350        
pF1KSD GPGPKPEASAKLPSRPADNYDNFVLPELPSVPDTLPTASAGASTSASEDIDFDDLSRRFE
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 GPGPKPEASAKLPSRPADNYDNFVLPELPSVPDTLPTASAGASTSASEDIDFDDLSRRFE
              310       320       330       340       350       360

      360    
pF1KSD ELKKKT
       ::::::
NP_001 ELKKKT
             

>>NP_001257905 (OMIM: 616434) IST1 homolog isoform c [Ho  (379 aa)
 initn: 1586 init1: 1550 opt: 2393  Z-score: 1439.4  bits: 275.0 E(85289): 1.9e-73
Smith-Waterman score: 2393; 99.5% identity (99.5% similar) in 366 aa overlap (1-364:14-379)

                            10        20        30        40       
pF1KSD              MLGSGFKAERLRVNLRLVINRLKLLEKKKTELAQKARKEIADYLAAG
                    :::::::::::::::::::::::::::::::::::::::::::::::
NP_001 MVFKLKTKEEQHSMLGSGFKAERLRVNLRLVINRLKLLEKKKTELAQKARKEIADYLAAG
               10        20        30        40        50        60

        50        60        70        80        90       100       
pF1KSD KDERARIRVEHIIREDYLVEAMEILELYCDLLLARFGLIQSMKELDSGLAESVSTLIWAA
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 KDERARIRVEHIIREDYLVEAMEILELYCDLLLARFGLIQSMKELDSGLAESVSTLIWAA
               70        80        90       100       110       120

       110       120       130       140       150       160       
pF1KSD PRLQSEVAELKIVADQLCAKYSKEYGKLCRTNQIGTVNDRLMHKLSVEAPPKILVERYLI
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 PRLQSEVAELKIVADQLCAKYSKEYGKLCRTNQIGTVNDRLMHKLSVEAPPKILVERYLI
              130       140       150       160       170       180

       170       180       190       200       210       220       
pF1KSD EIAKNYNVPYEPDSVVMAEAPPGVETDLIDVGFTDDVKKGGPGRGGSGGFTAPVGGPDGT
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 EIAKNYNVPYEPDSVVMAEAPPGVETDLIDVGFTDDVKKGGPGRGGSGGFTAPVGGPDGT
              190       200       210       220       230       240

       230         240       250       260       270       280     
pF1KSD VPMPMPMPMP--SANTPFSYPLPKGPSDFNGLPMGTYQAFPNIHPPQIPATPPSYESVDD
       ::::::::::  ::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 VPMPMPMPMPMPSANTPFSYPLPKGPSDFNGLPMGTYQAFPNIHPPQIPATPPSYESVDD
              250       260       270       280       290       300

         290       300       310       320       330       340     
pF1KSD INADKNISSAQIVGPGPKPEASAKLPSRPADNYDNFVLPELPSVPDTLPTASAGASTSAS
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 INADKNISSAQIVGPGPKPEASAKLPSRPADNYDNFVLPELPSVPDTLPTASAGASTSAS
              310       320       330       340       350       360

         350       360    
pF1KSD EDIDFDDLSRRFEELKKKT
       :::::::::::::::::::
NP_001 EDIDFDDLSRRFEELKKKT
              370         

>>NP_055576 (OMIM: 616434) IST1 homolog isoform b [Homo   (360 aa)
 initn: 1572 init1: 1550 opt: 1863  Z-score: 1126.2  bits: 217.0 E(85289): 5.4e-56
Smith-Waterman score: 1863; 92.6% identity (94.5% similar) in 310 aa overlap (1-307:1-310)

               10        20        30        40        50        60
pF1KSD MLGSGFKAERLRVNLRLVINRLKLLEKKKTELAQKARKEIADYLAAGKDERARIRVEHII
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_055 MLGSGFKAERLRVNLRLVINRLKLLEKKKTELAQKARKEIADYLAAGKDERARIRVEHII
               10        20        30        40        50        60

               70        80        90       100       110       120
pF1KSD REDYLVEAMEILELYCDLLLARFGLIQSMKELDSGLAESVSTLIWAAPRLQSEVAELKIV
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_055 REDYLVEAMEILELYCDLLLARFGLIQSMKELDSGLAESVSTLIWAAPRLQSEVAELKIV
               70        80        90       100       110       120

              130       140       150       160       170       180
pF1KSD ADQLCAKYSKEYGKLCRTNQIGTVNDRLMHKLSVEAPPKILVERYLIEIAKNYNVPYEPD
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_055 ADQLCAKYSKEYGKLCRTNQIGTVNDRLMHKLSVEAPPKILVERYLIEIAKNYNVPYEPD
              130       140       150       160       170       180

              190       200       210       220       230          
pF1KSD SVVMAEAPPGVETDLIDVGFTDDVKKGGPGRGGSGGFTAPVGGPDGTVPMPMPMPMP--S
       :::::::::::::::::::::::::::::::::::::::::::::::::::::::::  :
NP_055 SVVMAEAPPGVETDLIDVGFTDDVKKGGPGRGGSGGFTAPVGGPDGTVPMPMPMPMPMPS
              190       200       210       220       230       240

      240       250       260       270       280       290        
pF1KSD ANTPFSYPLPKGPSDFNGLPMGTYQAFPNIHPPQIPATPPSYESVDDINADKNISSAQIV
       ::::::::::::::::::::::::::::::::::::::::::::.  .    ..    .:
NP_055 ANTPFSYPLPKGPSDFNGLPMGTYQAFPNIHPPQIPATPPSYESMTLMLIRISLLHRLLV
              250       260       270       280       290       300

       300       310       320       330       340       350       
pF1KSD -GPGPKPEASAKLPSRPADNYDNFVLPELPSVPDTLPTASAGASTSASEDIDFDDLSRRF
         :. ::  :                                                  
NP_055 LDPSQKPLQSFLPDLQITMTTLSYQSCHLCQTHYQLHLLVPAPQHLKTLTLMIFPGGLKS
              310       320       330       340       350       360

>>NP_001257906 (OMIM: 616434) IST1 homolog isoform d [Ho  (335 aa)
 initn: 1753 init1: 1545 opt: 1654  Z-score: 1003.0  bits: 194.1 E(85289): 4e-49
Smith-Waterman score: 2094; 91.0% identity (91.0% similar) in 366 aa overlap (1-364:1-335)

               10        20        30        40        50        60
pF1KSD MLGSGFKAERLRVNLRLVINRLKLLEKKKTELAQKARKEIADYLAAGKDERARIRVEHII
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 MLGSGFKAERLRVNLRLVINRLKLLEKKKTELAQKARKEIADYLAAGKDERARIRVEHII
               10        20        30        40        50        60

               70        80        90       100       110       120
pF1KSD REDYLVEAMEILELYCDLLLARFGLIQSMKELDSGLAESVSTLIWAAPRLQSEVAELKIV
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 REDYLVEAMEILELYCDLLLARFGLIQSMKELDSGLAESVSTLIWAAPRLQSEVAELKIV
               70        80        90       100       110       120

              130       140       150       160       170       180
pF1KSD ADQLCAKYSKEYGKLCRTNQIGTVNDRLMHKLSVEAPPKILVERYLIEIAKNYNVPYEPD
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 ADQLCAKYSKEYGKLCRTNQIGTVNDRLMHKLSVEAPPKILVERYLIEIAKNYNVPYEPD
              130       140       150       160       170       180

              190       200       210       220       230          
pF1KSD SVVMAEAPPGVETDLIDVGFTDDVKKGGPGRGGSGGFTAPVGGPDGTVPMPMPMPMP--S
       :::::::::::::::::::::::::::::::::::::::::::::::::::::::::  :
NP_001 SVVMAEAPPGVETDLIDVGFTDDVKKGGPGRGGSGGFTAPVGGPDGTVPMPMPMPMPMPS
              190       200       210       220       230       240

      240       250       260       270       280       290        
pF1KSD ANTPFSYPLPKGPSDFNGLPMGTYQAFPNIHPPQIPATPPSYESVDDINADKNISSAQIV
       :::::::::::::                               ::::::::::::::::
NP_001 ANTPFSYPLPKGP-------------------------------VDDINADKNISSAQIV
              250                                      260         

      300       310       320       330       340       350        
pF1KSD GPGPKPEASAKLPSRPADNYDNFVLPELPSVPDTLPTASAGASTSASEDIDFDDLSRRFE
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 GPGPKPEASAKLPSRPADNYDNFVLPELPSVPDTLPTASAGASTSASEDIDFDDLSRRFE
     270       280       290       300       310       320         

      360    
pF1KSD ELKKKT
       ::::::
NP_001 ELKKKT
     330     

>>NP_001257908 (OMIM: 616434) IST1 homolog isoform e [Ho  (218 aa)
 initn: 941 init1: 941 opt: 1468  Z-score: 895.3  bits: 173.5 E(85289): 4e-43
Smith-Waterman score: 1468; 99.1% identity (99.1% similar) in 218 aa overlap (149-364:1-218)

      120       130       140       150       160       170        
pF1KSD IVADQLCAKYSKEYGKLCRTNQIGTVNDRLMHKLSVEAPPKILVERYLIEIAKNYNVPYE
                                     ::::::::::::::::::::::::::::::
NP_001                               MHKLSVEAPPKILVERYLIEIAKNYNVPYE
                                             10        20        30

      180       190       200       210       220       230        
pF1KSD PDSVVMAEAPPGVETDLIDVGFTDDVKKGGPGRGGSGGFTAPVGGPDGTVPMPMPMPMP-
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: 
NP_001 PDSVVMAEAPPGVETDLIDVGFTDDVKKGGPGRGGSGGFTAPVGGPDGTVPMPMPMPMPM
               40        50        60        70        80        90

        240       250       260       270       280       290      
pF1KSD -SANTPFSYPLPKGPSDFNGLPMGTYQAFPNIHPPQIPATPPSYESVDDINADKNISSAQ
        :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 PSANTPFSYPLPKGPSDFNGLPMGTYQAFPNIHPPQIPATPPSYESVDDINADKNISSAQ
              100       110       120       130       140       150

        300       310       320       330       340       350      
pF1KSD IVGPGPKPEASAKLPSRPADNYDNFVLPELPSVPDTLPTASAGASTSASEDIDFDDLSRR
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 IVGPGPKPEASAKLPSRPADNYDNFVLPELPSVPDTLPTASAGASTSASEDIDFDDLSRR
              160       170       180       190       200       210

        360    
pF1KSD FEELKKKT
       ::::::::
NP_001 FEELKKKT
               

>>NP_001257907 (OMIM: 616434) IST1 homolog isoform e [Ho  (218 aa)
 initn: 941 init1: 941 opt: 1468  Z-score: 895.3  bits: 173.5 E(85289): 4e-43
Smith-Waterman score: 1468; 99.1% identity (99.1% similar) in 218 aa overlap (149-364:1-218)

      120       130       140       150       160       170        
pF1KSD IVADQLCAKYSKEYGKLCRTNQIGTVNDRLMHKLSVEAPPKILVERYLIEIAKNYNVPYE
                                     ::::::::::::::::::::::::::::::
NP_001                               MHKLSVEAPPKILVERYLIEIAKNYNVPYE
                                             10        20        30

      180       190       200       210       220       230        
pF1KSD PDSVVMAEAPPGVETDLIDVGFTDDVKKGGPGRGGSGGFTAPVGGPDGTVPMPMPMPMP-
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: 
NP_001 PDSVVMAEAPPGVETDLIDVGFTDDVKKGGPGRGGSGGFTAPVGGPDGTVPMPMPMPMPM
               40        50        60        70        80        90

        240       250       260       270       280       290      
pF1KSD -SANTPFSYPLPKGPSDFNGLPMGTYQAFPNIHPPQIPATPPSYESVDDINADKNISSAQ
        :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 PSANTPFSYPLPKGPSDFNGLPMGTYQAFPNIHPPQIPATPPSYESVDDINADKNISSAQ
              100       110       120       130       140       150

        300       310       320       330       340       350      
pF1KSD IVGPGPKPEASAKLPSRPADNYDNFVLPELPSVPDTLPTASAGASTSASEDIDFDDLSRR
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 IVGPGPKPEASAKLPSRPADNYDNFVLPELPSVPDTLPTASAGASTSASEDIDFDDLSRR
              160       170       180       190       200       210

        360    
pF1KSD FEELKKKT
       ::::::::
NP_001 FEELKKKT
               




364 residues in 1 query   sequences
60827320 residues in 85289 library sequences
 Tcomplib [36.3.4 Apr, 2011] (8 proc)
 start: Thu Nov  3 00:28:50 2016 done: Thu Nov  3 00:28:51 2016
 Total Scan time:  8.240 Total Display time: -0.020

Function used was FASTA [36.3.4 Apr, 2011]
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