Result of FASTA (ccds) for pF1KSDA0174
FASTA searches a protein or DNA sequence data bank 36.3.4 Apr, 2011
Please cite:
W.R. Pearson & D.J. Lipman PNAS (1988) 85:2444-2448

Query: pF1KSDA0174, 364 aa
  1>>>pF1KSDA0174 364 - 364 aa - 364 aa
Library: human.CCDS.faa
  18511270 residues in 32554 sequences

Statistics:  Expectation_n fit: rho(ln(x))= 9.1782+/-0.000992; mu= 0.5002+/- 0.060
 mean_var=258.0967+/-52.282, 0's: 0 Z-trim(113.5): 13  B-trim: 0 in 0/53
 Lambda= 0.079833
 statistics sampled from 14168 (14175) to 14168 sequences
Algorithm: FASTA (3.7 Nov 2010) [optimized]
Parameters: BL50 matrix (15:-5), open/ext: -10/-2
 ktup: 2, E-join: 1 (0.762), E-opt: 0.2 (0.435), width:  16
 Scan time:  2.520

The best scores are:                                      opt bits E(32554)
CCDS59272.1 IST1 gene_id:9798|Hs108|chr16          ( 366) 2393 288.4 6.7e-78
CCDS59271.1 IST1 gene_id:9798|Hs108|chr16          ( 379) 2393 288.4 6.9e-78
CCDS10905.1 IST1 gene_id:9798|Hs108|chr16          ( 360) 1863 227.3 1.6e-59
CCDS59273.1 IST1 gene_id:9798|Hs108|chr16          ( 335) 1654 203.2 2.6e-52
CCDS59274.1 IST1 gene_id:9798|Hs108|chr16          ( 218) 1468 181.6 5.4e-46


>>CCDS59272.1 IST1 gene_id:9798|Hs108|chr16               (366 aa)
 initn: 1586 init1: 1550 opt: 2393  Z-score: 1512.0  bits: 288.4 E(32554): 6.7e-78
Smith-Waterman score: 2393; 99.5% identity (99.5% similar) in 366 aa overlap (1-364:1-366)

               10        20        30        40        50        60
pF1KSD MLGSGFKAERLRVNLRLVINRLKLLEKKKTELAQKARKEIADYLAAGKDERARIRVEHII
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS59 MLGSGFKAERLRVNLRLVINRLKLLEKKKTELAQKARKEIADYLAAGKDERARIRVEHII
               10        20        30        40        50        60

               70        80        90       100       110       120
pF1KSD REDYLVEAMEILELYCDLLLARFGLIQSMKELDSGLAESVSTLIWAAPRLQSEVAELKIV
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS59 REDYLVEAMEILELYCDLLLARFGLIQSMKELDSGLAESVSTLIWAAPRLQSEVAELKIV
               70        80        90       100       110       120

              130       140       150       160       170       180
pF1KSD ADQLCAKYSKEYGKLCRTNQIGTVNDRLMHKLSVEAPPKILVERYLIEIAKNYNVPYEPD
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS59 ADQLCAKYSKEYGKLCRTNQIGTVNDRLMHKLSVEAPPKILVERYLIEIAKNYNVPYEPD
              130       140       150       160       170       180

              190       200       210       220       230          
pF1KSD SVVMAEAPPGVETDLIDVGFTDDVKKGGPGRGGSGGFTAPVGGPDGTVPMPMPMPMP--S
       :::::::::::::::::::::::::::::::::::::::::::::::::::::::::  :
CCDS59 SVVMAEAPPGVETDLIDVGFTDDVKKGGPGRGGSGGFTAPVGGPDGTVPMPMPMPMPMPS
              190       200       210       220       230       240

      240       250       260       270       280       290        
pF1KSD ANTPFSYPLPKGPSDFNGLPMGTYQAFPNIHPPQIPATPPSYESVDDINADKNISSAQIV
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS59 ANTPFSYPLPKGPSDFNGLPMGTYQAFPNIHPPQIPATPPSYESVDDINADKNISSAQIV
              250       260       270       280       290       300

      300       310       320       330       340       350        
pF1KSD GPGPKPEASAKLPSRPADNYDNFVLPELPSVPDTLPTASAGASTSASEDIDFDDLSRRFE
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS59 GPGPKPEASAKLPSRPADNYDNFVLPELPSVPDTLPTASAGASTSASEDIDFDDLSRRFE
              310       320       330       340       350       360

      360    
pF1KSD ELKKKT
       ::::::
CCDS59 ELKKKT
             

>>CCDS59271.1 IST1 gene_id:9798|Hs108|chr16               (379 aa)
 initn: 1586 init1: 1550 opt: 2393  Z-score: 1511.8  bits: 288.4 E(32554): 6.9e-78
Smith-Waterman score: 2393; 99.5% identity (99.5% similar) in 366 aa overlap (1-364:14-379)

                            10        20        30        40       
pF1KSD              MLGSGFKAERLRVNLRLVINRLKLLEKKKTELAQKARKEIADYLAAG
                    :::::::::::::::::::::::::::::::::::::::::::::::
CCDS59 MVFKLKTKEEQHSMLGSGFKAERLRVNLRLVINRLKLLEKKKTELAQKARKEIADYLAAG
               10        20        30        40        50        60

        50        60        70        80        90       100       
pF1KSD KDERARIRVEHIIREDYLVEAMEILELYCDLLLARFGLIQSMKELDSGLAESVSTLIWAA
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS59 KDERARIRVEHIIREDYLVEAMEILELYCDLLLARFGLIQSMKELDSGLAESVSTLIWAA
               70        80        90       100       110       120

       110       120       130       140       150       160       
pF1KSD PRLQSEVAELKIVADQLCAKYSKEYGKLCRTNQIGTVNDRLMHKLSVEAPPKILVERYLI
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS59 PRLQSEVAELKIVADQLCAKYSKEYGKLCRTNQIGTVNDRLMHKLSVEAPPKILVERYLI
              130       140       150       160       170       180

       170       180       190       200       210       220       
pF1KSD EIAKNYNVPYEPDSVVMAEAPPGVETDLIDVGFTDDVKKGGPGRGGSGGFTAPVGGPDGT
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS59 EIAKNYNVPYEPDSVVMAEAPPGVETDLIDVGFTDDVKKGGPGRGGSGGFTAPVGGPDGT
              190       200       210       220       230       240

       230         240       250       260       270       280     
pF1KSD VPMPMPMPMP--SANTPFSYPLPKGPSDFNGLPMGTYQAFPNIHPPQIPATPPSYESVDD
       ::::::::::  ::::::::::::::::::::::::::::::::::::::::::::::::
CCDS59 VPMPMPMPMPMPSANTPFSYPLPKGPSDFNGLPMGTYQAFPNIHPPQIPATPPSYESVDD
              250       260       270       280       290       300

         290       300       310       320       330       340     
pF1KSD INADKNISSAQIVGPGPKPEASAKLPSRPADNYDNFVLPELPSVPDTLPTASAGASTSAS
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS59 INADKNISSAQIVGPGPKPEASAKLPSRPADNYDNFVLPELPSVPDTLPTASAGASTSAS
              310       320       330       340       350       360

         350       360    
pF1KSD EDIDFDDLSRRFEELKKKT
       :::::::::::::::::::
CCDS59 EDIDFDDLSRRFEELKKKT
              370         

>>CCDS10905.1 IST1 gene_id:9798|Hs108|chr16               (360 aa)
 initn: 1572 init1: 1550 opt: 1863  Z-score: 1182.2  bits: 227.3 E(32554): 1.6e-59
Smith-Waterman score: 1863; 92.6% identity (94.5% similar) in 310 aa overlap (1-307:1-310)

               10        20        30        40        50        60
pF1KSD MLGSGFKAERLRVNLRLVINRLKLLEKKKTELAQKARKEIADYLAAGKDERARIRVEHII
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS10 MLGSGFKAERLRVNLRLVINRLKLLEKKKTELAQKARKEIADYLAAGKDERARIRVEHII
               10        20        30        40        50        60

               70        80        90       100       110       120
pF1KSD REDYLVEAMEILELYCDLLLARFGLIQSMKELDSGLAESVSTLIWAAPRLQSEVAELKIV
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS10 REDYLVEAMEILELYCDLLLARFGLIQSMKELDSGLAESVSTLIWAAPRLQSEVAELKIV
               70        80        90       100       110       120

              130       140       150       160       170       180
pF1KSD ADQLCAKYSKEYGKLCRTNQIGTVNDRLMHKLSVEAPPKILVERYLIEIAKNYNVPYEPD
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS10 ADQLCAKYSKEYGKLCRTNQIGTVNDRLMHKLSVEAPPKILVERYLIEIAKNYNVPYEPD
              130       140       150       160       170       180

              190       200       210       220       230          
pF1KSD SVVMAEAPPGVETDLIDVGFTDDVKKGGPGRGGSGGFTAPVGGPDGTVPMPMPMPMP--S
       :::::::::::::::::::::::::::::::::::::::::::::::::::::::::  :
CCDS10 SVVMAEAPPGVETDLIDVGFTDDVKKGGPGRGGSGGFTAPVGGPDGTVPMPMPMPMPMPS
              190       200       210       220       230       240

      240       250       260       270       280       290        
pF1KSD ANTPFSYPLPKGPSDFNGLPMGTYQAFPNIHPPQIPATPPSYESVDDINADKNISSAQIV
       ::::::::::::::::::::::::::::::::::::::::::::.  .    ..    .:
CCDS10 ANTPFSYPLPKGPSDFNGLPMGTYQAFPNIHPPQIPATPPSYESMTLMLIRISLLHRLLV
              250       260       270       280       290       300

       300       310       320       330       340       350       
pF1KSD -GPGPKPEASAKLPSRPADNYDNFVLPELPSVPDTLPTASAGASTSASEDIDFDDLSRRF
         :. ::  :                                                  
CCDS10 LDPSQKPLQSFLPDLQITMTTLSYQSCHLCQTHYQLHLLVPAPQHLKTLTLMIFPGGLKS
              310       320       330       340       350       360

>>CCDS59273.1 IST1 gene_id:9798|Hs108|chr16               (335 aa)
 initn: 1753 init1: 1545 opt: 1654  Z-score: 1052.5  bits: 203.2 E(32554): 2.6e-52
Smith-Waterman score: 2094; 91.0% identity (91.0% similar) in 366 aa overlap (1-364:1-335)

               10        20        30        40        50        60
pF1KSD MLGSGFKAERLRVNLRLVINRLKLLEKKKTELAQKARKEIADYLAAGKDERARIRVEHII
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS59 MLGSGFKAERLRVNLRLVINRLKLLEKKKTELAQKARKEIADYLAAGKDERARIRVEHII
               10        20        30        40        50        60

               70        80        90       100       110       120
pF1KSD REDYLVEAMEILELYCDLLLARFGLIQSMKELDSGLAESVSTLIWAAPRLQSEVAELKIV
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS59 REDYLVEAMEILELYCDLLLARFGLIQSMKELDSGLAESVSTLIWAAPRLQSEVAELKIV
               70        80        90       100       110       120

              130       140       150       160       170       180
pF1KSD ADQLCAKYSKEYGKLCRTNQIGTVNDRLMHKLSVEAPPKILVERYLIEIAKNYNVPYEPD
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS59 ADQLCAKYSKEYGKLCRTNQIGTVNDRLMHKLSVEAPPKILVERYLIEIAKNYNVPYEPD
              130       140       150       160       170       180

              190       200       210       220       230          
pF1KSD SVVMAEAPPGVETDLIDVGFTDDVKKGGPGRGGSGGFTAPVGGPDGTVPMPMPMPMP--S
       :::::::::::::::::::::::::::::::::::::::::::::::::::::::::  :
CCDS59 SVVMAEAPPGVETDLIDVGFTDDVKKGGPGRGGSGGFTAPVGGPDGTVPMPMPMPMPMPS
              190       200       210       220       230       240

      240       250       260       270       280       290        
pF1KSD ANTPFSYPLPKGPSDFNGLPMGTYQAFPNIHPPQIPATPPSYESVDDINADKNISSAQIV
       :::::::::::::                               ::::::::::::::::
CCDS59 ANTPFSYPLPKGP-------------------------------VDDINADKNISSAQIV
              250                                      260         

      300       310       320       330       340       350        
pF1KSD GPGPKPEASAKLPSRPADNYDNFVLPELPSVPDTLPTASAGASTSASEDIDFDDLSRRFE
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS59 GPGPKPEASAKLPSRPADNYDNFVLPELPSVPDTLPTASAGASTSASEDIDFDDLSRRFE
     270       280       290       300       310       320         

      360    
pF1KSD ELKKKT
       ::::::
CCDS59 ELKKKT
     330     

>>CCDS59274.1 IST1 gene_id:9798|Hs108|chr16               (218 aa)
 initn: 941 init1: 941 opt: 1468  Z-score: 939.2  bits: 181.6 E(32554): 5.4e-46
Smith-Waterman score: 1468; 99.1% identity (99.1% similar) in 218 aa overlap (149-364:1-218)

      120       130       140       150       160       170        
pF1KSD IVADQLCAKYSKEYGKLCRTNQIGTVNDRLMHKLSVEAPPKILVERYLIEIAKNYNVPYE
                                     ::::::::::::::::::::::::::::::
CCDS59                               MHKLSVEAPPKILVERYLIEIAKNYNVPYE
                                             10        20        30

      180       190       200       210       220       230        
pF1KSD PDSVVMAEAPPGVETDLIDVGFTDDVKKGGPGRGGSGGFTAPVGGPDGTVPMPMPMPMP-
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: 
CCDS59 PDSVVMAEAPPGVETDLIDVGFTDDVKKGGPGRGGSGGFTAPVGGPDGTVPMPMPMPMPM
               40        50        60        70        80        90

        240       250       260       270       280       290      
pF1KSD -SANTPFSYPLPKGPSDFNGLPMGTYQAFPNIHPPQIPATPPSYESVDDINADKNISSAQ
        :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS59 PSANTPFSYPLPKGPSDFNGLPMGTYQAFPNIHPPQIPATPPSYESVDDINADKNISSAQ
              100       110       120       130       140       150

        300       310       320       330       340       350      
pF1KSD IVGPGPKPEASAKLPSRPADNYDNFVLPELPSVPDTLPTASAGASTSASEDIDFDDLSRR
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS59 IVGPGPKPEASAKLPSRPADNYDNFVLPELPSVPDTLPTASAGASTSASEDIDFDDLSRR
              160       170       180       190       200       210

        360    
pF1KSD FEELKKKT
       ::::::::
CCDS59 FEELKKKT
               




364 residues in 1 query   sequences
18511270 residues in 32554 library sequences
 Tcomplib [36.3.4 Apr, 2011] (8 proc)
 start: Thu Nov  3 00:28:50 2016 done: Thu Nov  3 00:28:50 2016
 Total Scan time:  2.520 Total Display time:  0.000

Function used was FASTA [36.3.4 Apr, 2011]
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